Ward Vandewege [Wed, 5 Jun 2019 16:49:27 +0000 (12:49 -0400)]
Crunch-job needs to call the python executable from our sdk package for
collating job output.
refs #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Mon, 3 Jun 2019 19:14:37 +0000 (15:14 -0400)]
Do not blow up when Rails.configuration.Users.UserProfileNotificationAddress is
set to the empty string, which is the default since #13996 (it defaulted to a
dummy e-mail adress before).
refs #15286
refs #13996
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 31 May 2019 19:42:37 +0000 (15:42 -0400)]
Update the 'upgrading' documentation to reflect the v1.4.0 release, and warn
about the db migration that can take some time during upgrade.
refs #15093
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 31 May 2019 19:30:34 +0000 (15:30 -0400)]
Merge branch '15093-move-collection-update-out-of-band' into 1.4-dev
closes #15093
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 31 May 2019 19:27:38 +0000 (15:27 -0400)]
Address review comments.
refs #15093
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 31 May 2019 18:51:50 +0000 (14:51 -0400)]
Move the population of the new columns on the collections table to a standalone
script that should be run separate from the migration. Add a note to the
upgrade documentation along those lines. Make the script not blow up on
collections with invalid manifests, but rather just skip them.
refs #15093
refs #14484
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Tue, 23 Apr 2019 22:01:55 +0000 (18:01 -0400)]
Fix reporting logs on container requests refs #15028
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 28 May 2019 18:05:47 +0000 (14:05 -0400)]
Merge branch '14878-priority-race'
fixes #14878
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 28 May 2019 18:05:05 +0000 (14:05 -0400)]
14878: Add comment.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Tue, 28 May 2019 15:41:51 +0000 (12:41 -0300)]
Merge branch '15275-attribute-dirtyness-bugfix'
Closes #15275
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 28 May 2019 15:04:35 +0000 (11:04 -0400)]
14878: Skip flock() when testing priority updater.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Tue, 28 May 2019 14:27:43 +0000 (11:27 -0300)]
15275: Adds test for different jsonb properties comparisons cases.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 24 May 2019 21:11:23 +0000 (18:11 -0300)]
15275: Checks for jsonb types changes by comparing deserialized values.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Fri, 24 May 2019 20:31:49 +0000 (16:31 -0400)]
arvbox use lowercase keys for database connection params refs #15273
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Fri, 24 May 2019 18:34:01 +0000 (15:34 -0300)]
Merge branch 'master' into 15275-attribute-dirtyness-bugfix
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 24 May 2019 18:33:13 +0000 (15:33 -0300)]
15275: Re-adds the test exposing this branch's particular bug.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 24 May 2019 18:11:34 +0000 (15:11 -0300)]
Merge branch '15275-collection-delete-bugfix'. Refs #15275
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 24 May 2019 18:00:40 +0000 (15:00 -0300)]
15275: Simplifies method code.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 24 May 2019 17:58:59 +0000 (14:58 -0300)]
15275: Don't create snapshots whenever is_trashed is true.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 24 May 2019 15:36:54 +0000 (12:36 -0300)]
15275: Don't create snapshot when trashing collection.
Also, skips test about bogus properties field changes, for now.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 24 May 2019 13:55:14 +0000 (10:55 -0300)]
15275: Adds another test exposing the jsonb changed field bug.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 24 May 2019 13:31:40 +0000 (10:31 -0300)]
15275: Moves comment to its proper place.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 24 May 2019 01:22:02 +0000 (22:22 -0300)]
15275: Avoids running manage_versioning when not needed.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 23 May 2019 23:07:13 +0000 (20:07 -0300)]
15275: Saves snapshot as system user instead of assigning a signed manifest to it
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 23 May 2019 22:53:12 +0000 (19:53 -0300)]
15725: Adds test exposing 2 issues when trashing collections with versioning
1) Snapshot being created when deleting a collection
2) Permission denied error when trying to create the new snapshot
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Thu, 23 May 2019 18:45:35 +0000 (14:45 -0400)]
Make sure that the libpam-arvados package puts its various files in the place
where the pam subsystem will expect them, not inside the virtualenv.
