From 0969c534741180e61ac318ffe799ac3512fc19d8 Mon Sep 17 00:00:00 2001 From: Ward Vandewege Date: Fri, 4 Sep 2015 22:37:05 -0400 Subject: [PATCH] Update docs to accomodate URL change for the Arvados redmine installation. It now lives at dev.arvados.org. refs #7187 --- doc/README.textile | 2 +- doc/_includes/_alert-incomplete.liquid | 2 +- doc/_includes/_alert_stub.liquid | 2 +- doc/_includes/_navbar_top.liquid | 2 +- doc/index.html.liquid | 8 ++++---- .../install-api-server.html.textile.liquid | 2 +- doc/install/install-docker.html.textile.liquid | 2 +- doc/sdk/go/index.html.textile.liquid | 4 ++-- .../firstpipeline.html.textile.liquid | 2 +- .../examples/crunch-examples.html.textile.liquid | 16 ++++++++-------- .../community.html.textile.liquid | 4 ++-- ...al-gatk-variantfiltration.html.textile.liquid | 2 +- .../tutorials/intro-crunch.html.textile.liquid | 2 +- .../running-external-program.html.textile.liquid | 6 +++--- 14 files changed, 28 insertions(+), 28 deletions(-) diff --git a/doc/README.textile b/doc/README.textile index 9d58dfeb63..f2936142c6 100644 --- a/doc/README.textile +++ b/doc/README.textile @@ -4,7 +4,7 @@ This is the source code for "doc.arvados.org":http://doc.arvados.org. Here's how to build the HTML pages locally so you can preview your updates before you commit and push. -Additional information is available on the "'Documentation' page on the Arvados wiki":https://arvados.org/projects/arvados/wiki/Documentation. +Additional information is available on the "'Documentation' page on the Arvados wiki":https://dev.arvados.org/projects/arvados/wiki/Documentation. h2. Install dependencies diff --git a/doc/_includes/_alert-incomplete.liquid b/doc/_includes/_alert-incomplete.liquid index 972ba15857..995c21711d 100644 --- a/doc/_includes/_alert-incomplete.liquid +++ b/doc/_includes/_alert-incomplete.liquid @@ -1,5 +1,5 @@

Hi!

-

This section is incomplete. Please be patient with us as we fill in the blanks — or contribute to the documentation project.

+

This section is incomplete. Please be patient with us as we fill in the blanks — or contribute to the documentation project.

diff --git a/doc/_includes/_alert_stub.liquid b/doc/_includes/_alert_stub.liquid index 4cc2498d65..97a520bb7d 100644 --- a/doc/_includes/_alert_stub.liquid +++ b/doc/_includes/_alert_stub.liquid @@ -1,5 +1,5 @@

Hi!

-

This section is incomplete. Please be patient with us as we fill in the blanks — or contribute to the documentation project.

+

This section is incomplete. Please be patient with us as we fill in the blanks — or contribute to the documentation project.

diff --git a/doc/_includes/_navbar_top.liquid b/doc/_includes/_navbar_top.liquid index 6d88b2b476..43cc99558f 100644 --- a/doc/_includes/_navbar_top.liquid +++ b/doc/_includes/_navbar_top.liquid @@ -16,7 +16,7 @@
  • SDKs
  • API
  • Install
  • -
  • arvados.org »
  • +
  • arvados.org »
  • diff --git a/doc/index.html.liquid b/doc/index.html.liquid index ca9bb5d1af..8cbf959fe6 100644 --- a/doc/index.html.liquid +++ b/doc/index.html.liquid @@ -26,12 +26,12 @@ title: Arvados | Documentation

    Arvados enables you to quickly begin using cloud computing resources in your data science work. It allows you to track your methods and datasets, share them securely, and easily re-run analyses.

    Communications -

    Read our blog updates or look through our recent developer activity. +

    Read our blog updates or look through our recent developer activity.

    Questions? Email the mailing list, or chat with us on IRC: #arvados @ OFTC (you can join in your browser).

    Want to contribute?

    -

    Check out our developer site. We're open source, check out our code on github. +

    Check out our developer site. We're open source, check out our code on github.

    License

    Arvados is under the copyleft GNU AGPL v3, with our SDKs under Apache License 2.0 (so that you can incorporate proprietary toolchains into your pipelines). @@ -41,7 +41,7 @@ title: Arvados | Documentation

    Quickstart

    - Try any pipeline from the list of public pipelines. For instance, the Pathomap Pipeline links to these step-by-step instructions for trying Arvados out right in your browser using Curoverse's public Arvados instance. + Try any pipeline from the list of public pipelines. For instance, the Pathomap Pipeline links to these step-by-step instructions for trying Arvados out right in your browser using Curoverse's public Arvados instance.

