From c4e7c6d5a1a9604c1c1e53a5aa749eb1e45f92a1 Mon Sep 17 00:00:00 2001 From: Tom Clegg Date: Wed, 31 Dec 2014 16:33:57 -0500 Subject: [PATCH] Remove cruft. No issue # --- .../virtual_machines_controller.rb | 3 - .../api_client_authorizations_helper.rb | 2 - .../app/helpers/authorized_keys_helper.rb | 2 - apps/workbench/app/helpers/groups_helper.rb | 2 - apps/workbench/app/helpers/humans_helper.rb | 2 - .../workbench/app/helpers/job_tasks_helper.rb | 2 - .../app/helpers/keep_disks_helper.rb | 2 - apps/workbench/app/helpers/links_helper.rb | 2 - apps/workbench/app/helpers/logs_helper.rb | 2 - apps/workbench/app/helpers/nodes_helper.rb | 2 - apps/workbench/app/helpers/projects_helper.rb | 2 - .../app/helpers/repositories_helper.rb | 2 - apps/workbench/app/helpers/sessions_helper.rb | 2 - .../workbench/app/helpers/specimens_helper.rb | 2 - apps/workbench/app/helpers/traits_helper.rb | 2 - .../app/helpers/user_agreements_helper.rb | 2 - apps/workbench/app/helpers/users_helper.rb | 2 - .../app/helpers/vcf_pipeline_helper.rb | 234 ------------------ .../app/helpers/virtual_machines_helper.rb | 2 - .../views/authorized_keys/_show_help.html.erb | 10 - .../unit/api_client_authorization_test.rb | 7 - .../test/unit/authorized_key_test.rb | 7 - apps/workbench/test/unit/human_test.rb | 7 - apps/workbench/test/unit/job_task_test.rb | 7 - apps/workbench/test/unit/keep_disk_test.rb | 4 - apps/workbench/test/unit/log_test.rb | 7 - apps/workbench/test/unit/node_test.rb | 7 - .../test/unit/pipeline_template_test.rb | 7 - apps/workbench/test/unit/repository_test.rb | 7 - apps/workbench/test/unit/specimen_test.rb | 7 - apps/workbench/test/unit/trait_test.rb | 7 - .../test/unit/user_agreement_test.rb | 7 - .../test/unit/virtual_machine_test.rb | 7 - 33 files changed, 369 deletions(-) delete mode 100644 apps/workbench/app/helpers/api_client_authorizations_helper.rb delete mode 100644 apps/workbench/app/helpers/authorized_keys_helper.rb delete mode 100644 apps/workbench/app/helpers/groups_helper.rb delete mode 100644 apps/workbench/app/helpers/humans_helper.rb delete mode 100644 apps/workbench/app/helpers/job_tasks_helper.rb delete mode 100644 apps/workbench/app/helpers/keep_disks_helper.rb delete mode 100644 apps/workbench/app/helpers/links_helper.rb delete mode 100644 apps/workbench/app/helpers/logs_helper.rb delete mode 100644 apps/workbench/app/helpers/nodes_helper.rb delete mode 100644 apps/workbench/app/helpers/projects_helper.rb delete mode 100644 apps/workbench/app/helpers/repositories_helper.rb delete mode 100644 apps/workbench/app/helpers/sessions_helper.rb delete mode 100644 apps/workbench/app/helpers/specimens_helper.rb delete mode 100644 apps/workbench/app/helpers/traits_helper.rb delete mode 100644 apps/workbench/app/helpers/user_agreements_helper.rb delete mode 100644 apps/workbench/app/helpers/users_helper.rb delete mode 100644 apps/workbench/app/helpers/vcf_pipeline_helper.rb delete mode 100644 apps/workbench/app/helpers/virtual_machines_helper.rb delete mode 100644 apps/workbench/app/views/authorized_keys/_show_help.html.erb delete mode 100644 apps/workbench/test/unit/api_client_authorization_test.rb delete