Also, remove the code from sdk/pam/setup.py that installed a copy of the
libpam-arvados.py file under /usr/data/lib/security/libpam_arvados.py for
legacy reasons.
refs #9945
refs #15186
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Thu, 23 May 2019 18:23:54 +0000 (14:23 -0400)]
Merge branch '15273-db-conn-keys'
fixes #15273
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 23 May 2019 18:23:26 +0000 (14:23 -0400)]
15273: Fix key-conflict test.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 23 May 2019 17:42:37 +0000 (13:42 -0400)]
15273: Use lowercase keys for database connection params.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 23 May 2019 15:27:26 +0000 (11:27 -0400)]
Merge branch '15003-disable-config-warnings'
refs #15003
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Thu, 23 May 2019 14:03:13 +0000 (11:03 -0300)]
Merge branch '15258-wb-report-issue-bugfix'
Closes #15258
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Thu, 23 May 2019 13:31:40 +0000 (09:31 -0400)]
15003: Temporarily disable config warnings.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Thu, 23 May 2019 13:14:21 +0000 (10:14 -0300)]
15258: Explicitly require libs instead of relying on autoloading.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 23 May 2019 12:52:10 +0000 (09:52 -0300)]
15258: Removes /lib from eager load paths because of failing integration tests.
PhantomJS started to randomly fail, maybe because of memory or timing reasons.
This change exposes the bug observed on production, on development & test envs.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Wed, 22 May 2019 21:31:48 +0000 (17:31 -0400)]
Increase client_max_body_size in arvbox to support file uploads.
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Wed, 22 May 2019 19:57:19 +0000 (16:57 -0300)]
15258: Adds /lib to the eager_load paths.
On rails 5.0 the autoload paths stopped working on production environments
for thread safety concerns.
See: https://github.com/rails/rails/commit/
a71350cae0082193ad8c66d65ab62e8bb0b7853b
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Tue, 21 May 2019 17:27:41 +0000 (13:27 -0400)]
While our Python SDK now supports Python 3.4+, our FUSE driver does not yet. On
the FUSE driver installation page, we should be mentioning the latter, not the
former.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Tue, 21 May 2019 14:36:24 +0000 (10:36 -0400)]
Our Python SDK now also supports version 3.4+, update the fuse drive doc page
accordingly.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Mon, 20 May 2019 20:42:11 +0000 (16:42 -0400)]
Fix cwl tests refs #15241
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 20 May 2019 19:48:27 +0000 (15:48 -0400)]
Merge branch '15241-collection-input' refs #15241
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 20 May 2019 19:46:17 +0000 (15:46 -0400)]
15241: Fix input bare collection as directory
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Fri, 17 May 2019 17:31:29 +0000 (14:31 -0300)]
Merge branch '14988-wb-rails5-upgrade'
Closes #14988
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 17 May 2019 17:30:33 +0000 (14:30 -0300)]
Merge branch '15227-apiserver-properties-bugfix'
Closes #15227
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Fri, 17 May 2019 15:55:31 +0000 (11:55 -0400)]
Update the note about supported Python versions for Arv SDK.
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Fri, 17 May 2019 14:42:19 +0000 (11:42 -0300)]
14988: Restores debug message when accessing non-loaded attributes.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Fri, 17 May 2019 14:18:13 +0000 (10:18 -0400)]
Add user email and cancel button to federated user redirect page
refs #15061
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Fri, 17 May 2019 13:28:13 +0000 (10:28 -0300)]
14988: Fixes destroyed? method to return false on new records.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 17 May 2019 00:20:33 +0000 (21:20 -0300)]
15227: Fixes type checking on json attributes.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 17 May 2019 00:19:57 +0000 (21:19 -0300)]
15227: More tests to expose the bug.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Wed, 15 May 2019 21:05:55 +0000 (17:05 -0400)]
Merge branch '15232-blobttl-suffix'
fixes #15232
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 15 May 2019 20:25:01 +0000 (17:25 -0300)]
Syncs up generated config.