    @@ -60,7 +60,7 @@ title: Arvados | Documentation Pipeline Developer Quickstart

    - Want to port your pipeline to Arvados? Check out the step-by-step Port-a-Pipeline guide on the Arvados wiki. + Want to port your pipeline to Arvados? Check out the step-by-step Port-a-Pipeline guide on the Arvados wiki.

    More in-depth guides

    diff --git a/doc/install/install-api-server.html.textile.liquid b/doc/install/install-api-server.html.textile.liquid index d2b7566b7d..f2a518a244 100644 --- a/doc/install/install-api-server.html.textile.liquid +++ b/doc/install/install-api-server.html.textile.liquid @@ -86,7 +86,7 @@ h2(#configure_application). Configure the API server Edit @/etc/arvados/api/application.yml@ to configure the settings described in the following sections. The deployment script will consistently deploy this to the API server's configuration directory. The API server reads both @application.yml@ and its own @config/application.default.yml@ file. The settings in @application.yml@ take precedence over the defaults that are defined in @config/application.default.yml@. The @config/application.yml.example@ file is not read by the API server and is provided as a starting template only. -@config/application.default.yml@ documents additional configuration settings not listed here. You can "view the current source version":https://arvados.org/projects/arvados/repository/revisions/master/entry/services/api/config/application.default.yml for reference. +@config/application.default.yml@ documents additional configuration settings not listed here. You can "view the current source version":https://dev.arvados.org/projects/arvados/repository/revisions/master/entry/services/api/config/application.default.yml for reference. Only put local configuration in @application.yml@. Do not edit @application.default.yml@. diff --git a/doc/install/install-docker.html.textile.liquid b/doc/install/install-docker.html.textile.liquid index 1566e80a9c..922c32990b 100644 --- a/doc/install/install-docker.html.textile.liquid +++ b/doc/install/install-docker.html.textile.liquid @@ -24,7 +24,7 @@ h2. Download the source tree ~$ git clone https://github.com/curoverse/arvados.git -See also: "Downloading the source code":https://arvados.org/projects/arvados/wiki/Download on the Arvados wiki. +See also: "Downloading the source code":https://dev.arvados.org/projects/arvados/wiki/Download on the Arvados wiki. h2. Building the Arvados Docker containers diff --git a/doc/sdk/go/index.html.textile.liquid b/doc/sdk/go/index.html.textile.liquid index 58446a9eda..24873318da 100644 --- a/doc/sdk/go/index.html.textile.liquid +++ b/doc/sdk/go/index.html.textile.liquid @@ -14,7 +14,7 @@ You don't need to install anything. Just import the client like this. The go too {% code 'example_sdk_go_imports' as go %} -If you need pre-release client code, you can use the latest version from the repo by following "these instructions.":https://arvados.org/projects/arvados/wiki/Go#Using-Go-with-Arvados +If you need pre-release client code, you can use the latest version from the repo by following "these instructions.":https://dev.arvados.org/projects/arvados/wiki/Go#Using-Go-with-Arvados h3. Example @@ -22,4 +22,4 @@ You can save this source as a .go file and run it: {% code 'example_sdk_go' as go %} -A few more usage examples can be found in the "services/keepproxy":https://arvados.org/projects/arvados/repository/revisions/master/show/services/keepproxy and "sdk/go/keepclient":https://arvados.org/projects/arvados/repository/revisions/master/show/sdk/go/keepclient directories in the arvados source tree. +A few more usage examples can be found in the "services/keepproxy":https://dev.arvados.org/projects/arvados/repository/revisions/master/show/services/keepproxy and "sdk/go/keepclient":https://dev.arvados.org/projects/arvados/repository/revisions/master/show/sdk/go/keepclient directories in the arvados source tree. diff --git a/doc/start/getting_started/firstpipeline.html.textile.liquid b/doc/start/getting_started/firstpipeline.html.textile.liquid index d5d7f9800b..8e446b527b 100644 --- a/doc/start/getting_started/firstpipeline.html.textile.liquid +++ b/doc/start/getting_started/firstpipeline.html.textile.liquid @@ -8,7 +8,7 @@ h2. LobSTR v3 In this quickstart guide, we'll run an existing pipeline with pre-existing data. Step-by-step instructions are shown below. You can follow along using your own local install or by using Curoverse's hosted version of Arvados (in public beta, any Google account can be used to login). -(For more information about this pipeline, see our detailed lobSTR guide). +(For more information about this pipeline, see our detailed lobSTR guide).