Peter Amstutz [Thu, 13 Aug 2020 19:22:49 +0000 (15:22 -0400)]
16683: Check that remote cluster id is presumed valid, add test
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 12 Aug 2020 21:32:06 +0000 (17:32 -0400)]
16683: Permit granting permissions to remote users
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 12 Aug 2020 20:20:19 +0000 (16:20 -0400)]
16683: Sharing dialog query is compatible with federated user list
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 12 Aug 2020 20:10:32 +0000 (16:10 -0400)]
16683: Set and check ForwardedFor on federated list requests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 13 Aug 2020 21:21:35 +0000 (17:21 -0400)]
Merge federation-migrate fixes refs #16589
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 22 Jul 2020 18:58:59 +0000 (14:58 -0400)]
16623: Add NetworkResourceGroup option for Azure
refs #16623
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Ward Vandewege [Wed, 12 Aug 2020 14:19:07 +0000 (10:19 -0400)]
documentation: disable download buffering in our sample nginx config for
keep-web and keepproxy. This helps when the clients are far away/slow.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Mon, 10 Aug 2020 17:53:44 +0000 (13:53 -0400)]
The arvados k8s repo has changed name.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Wed, 29 Jul 2020 21:36:30 +0000 (17:36 -0400)]
documentation: mention API/MaxKeepBlobBuffers on the Keepstore
installation page.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Fri, 24 Jul 2020 21:13:49 +0000 (17:13 -0400)]
documentation: arvados-dispatch-cloud: add missing curl command.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Tue, 7 Jul 2020 13:27:43 +0000 (09:27 -0400)]
Documentation: fix nginx snippets, remove warnings.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Thu, 25 Jun 2020 16:04:20 +0000 (12:04 -0400)]
6649: Document webshell installation.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Fri, 26 Jun 2020 00:38:04 +0000 (20:38 -0400)]
Documentation: add missing span in the 'Set up a shell node' page, to
fix coloration bug in the 'Create scoped token' section.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Lucas Di Pentima [Tue, 23 Jun 2020 17:09:50 +0000 (14:09 -0300)]
Fixes template usage on SSO install page.
No issue #
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Ward Vandewege [Mon, 22 Jun 2020 16:08:24 +0000 (12:08 -0400)]
Make it clear that the API token is used by all Arvados command line
tools, not just the 'arv' tool.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Peter Amstutz [Fri, 19 Jun 2020 21:20:59 +0000 (17:20 -0400)]
Add links to the Arvados forum refs #16521
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 12 Jun 2020 14:13:24 +0000 (10:13 -0400)]
16524: Pin rsa package to < 4.1
Because >= 4.1 does not support python 2 any more. refs #16524
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Wed, 13 May 2020 21:07:11 +0000 (17:07 -0400)]
16391: Fix log message.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Lucas Di Pentima [Fri, 5 Jun 2020 18:13:44 +0000 (15:13 -0300)]
16492: Upgrades websocket-extensions gem to fix a security alert.
We really don't use this gem as it's requested by actioncable from Rails 5
that we don't even load at runtime. But, as we cannot remove actioncable
from our Gemfile.lock files because of some other gems depending on 'rails',
we upgrade it to make GitHub happy.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Peter Amstutz [Mon, 11 May 2020 15:08:01 +0000 (11:08 -0400)]
16339: Fix $schemas rewriting bug
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Ward Vandewege [Mon, 13 Apr 2020 21:57:03 +0000 (17:57 -0400)]
16328: If config.yml is available, use the keepstores defined there instead of
the legacy autodiscover mechanism via the API server.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>
Lucas Di Pentima [Tue, 21 Apr 2020 16:55:10 +0000 (13:55 -0300)]
16341: Upgrades rack on API & Workbench.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Dante Tsang [Mon, 20 Apr 2020 10:23:56 +0000 (18:23 +0800)]
Fixed FetchAll method for Container queue in order to make use of preemptible instance
Updated AUTHORS file
Arvados-DCO-1.1-Signed-off-by: Dante Tsang <dante@dantetsang.com>
Ward Vandewege [Fri, 1 May 2020 20:55:01 +0000 (16:55 -0400)]
16393: keepproxy used cluster.API.KeepServiceRequestTimeout (defaults to
15s) as the timeout on its connection to the keepstores. When a slow client
sends blocks to keepproxy, they get streamed through to keepstore, and
the upload can take more than cluster.API.KeepServiceRequestTimeout
seconds. Update keepproxy to use keepclient.DefaultProxyRequestTimeout
(300s) instead when it connects to the keepstores.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>
Tom Clegg [Wed, 29 Apr 2020 19:37:32 +0000 (15:37 -0400)]
16349: Set time zone to UTC at db connection level.