No issue #
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Wed, 15 May 2019 20:09:48 +0000 (16:09 -0400)]
Merge branch '15061-fed-migrate' refs #15061
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 15 May 2019 18:38:15 +0000 (14:38 -0400)]
15061: Code cleanup, improve validity checking & error handling
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Wed, 15 May 2019 18:50:24 +0000 (15:50 -0300)]
15227: Adds test exposing bug.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Wed, 15 May 2019 18:02:33 +0000 (14:02 -0400)]
15232: Fix type of Collections.BlobSigningTTL config key.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 15 May 2019 16:54:22 +0000 (13:54 -0300)]
Merge branch '15167-unlogged-attrs-api-docs'
Closes #15167
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Wed, 15 May 2019 14:59:46 +0000 (10:59 -0400)]
Merge branch '15003-preprocess-config'
refs #15003
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 15 May 2019 13:57:36 +0000 (09:57 -0400)]
15003: Merge branch 'master' into 15003-preprocess-config
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Ward Vandewege [Tue, 14 May 2019 21:33:33 +0000 (17:33 -0400)]
Reset the rails package iteration to 1
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Tue, 14 May 2019 21:30:04 +0000 (17:30 -0400)]
Merge branch '15200-fix-blobsigning-config-migration'
closes #15200
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Tue, 14 May 2019 21:16:28 +0000 (17:16 -0400)]
When specified in the api configuration,
permit_create_collection_with_unsigned_manifest: false
needs to be translated to
BlobSigning: true
refs #15200
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Tue, 14 May 2019 20:17:23 +0000 (16:17 -0400)]
15061: Add warning about clusters that are not in tokens file.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 14 May 2019 18:12:25 +0000 (14:12 -0400)]
15061: Check well-connectedness. Fix typos.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Tue, 14 May 2019 16:37:43 +0000 (12:37 -0400)]
Bump the rails package iteration to 9, for the packaging fix in commit
b4fabf39c7cb1c48a2ba09ba2f45da45b6c4574
refs #15225
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Tue, 14 May 2019 14:29:04 +0000 (11:29 -0300)]
14988: Fixes bootstrap import issue
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Tue, 14 May 2019 14:21:08 +0000 (10:21 -0400)]
Fix the api server package postinstall script to use `rake config:dump` to get a
value, rather than `rake config:check` which no longer produces output.
closes #15225
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Tue, 14 May 2019 14:15:50 +0000 (11:15 -0300)]
14988: Upgrades bootstrap-sass to deal with CVE-2019-8331.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 13 May 2019 14:41:38 +0000 (11:41 -0300)]
14988: Fixes pipeline instance controller's param handling.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Mon, 13 May 2019 14:00:47 +0000 (10:00 -0400)]
Add workbench2Url to discovery document refs #15064
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 13 May 2019 13:58:39 +0000 (09:58 -0400)]
Migrate arvbox api application.yml settings to config.yml
To set workbench2 url. refs #15064
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Mon, 13 May 2019 13:56:21 +0000 (10:56 -0300)]
14988: Fixes assert_equal param ordering for proper error messages.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 13 May 2019 12:25:01 +0000 (09:25 -0300)]
Merge branch 'master' into 14988-wb-rails5-upgrade
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Fri, 10 May 2019 20:36:39 +0000 (16:36 -0400)]
Log if client hangs up while waiting for unix volume Serialize lock.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 10 May 2019 20:07:47 +0000 (16:07 -0400)]
Remove extra \n from log.Printf formats
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 9 May 2019 20:57:08 +0000 (16:57 -0400)]
Merge branch '15061-fed-login' refs #15061
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 9 May 2019 19:25:23 +0000 (15:25 -0400)]
15061: Add documentation for using arv-federation-migrate
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 9 May 2019 14:59:56 +0000 (10:59 -0400)]
15061: Move federation migrate script into sdk
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 8 May 2019 21:25:06 +0000 (17:25 -0400)]