mode 100644 apps/workbench/test/unit/authorized_key_test.rb delete mode 100644 apps/workbench/test/unit/human_test.rb delete mode 100644 apps/workbench/test/unit/job_task_test.rb delete mode 100644 apps/workbench/test/unit/keep_disk_test.rb delete mode 100644 apps/workbench/test/unit/log_test.rb delete mode 100644 apps/workbench/test/unit/node_test.rb delete mode 100644 apps/workbench/test/unit/pipeline_template_test.rb delete mode 100644 apps/workbench/test/unit/repository_test.rb delete mode 100644 apps/workbench/test/unit/specimen_test.rb delete mode 100644 apps/workbench/test/unit/trait_test.rb delete mode 100644 apps/workbench/test/unit/user_agreement_test.rb delete mode 100644 apps/workbench/test/unit/virtual_machine_test.rb diff --git a/apps/workbench/app/controllers/virtual_machines_controller.rb b/apps/workbench/app/controllers/virtual_machines_controller.rb index c3512e2e4d..a62ba81b09 100644 --- a/apps/workbench/app/controllers/virtual_machines_controller.rb +++ b/apps/workbench/app/controllers/virtual_machines_controller.rb @@ -1,7 +1,4 @@ class VirtualMachinesController < ApplicationController - def index_pane_list - %w(recent help) - end def index @objects ||= model_class.all @vm_logins = {} diff --git a/apps/workbench/app/helpers/api_client_authorizations_helper.rb b/apps/workbench/app/helpers/api_client_authorizations_helper.rb deleted file mode 100644 index 98ddddc97d..0000000000 --- a/apps/workbench/app/helpers/api_client_authorizations_helper.rb +++ /dev/null @@ -1,2 +0,0 @@ -module ApiClientAuthorizationsHelper -end diff --git a/apps/workbench/app/helpers/authorized_keys_helper.rb b/apps/workbench/app/helpers/authorized_keys_helper.rb deleted file mode 100644 index 9a486f28ae..0000000000 --- a/apps/workbench/app/helpers/authorized_keys_helper.rb +++ /dev/null @@ -1,2 +0,0 @@ -module AuthorizedKeysHelper -end diff --git a/apps/workbench/app/helpers/groups_helper.rb b/apps/workbench/app/helpers/groups_helper.rb deleted file mode 100644 index c091b2fc82..0000000000 --- a/apps/workbench/app/helpers/groups_helper.rb +++ /dev/null @@ -1,2 +0,0 @@ -module GroupsHelper -end diff --git a/apps/workbench/app/helpers/humans_helper.rb b/apps/workbench/app/helpers/humans_helper.rb deleted file mode 100644 index ca84af0bff..0000000000 --- a/apps/workbench/app/helpers/humans_helper.rb +++ /dev/null @@ -1,2 +0,0 @@ -module HumansHelper -end diff --git a/apps/workbench/app/helpers/job_tasks_helper.rb b/apps/workbench/app/helpers/job_tasks_helper.rb deleted file mode 100644 index b08a1aef17..0000000000 --- a/apps/workbench/app/helpers/job_tasks_helper.rb +++ /dev/null @@ -1,2 +0,0 @@ -module JobTasksHelper -end diff --git a/apps/workbench/app/helpers/keep_disks_helper.rb b/apps/workbench/app/helpers/keep_disks_helper.rb deleted file mode 100644 index 9cf6b4a22d..0000000000 --- a/apps/workbench/app/helpers/keep_disks_helper.rb +++ /dev/null @@ -1,2 +0,0 @@ -module KeepDisksHelper -end diff --git a/apps/workbench/app/helpers/links_helper.rb b/apps/workbench/app/helpers/links_helper.rb deleted file mode 100644 index f6bc988132..0000000000 --- a/apps/workbench/app/helpers/links_helper.rb +++ /dev/null @@ -1,2 +0,0 @@ -module LinksHelper -end diff --git a/apps/workbench/app/helpers/logs_helper.rb b/apps/workbench/app/helpers/logs_helper.rb deleted file mode 100644 index 99736f0c6d..0000000000 --- a/apps/workbench/app/helpers/logs_helper.rb +++ /dev/null @@ -1,2 +0,0 @@ -module LogsHelper -end diff --git a/apps/workbench/app/helpers/nodes_helper.rb b/apps/workbench/app/helpers/nodes_helper.rb deleted file mode 100644 index 673b561143..0000000000 --- a/apps/workbench/app/helpers/nodes_helper.rb +++ /dev/null @@ -1,2 +0,0 @@ -module NodesHelper -end diff --git a/apps/workbench/app/helpers/projects_helper.rb b/apps/workbench/app/helpers/projects_helper.rb deleted file mode 100644 index db5c5ce1a7..0000000000 --- a/apps/workbench/app/helpers/projects_helper.rb +++ /dev/null @@ -1,2 +0,0 @@ -module ProjectsHelper -end diff --git a/apps/workbench/app/helpers/repositories_helper.rb b/apps/workbench/app/helpers/repositories_helper.rb deleted file mode 100644 index 2860b5a916..0000000000 --- a/apps/workbench/app/helpers/repositories_helper.rb +++ /dev/null @@ -1,2 +0,0 @@ -module RepositoriesHelper -end diff --git a/apps/workbench/app/helpers/sessions_helper.rb b/apps/workbench/app/helpers/sessions_helper.rb deleted file mode 100644 index 309f8b2eb3..0000000000 --- a/apps/workbench/app/helpers/sessions_helper.rb +++ /dev/null @@ -1,2 +0,0 @@ -module SessionsHelper -end diff --git a/apps/workbench/app/helpers/specimens_helper.rb b/apps/workbench/app/helpers/specimens_helper.rb deleted file mode 100644 index 8c30d973ab..0000000000 --- a/apps/workbench/app/helpers/specimens_helper.rb +++ /dev/null @@ -1,2 +0,0 @@ -module SpecimensHelper -end diff --git a/apps/workbench/app/helpers/traits_helper.rb b/apps/workbench/app/helpers/traits_helper.rb deleted file mode 100644 index a4260eb07a..0000000000 --- a/apps/workbench/app/helpers/traits_helper.rb +++ /dev/null @@ -1,2 +0,0 @@ -module TraitsHelper -end diff --git a/apps/workbench/app/helpers/user_agreements_helper.rb b/apps/workbench/app/helpers/user_agreements_helper.rb deleted file mode 100644 index ab8d3d37f8..0000000000 --- a/apps/workbench/app/helpers/user_agreements_helper.rb +++ /dev/null @@ -1,2 +0,0 @@ -module UserAgreementsHelper -end diff --git a/apps/workbench/app/helpers/users_helper.rb b/apps/workbench/app/helpers/users_helper.rb deleted file mode 100644 index 2310a240d7..0000000000 --- a/apps/workbench/app/helpers/users_helper.rb +++ /dev/null @@ -1,2 +0,0 @@ -module UsersHelper -end diff --git a/apps/workbench/app/helpers/vcf_pipeline_helper.rb b/apps/workbench/app/helpers/vcf_pipeline_helper.rb deleted file mode 100644 index 9a3d6e730b..0000000000 --- a/apps/workbench/app/helpers/vcf_pipeline_helper.rb +++ /dev/null @@ -1,234 +0,0 @@ -module VcfPipelineHelper - require 'csv' - - def reset_vcf_pipeline_instance(pi, input_manifest) - params = { - 'PICARD_ZIP' => '7a4073e29bfa87154b7102e75668c454+83+K@van', - 'GATK_BUNDLE' => '0a37aaf212464efa2a77ff9ba51c0148+10524+K@van', - 'GATK_TAR_BZ2' => '482ebab0408e173370c499f0b7c00878+93+K@van', - 'BWA' => '73be5598809c66f260fedd253c8608bd+67+K@van', - 'SAM' => '55d2115faa608eb95dab4f875b7511b1+72+K@van', - 