Peter Amstutz [Thu, 25 Jul 2024 21:25:49 +0000 (17:25 -0400)]
21943: Fix bug and add integration test
The bug was caused by the fact that the path mapper de-duplicates file
references before doing the mapping, but also did not traverse
directory listings. If the list of files was de-duplicated by
selecting the entries from the directory listing (given a choice of 2+
places a given file reference appears in output), but then the
directory listings were skipped later on, those files wouldn't be
included in the path map at all.
Now trims the directory listings while constructing the list of files
to path map, so if the file is referenced in directory listings in the
output, it isn't lost to the dedup behavior.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 25 Jul 2024 18:23:14 +0000 (14:23 -0400)]
21943: Add test for files appearing multiple times in output
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Brett Smith [Wed, 24 Jul 2024 21:18:35 +0000 (17:18 -0400)]
Merge branch '21935-clean-pysdk-api'
Refs #21935.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Wed, 24 Jul 2024 18:42:40 +0000 (14:42 -0400)]
21935: Mark internal arvados.keep classes as such
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Wed, 24 Jul 2024 18:49:41 +0000 (14:49 -0400)]
21935: Rename SafeHTTPCache to ThreadSafeHTTPCache
This mirrors the name of ThreadSafeAPIClient and clarifies what it is
"safe" for.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Wed, 24 Jul 2024 18:12:36 +0000 (14:12 -0400)]
21935/15397: Remove StreamFileReader
Unused after earlier changes.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Wed, 24 Jul 2024 18:04:06 +0000 (14:04 -0400)]
21935: Add upgrade note about PySDK reorganization
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Tom Clegg [Tue, 23 Jul 2024 15:14:25 +0000 (11:14 -0400)]
Merge branch '22005-s3-etag'
fixes #22005
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Tue, 23 Jul 2024 12:06:43 +0000 (08:06 -0400)]
22005: Add Etag to s3 response header.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Mon, 22 Jul 2024 18:51:44 +0000 (14:51 -0400)]
Merge branch '21978-replace-files-docs'
closes #21978
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Peter Amstutz [Fri, 12 Jul 2024 15:41:57 +0000 (11:41 -0400)]
Provide more guidance for using arvbox the first time.
When arvbox is ready, now provides more information about things that
need to be done before you log in to arvbox workbench.
Also add a workbench banner with text and links to the Arvados docs,
based on the playground banner.
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Brett Smith [Mon, 22 Jul 2024 15:29:03 +0000 (11:29 -0400)]
21978: Streamline replace_files cross-reference markup
If we're linking to the section anyway, we can use less words and not
worry about whether it's "above" or "below."
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Tom Clegg [Mon, 22 Jul 2024 14:03:41 +0000 (10:03 -0400)]
21978: Broaden replace_files argument summary to match new features.
Also update "below" to "above" in text, to match the current location
of the replace_files section on the page.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Mon, 22 Jul 2024 14:00:19 +0000 (10:00 -0400)]
21978: Note replace_files usage restrictions re federated clusters.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Brett Smith [Fri, 19 Jul 2024 19:39:31 +0000 (15:39 -0400)]
Merge branch '21907-cache-s3-token'
Closes #21907.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 19 Jul 2024 17:23:41 +0000 (13:23 -0400)]
21907: Rename s3SecretCacheTidyInterval
For improved clarity.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 19 Jul 2024 17:23:22 +0000 (13:23 -0400)]
21907: Make new functions and methods private
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 19 Jul 2024 17:18:59 +0000 (13:18 -0400)]
21907: Use an APIClientAuthorization pointer directly
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 19 Jul 2024 17:17:35 +0000 (13:17 -0400)]
21907: Lock mutex when looking up cached S3 secrets
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Thu, 18 Jul 2024 20:32:47 +0000 (16:32 -0400)]
21907: Cache valid S3 secrets in keep-web
This improves performance by avoiding a call to
/arvados/v1/api_client_authorizations on each request.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Wed, 17 Jul 2024 14:05:49 +0000 (10:05 -0400)]
Merge branch '22001-run-tests-py3'
Closes #22001.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Wed, 17 Jul 2024 13:00:50 +0000 (09:00 -0400)]
22001: Install PySDK earlier in run-tests.sh
See comments for rationale.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 15 Jul 2024 20:16:41 +0000 (16:16 -0400)]
22001: Run arvados_version.py before `pip install`
Otherwise `pip install` may package and try to install source that
doesn't include _version.py.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 15 Jul 2024 19:12:18 +0000 (15:12 -0400)]
22001: Simplify virtualenv management in run-tests
A lot of the current virtualenv management code is parameterized,
probably to able to support virtualenvs for Python 2 and 3 in
parallel. Since we don't need that anymore, remove all this code to
simplify the script.