This covers the trash time comparisons in materialized_permission_view
as well as explicit uses of CURRENT_TIMESTAMP in Rails queries.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 27 Apr 2020 20:57:55 +0000 (16:57 -0400)]
16349: Skip converting DB timestamps to & from localtime.
The previous code already returned the correct time. This change
merely avoids converting the time to the local time zone in
PostgreSQL, and back to UTC again in Rails.
This might also avoid rare problems in unusual edge cases where Rails
and PostgreSQL session use different time zones, like a configuration
mishap or a race during a daylight savings time transition.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 27 Apr 2020 20:37:49 +0000 (16:37 -0400)]
16349: Fix TZ-sensitive comparison in token expiry checks.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 22 Apr 2020 20:50:06 +0000 (16:50 -0400)]
16343: Fix handling of local CR creation when LoginCluster is used.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 22 Apr 2020 20:31:06 +0000 (16:31 -0400)]
16343: Add debug logs in token checking code.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Tue, 28 Apr 2020 20:44:30 +0000 (16:44 -0400)]
16366: "InternalURLs" and "AccessViaHosts" are consistent in install
refs #16366
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Ward Vandewege [Fri, 15 May 2020 00:39:13 +0000 (20:39 -0400)]
16434: the python3-arvados-cwl-runner packages on Debian 10 and Ubuntu
18.04 (and later, presumably) have a dependency on the
python3-distutils package.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>
Ward Vandewege [Fri, 15 May 2020 00:40:14 +0000 (20:40 -0400)]
Fix comment typos in run-library.sh
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>
Ward Vandewege [Fri, 15 May 2020 00:40:55 +0000 (20:40 -0400)]
16434: add a basic execution test for the python3-arvados-cwl-runner packages
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>
Tom Clegg [Wed, 6 May 2020 19:39:30 +0000 (15:39 -0400)]
16387: Allow setting is_active=false only on LoginCluster users.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 4 May 2020 14:53:21 +0000 (10:53 -0400)]
16387: Allow batch update to set is_active=false for a remote user.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Fri, 1 May 2020 19:58:58 +0000 (15:58 -0400)]
Add StartedAt and FinishedAt fields to arvados.Container.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Ward Vandewege [Fri, 15 May 2020 00:57:49 +0000 (20:57 -0400)]
bugfix: fix arvados-node-manager package build
refs #16373
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>
Ward Vandewege [Thu, 7 May 2020 14:20:50 +0000 (10:20 -0400)]
Bugfix: make the arvados-docker-cleaner packages install their systemd
unit file in the correct directory.
closes #16373
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>
Lucas Di Pentima [Thu, 21 May 2020 23:08:40 +0000 (20:08 -0300)]
16435: Updates the documentation.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 21 May 2020 22:00:37 +0000 (19:00 -0300)]
16435: Adds & updates tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 21 May 2020 21:11:10 +0000 (18:11 -0300)]
16435: Avoids creating duplicated group->user links.
When a user needs a permission change, the g->u link already exists.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 21 May 2020 19:21:12 +0000 (16:21 -0300)]
16435: Adds support for different permission levels: read, write & manage.