'REGION_PADDING' => '10', - 'REGIONS' => 'e52c086f41c2f089d88ec2bbd45355d3+87+K@van/SeqCap_EZ_Exome_v2.hg19.bed', - 'STAND_CALL_CONF' => '4.0', - 'STAND_EMIT_CONF' => '4.0', - "bwa/INPUT" => input_manifest - } - pi.components = PipelineTemplate.find(pi.pipeline_uuid).components - pi.update_job_parameters(params) - pi.active = true - pi.success = nil - end - - def vcf_pipeline_summary(pi) - stats = {} - collection_link = Link. - where(head_uuid: pi.uuid, - link_class: 'client-defined', - name: 'vcffarm-pipeline-invocation'). - last - if collection_link - stats[:collection_uuid] = collection_link.tail_uuid - else - pi.components[:steps].each do |step| - if step[:name] == 'bwa' - step[:params].each do |param| - if param[:name] == 'INPUT' - stats[:collection_uuid] = param[:data_locator] || param[:value] - break - end - end - end - end - end - if stats[:collection_uuid] - Link.where(tail_uuid: stats[:collection_uuid], - head_kind: Group)[0..0].each do |c2p| - stats[:project_uuid] = c2p.head_uuid - group = Group.find stats[:project_uuid] - stats[:project_name] = group.name rescue nil - end - Link.where(tail_uuid: stats[:collection_uuid], - head_kind: Specimen)[0..0].each do |c2s| - stats[:specimen_uuid] = c2s.head_uuid - specimen = Specimen.find stats[:specimen_uuid] - stats[:specimen_id] = specimen.properties[:specimen_id] rescue nil - end - end - stats[:runtime] = {} - stats[:alignment_for_step] = {} - stats[:alignment] = {} - stats[:coverage] = [] - pi.components[:steps].each do |step| - if step[:warehousejob] - if step[:name] == 'bwa' and step[:warehousejob][:starttime] - stats[:runtime][:started_at] = step[:warehousejob][:starttime] - end - if step[:warehousejob][:finishtime] - stats[:runtime][:finished_at] = - [ step[:warehousejob][:finishtime], - stats[:runtime][:finished_at] ].compact.max - end - end - if step[:name] == 'picard-casm' and - step[:complete] and - step[:output_data_locator] - tsv = IO. - popen("whget -r #{step[:output_data_locator]}/ -"). - readlines. - collect { |x| x.strip.split "\t" } - casm = {} - head = [] - tsv.each do |data| - if data.size < 4 or data[0].match /^\#/ - next - elsif data[0] == 'CATEGORY' or data[1].match /[^\d\.]/ - head = data - elsif data[0] == 'PAIR' - head.each_with_index do |name, index| - x = data[index] - if x and x.match /^\d+$/ - x = x.to_i - elsif x and x.match /^\d+\.\d+$/ - x = x.to_f - end - name = name.downcase.to_sym - casm[name] ||= [] - casm[name] << x - end - end - end - stats[:picard_alignment_summary] = casm - end - if step[:name] == 'gatk-stats' and - step[:complete] and - step[:output_data_locator] - csv = IO. - popen("whget #{step[:output_data_locator]}/mincoverage_nlocus.csv"). - readlines. - collect { |x| x.strip.split ',' } - csv.each do |depth, nlocus, percent| - stats[:coverage][depth.to_i] = nlocus.to_i - end - end - if step[:name] == 'gatk-realign' and - step[:complete] and - step[:output_data_locator] - logs = IO. - popen("whget #{step[:warehousejob][:metakey]}"). - readlines. - collect(&:strip) - logs.each do |logline| - if (re = logline.match /\s(\d+) stderr INFO .* (\d+) reads were filtered out.