* initialize() calls setup_virtualenv(), which ensures the virtualenv
exists and then activates it. Everything else in the script can assume
this is done.
* install_env() installs the Python build tools and support libraries
we need.
* install_deps() installs our Python modules that are used by other
components in Arvados.
With all this, there should be no need for regular virtualenv
de/reactivation.
Various old incantations meant to work around old setuptools/pip bugs
got cleaned up as part of this too.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 15 Jul 2024 14:39:00 +0000 (10:39 -0400)]
22001: Remove :py3 suffix from tests
We haven't supported Python 2 for a while, so requiring the user to
specify just demands extra typing for no reason.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 12 Jul 2024 21:57:47 +0000 (17:57 -0400)]
21935: Fix docstring markup typo
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 12 Jul 2024 20:01:47 +0000 (16:01 -0400)]
21935: Add a docstring to arvados.commands
Mostly to annotate it @private so pdoc skips rendering it.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 12 Jul 2024 19:57:44 +0000 (15:57 -0400)]
21935: Extract BaseDirectory classes to arvados._internal.basedirs
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 12 Jul 2024 19:14:04 +0000 (15:14 -0400)]
21935: Move arvados._pycurlhelper to arvados._internal.pycurl
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 12 Jul 2024 19:02:02 +0000 (15:02 -0400)]
21935: Merge _normalize_stream and _ranges into arvados._internal.streams
All these classes and functions are related to parsing and manipulating
streams, so it makes sense to collect them in one module with a name
reflecting that.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 12 Jul 2024 18:37:12 +0000 (14:37 -0400)]
21935: Move arvados.http_to_keep under arvados._internal
This functionality could be useful to provide to people writing their
own tools. However, because of the way it was extracted out of
arvados-cwl-runner, the API wasn't really designed to be public, and has
already had one breaking change since it was introduced.
Make the current module internal so the API doesn't ossify. We can
always develop a public API for it in the future.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 12 Jul 2024 18:23:35 +0000 (14:23 -0400)]
21935: Move arvados.diskcache under arvados._internal
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 12 Jul 2024 17:21:49 +0000 (13:21 -0400)]
21935: Merge arvados.timer into arvados._internal
It's one small class. It doesn't need a dedicated module.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 12 Jul 2024 15:35:29 +0000 (11:35 -0400)]
21935: Move arvados.util._deprecated to arvados._internal
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 12 Jul 2024 15:20:17 +0000 (11:20 -0400)]
15397: Remove documentation about upgrading to Crunch v2
Now that the Crunch v1 jobs API has been removed, there is no need to
document how to transition away from it.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 12 Jul 2024 15:17:13 +0000 (11:17 -0400)]
21935/15397: Remove arv-migrate-docker19
This tool was written to aid a migration that became necessary with the
release of Docker 1.10 in February 2016. Its time has passed.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 12 Jul 2024 14:57:45 +0000 (10:57 -0400)]
21935: Rename safeapi.ThreadSafeApiCache to api.ThreadSafeAPIClient
Moving the class lets us delist the safeapi module from reference
documentation and streamline it.
Changing the class name better describes what it does (it doesn't
cache anything!) and follows PEP 8 case rules.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 12 Jul 2024 14:32:19 +0000 (10:32 -0400)]
21935: Move arvados.cache.SafeHTTPCache to arvados.api
This removes a module from the reference documentation while maintaining
backwards compatibility.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 12 Jul 2024 14:21:06 +0000 (10:21 -0400)]
21935: Correct return type of arvados.api.http_cache
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 12 Jul 2024 14:03:49 +0000 (10:03 -0400)]
21974: Remove CentOS discussion from Arvados 3.0 release notes
Redundant since this support was removed in Arvados 2.7.4.
Refs #21974.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Peter Amstutz [Mon, 8 Jul 2024 21:50:13 +0000 (17:50 -0400)]
Fix a couple of upgrade note typos.
refs #21947
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 8 Jul 2024 21:46:06 +0000 (17:46 -0400)]
Synchronize upgrade notes between 2.7 branch and main
refs #21947
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Mon, 8 Jul 2024 15:52:49 +0000 (11:52 -0400)]
Merge branch '21989-headers'
fixes #21989
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Mon, 8 Jul 2024 15:21:59 +0000 (11:21 -0400)]
21989: Fix order-sensitive test.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Zoë Ma [Mon, 8 Jul 2024 07:15:26 +0000 (15:15 +0800)]
21989: Keepstore: Use comma separator for X-Keep-Storage-Classes-Confirmed header
When generating the X-Keep-Storage-Classes-Confirmed header, use comma
(",") instead of semicolon (";") as the separator for multi-entry value.