If the 3rd field isn't present on any record, it will fallback to 'can_write'
to maintain backwards compatibility.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Wed, 20 May 2020 21:23:08 +0000 (18:23 -0300)]
16435: Allows 2 or 3 fields per record on the CSV file.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Peter Amstutz [Thu, 21 May 2020 13:51:03 +0000 (09:51 -0400)]
16419: Use CAINFO instead of CAPATH
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Pjotr Prins [Wed, 20 May 2020 19:35:54 +0000 (14:35 -0500)]
keep.py: python-api https certificate align pycurl with httplib2 certificate finder
Arvados-DCO-1.1-Signed-off-by: Pjotr Prins <pjotr.public01@thebird.nl>
Pjotr Prins [Wed, 20 May 2020 16:12:20 +0000 (11:12 -0500)]
util.py: python-api https certificate openssl override as is used in GNU Guix
Arvados-DCO-1.1-Signed-off-by: Pjotr Prins <pjotr.public01@thebird.nl>
Ward Vandewege [Thu, 30 Apr 2020 19:32:57 +0000 (15:32 -0400)]
Arvados on Kubernetes now has workbench2 as well.
closes #16384
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>
Ward Vandewege [Mon, 27 Apr 2020 19:58:34 +0000 (15:58 -0400)]
Updated Arvados on Kubernetes documentation.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>
Peter Amstutz [Thu, 5 Mar 2020 23:00:15 +0000 (18:00 -0500)]
Pin version of launchy gem while we still support Ruby 2.3
refs #16215
Need to do it for login-sync too.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 5 Mar 2020 21:27:33 +0000 (16:27 -0500)]
Pin version of launchy gem while we still support Ruby 2.3
refs #16215
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Lucas Di Pentima [Mon, 13 Apr 2020 18:34:12 +0000 (15:34 -0300)]
16313: Updates minimum requestd ram on docker containers from 4 to 16 MB.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Peter Amstutz [Mon, 13 Apr 2020 18:38:15 +0000 (14:38 -0400)]
Bump mithril for advisory https://npmjs.com/advisories/1094
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 13 Apr 2020 18:00:32 +0000 (14:00 -0400)]
Pin jssha to 2.4.2
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 13 Apr 2020 14:25:11 +0000 (10:25 -0400)]
16263: Add test for BypassFederation
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Lucas Di Pentima [Mon, 6 Apr 2020 14:01:18 +0000 (11:01 -0300)]
16263: Pulls from official git repo when running federation tests.
This is helpful to ask for specific branches that aren't published on github.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Peter Amstutz [Thu, 2 Apr 2020 14:52:44 +0000 (10:52 -0400)]
16263: User migration test also checks federated user behavior
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 1 Apr 2020 01:03:42 +0000 (21:03 -0400)]
16263: Tweak federation tests, use CWL 1.1
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 31 Mar 2020 21:42:03 +0000 (17:42 -0400)]
16263: Add bypass_federation test
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 31 Mar 2020 21:16:57 +0000 (17:16 -0400)]
16263: Fix no_federation -> bypass_federation in boolParms
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 31 Mar 2020 21:12:31 +0000 (17:12 -0400)]
16263: Fix only_admin_can_bypass_federation
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 31 Mar 2020 20:45:49 +0000 (16:45 -0400)]
16263: Missed rename
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 31 Mar 2020 20:33:27 +0000 (16:33 -0400)]
16263: Rename no_federation -> bypass_federation
Enforce if bypass_federation is true that user is admin.