15061: add federation-migrate script
Produces a report, users can edit the report to choose which cluster
each user should belong to, then run the report back through to
perform the migration.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 9 May 2019 19:27:07 +0000 (15:27 -0400)]
15061: Add missing file
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 7 May 2019 22:00:57 +0000 (18:00 -0400)]
15061: Implement admin variant of user merge by uuid
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 7 May 2019 20:31:21 +0000 (16:31 -0400)]
15061: API support for linking local account to remote user
Adds page to login process to redirect user to log in to home cluster.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 6 May 2019 19:35:42 +0000 (15:35 -0400)]
15061: Correctly filter out "*" from RemoteClusters
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 9 May 2019 14:37:36 +0000 (10:37 -0400)]
Pin pykka < 2 for nodemanager no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Wed, 8 May 2019 21:50:26 +0000 (18:50 -0300)]
14988: Fixes merge conflict
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Wed, 8 May 2019 20:39:17 +0000 (16:39 -0400)]
Fix unit error in the node manager documentation for EC2.
refs #15199
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Fri, 3 May 2019 20:21:06 +0000 (16:21 -0400)]
arvbox crunch-run and certificate fixes
arvbox crunch-run change to -container-enable-networking=default
Previously was "always" which causes CWL tests that checked that
networking was disabled to fail.
arvbox root-cert creates file with .crt instead of .pem, because
that's the file extension update-ca-certificates looks for.
Add cluster id and timestamp to arvbox test certificate common name to
prevents collisions on the certificate subject.
Arvbox sets trusted api_client for workbench2.
refs #15028 refs #15061
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Wed, 8 May 2019 19:25:57 +0000 (16:25 -0300)]
Merge branch 'master' into 14988-wb-rails5-upgrade
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 8 May 2019 13:10:48 +0000 (10:10 -0300)]
14988: Fixes exception raising due to a change in rails5 behavior.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 8 May 2019 13:09:58 +0000 (10:09 -0300)]
14988: Adds empty subdir to test/ as it's required by rails.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 7 May 2019 20:26:33 +0000 (17:26 -0300)]
14988: Fixes .dup method behavior on ArvadosBase.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Tue, 7 May 2019 15:55:11 +0000 (11:55 -0400)]
Merge branch '15112-rerun-containers' refs #15112
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Tue, 7 May 2019 13:53:24 +0000 (10:53 -0300)]
14988: Fixes exception raising when logging out.
See: https://stackoverflow.com/a/
41266746
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 6 May 2019 20:56:00 +0000 (17:56 -0300)]
14988: Disables wiselinks gem. Testing if it's really needed.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 6 May 2019 20:52:20 +0000 (17:52 -0300)]
14988: Removes deprecation warning about rendering nothing.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 6 May 2019 20:12:30 +0000 (17:12 -0300)]
14988: Fixes anonymous config & token usage issues on tests.
After calling post/get it seems that the token is reset, so on tests with
multiple controller/api calls there were some problems with authentication.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 6 May 2019 18:08:25 +0000 (15:08 -0300)]
14988: Adds missing create!() method to ArvadosBase.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 6 May 2019 15:16:54 +0000 (12:16 -0300)]
14988: Fixes CSS syntax error on Jobs controller tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Mon, 6 May 2019 15:16:15 +0000 (11:16 -0400)]
15003: Merge branch 'master' into 15003-preprocess-config
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Mon, 6 May 2019 15:07:12 +0000 (12:07 -0300)]
14988: Fixes CSS syntax issue.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 6 May 2019 14:30:49 +0000 (11:30 -0300)]
14988: Fixes unit test by adding 'x-python' type to the preview-allowed list.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
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