This is to be consistent with keep-proxy's behavior and the arv-put
client's expectation. Plus, it follows RFC 9110 (see sec. 5.2).
Without the fix, arv-put wrongly believes that storage classes are not
supported on the cluster it is putting to. The spurious warning
"X-Keep-Storage-Classes header not supported by the cluster" can be seen
in arv-put messages and in Workbench2.
Arvados-DCO-1.1-Signed-off-by: Zoë Ma <zoe.ma@curii.com>
Brett Smith [Wed, 3 Jul 2024 18:43:23 +0000 (14:43 -0400)]
Merge branch '21931-public-suffix-pin'
Refs #21931.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Tom Clegg [Wed, 3 Jul 2024 13:38:08 +0000 (09:38 -0400)]
Merge branch '21701-replace-files-current-version'
refs #21701
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Brett Smith [Tue, 2 Jul 2024 17:45:08 +0000 (13:45 -0400)]
21931: Revert net-imap dependency
This was updated as part of #21933 in
9167b2053ef2a39a4e8a7c13e4127e12470b14ed.
However, net-imap 0.4 requires Ruby > 2.7.3, while Ubuntu 20.04 only
ships with Ruby 2.7.0. Upgrading this gem doesn't seem to be required
for the new Rails release, so don't.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Tue, 2 Jul 2024 16:09:40 +0000 (12:09 -0400)]
21931: Narrow public_suffix dependency for arvados-google-api-client gem
For the usual reason: to force `gem install` to resolve dependencies in
a way that works on Ruby 2.7.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Peter Amstutz [Tue, 2 Jul 2024 17:18:59 +0000 (13:18 -0400)]
Merge branch 'jszlenk/create_new_subproject' refs #21937
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Brett Smith [Mon, 1 Jul 2024 19:18:50 +0000 (15:18 -0400)]
Merge branch '21934-python36-compat'
Refs #21934.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Thu, 27 Jun 2024 19:45:11 +0000 (15:45 -0400)]
21934: Avoid using subprocess.run capture_output for Py3.6 compatibility
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Thu, 27 Jun 2024 19:10:55 +0000 (15:10 -0400)]
21934: Use older name of ssl.CertificateError
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Thu, 27 Jun 2024 19:05:45 +0000 (15:05 -0400)]
21934: Set explicit cache_max in test_disk_cache_retry_write_error
Without this, the test might fail if /tmp is small and the initially
calculated cache_max is already at the floor.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Thu, 27 Jun 2024 18:56:34 +0000 (14:56 -0400)]
21934: Use assertGreater
To improve diagnostics if the test fails.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Thu, 27 Jun 2024 18:43:45 +0000 (14:43 -0400)]
21934: Autospec mmap mocks
So attribute checks get the right result.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Stephen Smith [Mon, 1 Jul 2024 16:09:09 +0000 (12:09 -0400)]
Merge branch '21764-project-picker-crash' into main. Closes #21764
Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>
Peter Amstutz [Mon, 1 Jul 2024 15:45:34 +0000 (11:45 -0400)]
Merge branch '15814-wb2-secrets' refs #15814
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Mon, 1 Jul 2024 15:28:06 +0000 (11:28 -0400)]
21701: Reword examples, add h4 headings and IDs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Mon, 1 Jul 2024 15:26:56 +0000 (11:26 -0400)]
21701: Use <PDH> to distinguish literal strings from placeholders.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Peter Amstutz [Mon, 1 Jul 2024 14:44:50 +0000 (10:44 -0400)]
15814: Fix runtime typecheck error
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Mon, 1 Jul 2024 14:11:03 +0000 (10:11 -0400)]
21701: Update comments.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Peter Amstutz [Mon, 1 Jul 2024 14:10:28 +0000 (10:10 -0400)]
Merge branch 'main' into 15814-wb2-secrets
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Mon, 1 Jul 2024 13:57:59 +0000 (09:57 -0400)]
Merge branch '20640-computed-permissions-api'
closes #20640
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Fri, 28 Jun 2024 23:09:22 +0000 (19:09 -0400)]
20640: Merge branch 'main' into 20640-computed-permissions-api
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Fri, 28 Jun 2024 19:48:59 +0000 (15:48 -0400)]
20640: Fix obfuscated asserts.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Stephen Smith [Fri, 28 Jun 2024 15:22:30 +0000 (11:22 -0400)]
21764: Consolidate tree node extraction to be reused for tests, add TreePicker unit tests
Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>
Stephen Smith [Fri, 28 Jun 2024 15:21:01 +0000 (11:21 -0400)]
21764: Add more type safety to TreePicker
Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>
Stephen Smith [Fri, 28 Jun 2024 15:16:27 +0000 (11:16 -0400)]
21764: Add better type safety to TreePicker and handle empty string name
Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>
Stephen Smith [Wed, 19 Jun 2024 15:48:18 +0000 (11:48 -0400)]
21764: Preload cypress in wb2 build docker and start cypress as e2e by default
Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>
Peter Amstutz [Thu, 27 Jun 2024 19:18:02 +0000 (15:18 -0400)]
15814: Specifically communicate secrets cannot be displayed
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Thu, 27 Jun 2024 18:26:23 +0000 (14:26 -0400)]
21701: Reject requests with unused non-empty manifest_text.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Brett Smith [Thu, 27 Jun 2024 16:10:01 +0000 (12:10 -0400)]
Add locales and unzip to install deps
Commands from both these packages are used directly by `arvados-server install`.
