From 005928e7cbe6abbe418588f3eb652b3dee16e544 Mon Sep 17 00:00:00 2001
From: Peter Amstutz <peter.amstutz@curoverse.com>
Date: Tue, 11 Mar 2014 11:38:58 -0400
Subject: [PATCH] Finished first draft of tutorial running pipeline from
 workbench.

---
 doc/css/nav-list.css                          |  4 ++++
 ...ial-pipeline-workbench.html.textile.liquid | 24 +++++++++++++------
 2 files changed, 21 insertions(+), 7 deletions(-)

diff --git a/doc/css/nav-list.css b/doc/css/nav-list.css
index df79492a63..7ec25e4014 100644
--- a/doc/css/nav-list.css
+++ b/doc/css/nav-list.css
@@ -22,3 +22,7 @@
   text-shadow: 0 -1px 0 rgba(0,0,0,.2);
   background-color: rgb(66, 139, 202);
 }
+
+.spaced-out li {
+   padding-bottom: 1em; 
+}
\ No newline at end of file
diff --git a/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid b/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid
index fbe6786b52..52dafb7cce 100644
--- a/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid
+++ b/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid
@@ -4,12 +4,22 @@ navsection: userguide
 title: "Running a pipeline using Workbench"
 ...
 
-# Go to "Collections":http://{{ site.arvados_workbench_host }}/collections
-# Go to the search box <span class="glyphicon glyphicon-search"></span> and search for "tutorial".
+notextile. <div class="spaced-out">
+
+# Go to "Collections":http://{{ site.arvados_workbench_host }}/collections .
+# On the collections page, go to the search box <span class="glyphicon glyphicon-search"></span> and search for "tutorial".
 # This should yield a collection with the contents "var-GS000016015-ASM.tsv.bz2"
-# Click on the check box to the left of "var-GS000016015-ASM.tsv.bz2".  This puts the collection in your persistent selection list.  Click on the paperclip <span class="glyphicon glyphicon-paperclip"></span> in the upper right to see your selections.
-# Click on "Pipeline templates":http://{{ site.arvados_workbench_host }}/pipeline_templates
-# Look for a pipeline named "Tutorial pipeline"
-# Click on the play button <span class="glyphicon glyphicon-play"></span> on the left.  This will take you to the new pipeline page.
-# Next to "input" click on "none" to set the input value.  At the top of the list will be the collection that you selected in step 4.
+# Click on the check box to the left of "var-GS000016015-ASM.tsv.bz2".  This puts the collection in your persistent selection list.  Click on the paperclip <span class="glyphicon glyphicon-paperclip"></span> in the upper right to get a dropdown menu listing your current selections.
+# Go to "Pipeline templates":http://{{ site.arvados_workbench_host }}/pipeline_templates .
+# Look for a pipeline named "Tutorial pipeline".
+# Click on the play button <span class="glyphicon glyphicon-play"></span> to the left of "Tutorial pipeline".  This will take you to a new page to configure the pipeline.
+# Under *parameter* look for "input".  Set the value of "input" by clicking on on "none" to get a editing popup.  At the top of the selection list in the editing popup will be the collection that you selected in step 4.
 # You can now click on "Run pipeline" in the upper right to start the pipeline.
+# This will reload the page with the pipeline queued to run.
+# The page refreshes automatically every 15 seconds.  You should see the pipeline running, and then finish successfully.
+# Once it is finished, click on the link under the *output* column.  This will take you to the collection page for the output of this pipeline.
+# Click on "md5sum.txt" to see the actual file that is the output of this pipeline.
+# On the collection page, click on the "Provenance graph" tab to see a graphical representation of the data elements and pipelines that were involved in generating this file.
+
+notextile. </div>
+
-- 
2.30.2