*of (\d+) total/) - stats[:alignment_for_step][re[1]] ||= {} - stats[:alignment_for_step][re[1]][:filtered_reads] = re[2].to_i - stats[:alignment_for_step][re[1]][:total_reads] = re[3].to_i - elsif (re = logline.match /(\d+) reads.* failing BadMate/) - stats[:alignment][:bad_mate_reads] = re[1].to_i - elsif (re = logline.match /(\d+) reads.* failing MappingQualityZero/) - stats[:alignment][:mapq0_reads] = re[1].to_i - end - end - end - if step[:name] == 'gatk-merge-call' and - step[:complete] and - step[:output_data_locator] - stats[:vcf_file_name] = "#{stats[:project_name]}-#{stats[:specimen_id]}-#{step[:output_data_locator][0..31]}.vcf" - logs = IO. - popen("whget #{step[:warehousejob][:metakey]}"). - readlines. - collect(&:strip) - logs.each do |logline| - if (re = logline.match /(\d+) reads were filtered out.*of (\d+) total/) - stats[:alignment][:filtered_reads] = re[1].to_i - stats[:alignment][:total_realigned_reads] = re[2].to_i - elsif (re = logline.match /(\d+) reads.* failing BadMate/) - stats[:alignment][:bad_mate_reads] = re[1].to_i - elsif (re = logline.match /(\d+) reads.* failing UnmappedRead/) - stats[:alignment][:unmapped_reads] = re[1].to_i - end - end - - stats[:chromosome_calls] = {} - tsv = IO. - popen("whget #{step[:output_data_locator]}/merged.vcf | egrep -v '^#' | cut -f1 | uniq -c"). - readlines. - collect { |x| x.strip.split } - tsv.each do |n_variants, sequence_name| - stats[:chromosome_calls][sequence_name] = n_variants.to_i - end - - stats[:inferred_sex] = false - calls = stats[:chromosome_calls] - if calls['X'] and calls['X'] > 200 - if !calls['Y'] - stats[:inferred_sex] = 'female' - elsif calls['Y'] * 60 < calls['X'] - # if Y < X/60 they are presumed to be misalignments - stats[:inferred_sex] = 'female' - elsif calls['Y'] * 25 > calls['X'] - # if Y > X/25 we presume a Y chromosome was present - stats[:inferred_sex] = 'male' - end - end - end - end - stats[:alignment][:total_reads] = 0 - stats[:alignment][:filtered_reads] ||= 0 - stats[:alignment][:bad_mate_reads] ||= 0 - stats[:alignment][:mapq0_reads] ||= 0 - stats[:alignment_for_step].values.each do |a4s| - stats[:alignment][:total_reads] += (a4s[:total_reads] || 0) - stats[:alignment][:filtered_reads] += (a4s[:filtered_reads] || 0) - stats[:alignment][:bad_mate_reads] += (a4s[:bad_mate_reads] || 0) - stats[:alignment][:mapq0_reads] += (a4s[:mapq0_reads] || 0) - end - - if stats[:collection_uuid] - csv = CSV.parse IO. - popen("whget #{stats[:collection_uuid]}/SampleSheet.csv -"). - read - if !csv.empty? - pivoted = [] - csv[0].each_with_index do |head, col| - pivoted << csv.collect { |row| row[col] } - end - stats[:source_data_csv_columns] = pivoted - end - end - - picardas = stats[:picard_alignment_summary] - stats[:summary_csv_columns] = - [['PROJECT', stats[:project_name]], - ['SPECIMEN', stats[:specimen_id]], - ['VCF_FILE_NAME', stats[:vcf_file_name]], - ['INFERRED_SEX', stats[:inferred_sex]], - ['SOURCE_DATA', stats[:collection_uuid]], - ['PIPELINE_UUID', pi.pipeline_uuid], - ['PIPELINE_RUN_UUID', pi.uuid], - ['PIPELINE_RUN_START', (stats[:runtime][:started_at] rescue nil)], - ['PIPELINE_RUN_FINISH', (stats[:runtime][:finished_at] rescue