Update API revision and make federation migrate check for it.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 31 Mar 2020 18:42:46 +0000 (14:42 -0400)]
16263: Add no_federation to user update
We might agree on a different API but try this and see if it helps
pass the test.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 31 Mar 2020 02:30:10 +0000 (22:30 -0400)]
16263: local_user_list -> no_federation in boolParams
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 31 Mar 2020 02:14:23 +0000 (22:14 -0400)]
16263: Generalize "local_user_list" flag to "no_federation"
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 30 Mar 2020 21:12:17 +0000 (17:12 -0400)]
16263: UserMerge shouldn't be federated
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 30 Mar 2020 18:50:06 +0000 (14:50 -0400)]
16263: Fix omitempty placement
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 30 Mar 2020 18:43:36 +0000 (14:43 -0400)]
16263: Add omitempty to GetOptions
Don't try to migrate if activate_remote_user fails.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Sat, 28 Mar 2020 01:36:09 +0000 (21:36 -0400)]
16263: Add local_user_list to boolParams
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 27 Mar 2020 21:08:48 +0000 (17:08 -0400)]
16263: Add local_user_list flag to bypass LoginCluster behavior
Required by federation migrate script.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Lucas Di Pentima [Thu, 26 Mar 2020 14:46:34 +0000 (11:46 -0300)]
16263: Decodes JSON numbers as strings instead of float64.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Wed, 25 Mar 2020 19:35:18 +0000 (16:35 -0300)]
16263: Adds unit test case confirming 'limit' bug.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Wed, 25 Mar 2020 14:26:55 +0000 (11:26 -0300)]
16263: Adds test exposing a bug when using 'limit' with the max int64 value.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 24 Mar 2020 20:39:01 +0000 (17:39 -0300)]
16263: Bool filter bug fix.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 24 Mar 2020 21:03:34 +0000 (18:03 -0300)]
16263: Adds test exposing a bug on filter unmarshalling.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 23 Mar 2020 19:20:41 +0000 (16:20 -0300)]
16263: Makes gofmt happy.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 23 Mar 2020 18:32:59 +0000 (15:32 -0300)]
16263: Don't cache modified_by_*_uuid fields when using LoginCluster.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 23 Mar 2020 15:27:18 +0000 (12:27 -0300)]
16263: Adds nullify behavior to users's batch_update endpoint.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 19 Mar 2020 21:15:52 +0000 (18:15 -0300)]
16263: Assigns nil to select attributes when receiving empty values.
Controller may translate NULL values to "" on certain object string fields.
The same with integers, NULLs are converted to 0.
When controller retrieves objects from railsAPI and uses the data to create
or update objects, some of those fields should get converted back to NULL.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Ward Vandewege [Fri, 10 Apr 2020 12:56:56 +0000 (08:56 -0400)]
Fix tests.
refs #16326
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>
Ward Vandewege [Thu, 9 Apr 2020 21:53:31 +0000 (17:53 -0400)]
documentation: update descriptions for MaxKeepBlobBuffers and MaxConcurrentRequests
keepstore: MaxConcurrentRequests set to zero should mean no limit
refs #16326
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>
Tom Clegg [Thu, 9 Apr 2020 20:58:36 +0000 (16:58 -0400)]
Warn if MaxKeepBlobBuffers > MaxConcurrentRequests.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 5 Mar 2020 21:42:39 +0000 (16:42 -0500)]
16219: Test populated container fields.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 5 Mar 2020 19:44:22 +0000 (14:44 -0500)]
16219: Load all fields needed to compute node size.
Without ContainerImage and Mounts, the scratch size requirement can't
be computed correctly.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 12 Mar 2020 04:15:16 +0000 (00:15 -0400)]
16221: Fix test for config endpoint.
x['configs'] raises KeyError on an old discovery doc -- test
x.get('configs', False) instead.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 11 Mar 2020 20:52:04 +0000 (16:52 -0400)]
Fix instance IDs in arvados-dispatch-cloud log messages.
Some logs had {"Instance": {}} instead of the provider's instance ID.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 1 Apr 2020 20:44:02 +0000 (16:44 -0400)]
16270: Fill in missing scratch fields on InstanceType entries.
Previously they were being filled in correctly when written as an
array in the config file, but not when written as a map.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
dependabot[bot] [Tue, 3 Mar 2020 21:27:27 +0000 (21:27 +0000)]
Bump rake from 12.3.2 to 13.0.1 in /services/api
Bumps [rake](https://github.com/ruby/rake) from 12.3.2 to 13.0.1.
- [Release notes](https://github.com/ruby/rake/releases)
- [Changelog](https://github.com/ruby/rake/blob/master/History.rdoc)
- [Commits](https://github.com/ruby/rake/compare/v12.3.2...v13.0.1)
Signed-off-by: dependabot[bot] <support@github.com>
dependabot[bot] [Tue, 3 Mar 2020 21:27:30 +0000 (21:27 +0000)]
Bump rake from 12.3.2 to 13.0.1 in /apps/workbench
Bumps [rake](https://github.com/ruby/rake) from 12.3.2 to 13.0.1.
