From c84237c2b2d579b4e4e285744eeda0667f9e44cd Mon Sep 17 00:00:00 2001
From: Tom Clegg <tom@clinicalfuture.com>
Date: Wed, 17 Jul 2013 14:26:21 -0400
Subject: [PATCH] count files instead of specimens on dashboard

---
 apps/workbench/app/views/users/home.html.erb | 10 +++++-----
 sdk/cli/bin/arv-run-pipeline-instance        |  4 ++--
 2 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/apps/workbench/app/views/users/home.html.erb b/apps/workbench/app/views/users/home.html.erb
index 7ae47eb28e..fddd76c610 100644
--- a/apps/workbench/app/views/users/home.html.erb
+++ b/apps/workbench/app/views/users/home.html.erb
@@ -28,19 +28,19 @@
     <div class="clearfix">
       <h4>Account summary</h4>
       <div class="well clearfix">
-        <% [Human, Specimen, Trait, Collection, PipelineTemplate, PipelineInstance].each do |aclass| %>
+        <% [Human, Trait, Collection, 'File', PipelineTemplate, PipelineInstance].each do |aclass| %>
         <div class="col span2 centerme">
           <span class="bigfatnumber">
-            <% if [Human, Specimen, Trait, Collection].index aclass  %>
-            <%= aclass.limit(4000).where({}).count %>
+            <% if aclass == 'File' %>
+            <%= Collection.limit(4000).where({}).collect(&:files).flatten(1).count %>
             <% else %>
-            <%= aclass.limit(1000).where({owner_uuid:current_user.uuid}).count %>
+            <%= aclass.limit(4000).where({}).count %>
             <% end %>
           </span>
           <br />
           <%= raw(aclass.to_s.pluralize.underscore.gsub '_', '&nbsp;') %>
         </div>
-<% end %>
+        <% end %>
       </div>
     </div>
   </div>
diff --git a/sdk/cli/bin/arv-run-pipeline-instance b/sdk/cli/bin/arv-run-pipeline-instance
index 0842225cb8..251d378da2 100755
--- a/sdk/cli/bin/arv-run-pipeline-instance
+++ b/sdk/cli/bin/arv-run-pipeline-instance
@@ -280,7 +280,7 @@ class JobCache
     if j.is_a? Hash and j[:uuid]
       @cache[j[:uuid]] = j
     else
-      debuglog "create job: #{j[:errors] rescue nil}"
+      debuglog "create job: #{j[:errors] rescue nil}", 0
       nil
     end
   end
@@ -429,7 +429,7 @@ class WhRunPipelineInstance
                 debuglog "component #{cname} new job #{job[:uuid]}"
                 c[:job] = job
               else
-                debuglog "component #{cname} new job failed: #{job[:errors]}"
+                debuglog "component #{cname} new job failed"
               end
             end
           end
-- 
2.30.2