nil)], - ['N_READS_RAW', - (n_raw = picardas[:total_reads].inject(0,:+) rescue nil)], - ['N_READS_MAPPED', - (n_mapped = picardas[:reads_aligned_in_pairs].inject(0,:+) rescue nil)], - ['PERCENT_READS_MAPPED', - (100.0 * n_mapped / n_raw rescue nil)], - ['N_READS_ON_TARGET', - (n_on_target = stats[:alignment][:total_reads] - stats[:alignment][:filtered_reads] rescue nil)], - ['PERCENT_READS_ON_TARGET', - (100.0 * n_on_target / n_raw rescue nil)], - ['PERCENT_TARGET_COVERAGE_1X', - (100.0 * stats[:coverage][1] / stats[:coverage][0] rescue nil)], - ['PERCENT_TARGET_COVERAGE_10X', - (100.0 * stats[:coverage][10] / stats[:coverage][0] rescue nil)], - ['PERCENT_TARGET_COVERAGE_20X', - (100.0 * stats[:coverage][20] / stats[:coverage][0] rescue nil)], - ['PERCENT_TARGET_COVERAGE_50X', - (100.0 * stats[:coverage][50] / stats[:coverage][0] rescue nil)], - ['PERCENT_TARGET_COVERAGE_100X', - (100.0 * stats[:coverage][100] / stats[:coverage][0] rescue nil)]] - - stats - end -end diff --git a/apps/workbench/app/helpers/virtual_machines_helper.rb b/apps/workbench/app/helpers/virtual_machines_helper.rb deleted file mode 100644 index cbb398d1b9..0000000000 --- a/apps/workbench/app/helpers/virtual_machines_helper.rb +++ /dev/null @@ -1,2 +0,0 @@ -module VirtualMachinesHelper -end diff --git a/apps/workbench/app/views/authorized_keys/_show_help.html.erb b/apps/workbench/app/views/authorized_keys/_show_help.html.erb deleted file mode 100644 index 42fff3cdf0..0000000000 --- a/apps/workbench/app/views/authorized_keys/_show_help.html.erb +++ /dev/null @@ -1,10 +0,0 @@ -

- More information about how to log in to VMs: -

- diff --git a/apps/workbench/test/unit/api_client_authorization_test.rb b/apps/workbench/test/unit/api_client_authorization_test.rb deleted file mode 100644 index b5b07d1f78..0000000000 --- a/apps/workbench/test/unit/api_client_authorization_test.rb +++ /dev/null @@ -1,7 +0,0 @@ -require 'test_helper' - -class ApiClientAuthorizationTest < ActiveSupport::TestCase - # test "the truth" do - # assert true - # end -end diff --git a/apps/workbench/test/unit/authorized_key_test.rb b/apps/workbench/test/unit/authorized_key_test.rb deleted file mode 100644 index b8d9b6786c..0000000000 --- a/apps/workbench/test/unit/authorized_key_test.rb +++ /dev/null @@ -1,7 +0,0 @@ -require 'test_helper' - -class AuthorizedKeyTest < ActiveSupport::TestCase - # test "the truth" do - # assert true - # end -end diff --git a/apps/workbench/test/unit/human_test.rb b/apps/workbench/test/unit/human_test.rb deleted file mode 100644 index 2863cbf7a2..0000000000 --- a/apps/workbench/test/unit/human_test.rb +++ /dev/null @@ -1,7 +0,0 @@ -require 'test_helper' - -class HumanTest < ActiveSupport::TestCase - # test "the truth" do - # assert true - # end -end diff --git a/apps/workbench/test/unit/job_task_test.rb b/apps/workbench/test/unit/job_task_test.rb deleted file mode 100644 index 3c7c1e7a6f..0000000000 --- a/apps/workbench/test/unit/job_task_test.rb +++ /dev/null @@ -1,7 +0,0 @@ -require 'test_helper' - -class JobTaskTest < ActiveSupport::TestCase - # test "the truth" do - # assert true - # end -end diff --git a/apps/workbench/test/unit/keep_disk_test.rb