- [Release notes](https://github.com/ruby/rake/releases)
- [Changelog](https://github.com/ruby/rake/blob/master/History.rdoc)
- [Commits](https://github.com/ruby/rake/compare/v12.3.2...v13.0.1)
Signed-off-by: dependabot[bot] <support@github.com>
dependabot[bot] [Tue, 25 Feb 2020 08:04:58 +0000 (08:04 +0000)]
Bump nokogiri from 1.10.4 to 1.10.8 in /apps/workbench
Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.10.4 to 1.10.8.
- [Release notes](https://github.com/sparklemotion/nokogiri/releases)
- [Changelog](https://github.com/sparklemotion/nokogiri/blob/master/CHANGELOG.md)
- [Commits](https://github.com/sparklemotion/nokogiri/compare/v1.10.4...v1.10.8)
Signed-off-by: dependabot[bot] <support@github.com>
dependabot[bot] [Fri, 8 Nov 2019 21:48:47 +0000 (21:48 +0000)]
Bump loofah from 2.2.3 to 2.3.1 in /apps/workbench
Bumps [loofah](https://github.com/flavorjones/loofah) from 2.2.3 to 2.3.1.
- [Release notes](https://github.com/flavorjones/loofah/releases)
- [Changelog](https://github.com/flavorjones/loofah/blob/master/CHANGELOG.md)
- [Commits](https://github.com/flavorjones/loofah/compare/v2.2.3...v2.3.1)
Signed-off-by: dependabot[bot] <support@github.com>
dependabot[bot] [Tue, 25 Feb 2020 08:04:57 +0000 (08:04 +0000)]
Bump nokogiri from 1.10.2 to 1.10.8 in /services/api
Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.10.2 to 1.10.8.
- [Release notes](https://github.com/sparklemotion/nokogiri/releases)
- [Changelog](https://github.com/sparklemotion/nokogiri/blob/master/CHANGELOG.md)
- [Commits](https://github.com/sparklemotion/nokogiri/compare/v1.10.2...v1.10.8)
Signed-off-by: dependabot[bot] <support@github.com>
Lucas Di Pentima [Mon, 23 Mar 2020 21:07:56 +0000 (18:07 -0300)]
16266: Applies monkeypatch to fix CVE-2020-5267 on workbench1.
As adviced on https://github.com/advisories/GHSA-65cv-r6x7-79hv
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 26 Mar 2020 16:29:40 +0000 (13:29 -0300)]
16266: Adds tests exposing potential XSS vulnerability on escape_javascript()
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Peter Amstutz [Tue, 24 Mar 2020 19:35:38 +0000 (15:35 -0400)]
16138: Remove additional/code references to copying pipelines
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 23 Mar 2020 15:00:07 +0000 (11:00 -0400)]
16138: Remove additional pipelines related code
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 20 Mar 2020 19:47:00 +0000 (15:47 -0400)]
16138: whitelist fields for arv-copy
Also removed code for copying
PipelineTemplate/PipelineInstance (obsolete jobs API).
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 3 Mar 2020 21:17:38 +0000 (16:17 -0500)]
Remove Gemfile.lock from login-sync
no issue #
To be consistent with sdk/ruby sdk/cli behavior.
There's a circular dependency where the version number of the gem is
embedded in Gemfile.lock, but the version number is derived from the
git commit timestamp, so when it updates Gemfile.lock it creates a new
version, which requires a updating Gemfile.lock, and so on.
However, unlike the Ruby on Rails deb/rpm packages, when we create
gems (dev or production) it does not include Gemfile.lock, so there's
no benefit to having it checked in.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 3 Mar 2020 20:34:05 +0000 (15:34 -0500)]
Ruby gems respect ARVADOS_BUILDING_VERSION
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 27 Feb 2020 18:56:49 +0000 (13:56 -0500)]
Nodemanager and crunchstat-summary sync with pysdk version
refs #16151
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
projects / arvados.git / log