b/apps/workbench/test/unit/keep_disk_test.rb deleted file mode 100644 index 42ab63b8af..0000000000 --- a/apps/workbench/test/unit/keep_disk_test.rb +++ /dev/null @@ -1,4 +0,0 @@ -require 'test_helper' - -class KeepDiskTest < ActiveSupport::TestCase -end diff --git a/apps/workbench/test/unit/log_test.rb b/apps/workbench/test/unit/log_test.rb deleted file mode 100644 index f2afee2dc9..0000000000 --- a/apps/workbench/test/unit/log_test.rb +++ /dev/null @@ -1,7 +0,0 @@ -require 'test_helper' - -class LogTest < ActiveSupport::TestCase - # test "the truth" do - # assert true - # end -end diff --git a/apps/workbench/test/unit/node_test.rb b/apps/workbench/test/unit/node_test.rb deleted file mode 100644 index ccc3765dd9..0000000000 --- a/apps/workbench/test/unit/node_test.rb +++ /dev/null @@ -1,7 +0,0 @@ -require 'test_helper' - -class NodeTest < ActiveSupport::TestCase - # test "the truth" do - # assert true - # end -end diff --git a/apps/workbench/test/unit/pipeline_template_test.rb b/apps/workbench/test/unit/pipeline_template_test.rb deleted file mode 100644 index a28a2c9840..0000000000 --- a/apps/workbench/test/unit/pipeline_template_test.rb +++ /dev/null @@ -1,7 +0,0 @@ -require 'test_helper' - -class PipelineTemplateTest < ActiveSupport::TestCase - # test "the truth" do - # assert true - # end -end diff --git a/apps/workbench/test/unit/repository_test.rb b/apps/workbench/test/unit/repository_test.rb deleted file mode 100644 index 327170c108..0000000000 --- a/apps/workbench/test/unit/repository_test.rb +++ /dev/null @@ -1,7 +0,0 @@ -require 'test_helper' - -class RepositoryTest < ActiveSupport::TestCase - # test "the truth" do - # assert true - # end -end diff --git a/apps/workbench/test/unit/specimen_test.rb b/apps/workbench/test/unit/specimen_test.rb deleted file mode 100644 index a9abc8c776..0000000000 --- a/apps/workbench/test/unit/specimen_test.rb +++ /dev/null @@ -1,7 +0,0 @@ -require 'test_helper' - -class SpecimenTest < ActiveSupport::TestCase - # test "the truth" do - # assert true - # end -end diff --git a/apps/workbench/test/unit/trait_test.rb b/apps/workbench/test/unit/trait_test.rb deleted file mode 100644 index 45df2ed5be..0000000000 --- a/apps/workbench/test/unit/trait_test.rb +++ /dev/null @@ -1,7 +0,0 @@ -require 'test_helper' - -class TraitTest < ActiveSupport::TestCase - # test "the truth" do - # assert true - # end -end diff --git a/apps/workbench/test/unit/user_agreement_test.rb b/apps/workbench/test/unit/user_agreement_test.rb deleted file mode 100644 index 7c0ac65308..0000000000 --- a/apps/workbench/test/unit/user_agreement_test.rb +++ /dev/null @@ -1,7 +0,0 @@ -require 'test_helper' - -class UserAgreementTest < ActiveSupport::TestCase - # test "the truth" do - # assert true - # end -end diff --git a/apps/workbench/test/unit/virtual_machine_test.rb b/apps/workbench/test/unit/virtual_machine_test.rb deleted file mode 100644 index 69258b5d0d..0000000000 --- a/apps/workbench/test/unit/virtual_machine_test.rb +++ /dev/null @@ -1,7 +0,0 @@ -require 'test_helper' - -class VirtualMachineTest < ActiveSupport::TestCase - # test "the truth" do - # assert true - # end -end -- 2.39.5