No issue #.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Peter Amstutz [Thu, 27 Jun 2024 15:29:31 +0000 (11:29 -0400)]
15814: Simplify conditionals
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 27 Jun 2024 15:26:41 +0000 (11:26 -0400)]
15814: Fix tabs -> spaces
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Thu, 27 Jun 2024 14:16:38 +0000 (10:16 -0400)]
21701: Bump API revision.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Thu, 27 Jun 2024 14:02:25 +0000 (10:02 -0400)]
21701: Wordsmith.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Thu, 27 Jun 2024 13:54:57 +0000 (09:54 -0400)]
21701: Update replace_files API docs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Wed, 26 Jun 2024 21:37:53 +0000 (17:37 -0400)]
21701: Accept "manifest_text" and "current" replace_files sources.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Wed, 26 Jun 2024 21:36:53 +0000 (17:36 -0400)]
21701: Test replace_files using provided manifest_text as source.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Wed, 26 Jun 2024 20:00:33 +0000 (16:00 -0400)]
21701: Test concurrent replace_files operations.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Lucas Di Pentima [Tue, 25 Jun 2024 20:54:28 +0000 (17:54 -0300)]
Merge branch '21933-deps-upgrade'
closes #21933
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Tom Clegg [Tue, 25 Jun 2024 20:28:13 +0000 (16:28 -0400)]
Merge branch '21891-output-copying-performance'
fixes #21891
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Tue, 25 Jun 2024 20:27:25 +0000 (16:27 -0400)]
21891: Comment to explain mysterious numbers 13 and 17 in test case.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Tue, 25 Jun 2024 19:25:55 +0000 (15:25 -0400)]
20640: Update docstring to clarify usage and link to list method.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Tue, 25 Jun 2024 17:44:43 +0000 (13:44 -0400)]
20640: Make test parameterization more readable.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Lucas Di Pentima [Tue, 25 Jun 2024 20:17:48 +0000 (17:17 -0300)]
21933: Replaces gopkg.in/square/go-jose.v2 to address CVE-2024-28180
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Tue, 25 Jun 2024 19:36:17 +0000 (16:36 -0300)]
21933: Upgrades rails to 7.0.8.4 to address CVE-2024-28103
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Tue, 25 Jun 2024 19:30:02 +0000 (16:30 -0300)]
21933: Upgrades github.com/hashicorp/go-retryablehttp to address CVE-2024-6104
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Tom Clegg [Tue, 25 Jun 2024 17:44:20 +0000 (13:44 -0400)]
20640: Simplify 'select' munging.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Tue, 25 Jun 2024 17:44:00 +0000 (13:44 -0400)]
20640: Change key_fields to a Container, since order doesn't matter.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Tue, 25 Jun 2024 15:04:24 +0000 (11:04 -0400)]
20640: Fix iter_computed_permissions args not being propagated.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Tue, 25 Jun 2024 15:03:41 +0000 (11:03 -0400)]
20640: Fix secondary sort column (use tiebreak_key, not 'uuid').
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Tue, 25 Jun 2024 15:03:16 +0000 (11:03 -0400)]
20640: Add iter_computed_permissions tests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Mon, 24 Jun 2024 18:45:46 +0000 (14:45 -0400)]
Merge branch '21703-collection-update-lock'
closes #21703
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Mon, 24 Jun 2024 18:43:46 +0000 (14:43 -0400)]
21703: Improve test failure reporting.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Mon, 24 Jun 2024 18:41:41 +0000 (14:41 -0400)]
21703: Fix unlogged exception.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Mon, 24 Jun 2024 18:31:12 +0000 (14:31 -0400)]
21891: Remove unused sdk/go/manifest package and ManifestFileReader.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Peter Amstutz [Thu, 20 Jun 2024 21:05:17 +0000 (17:05 -0400)]
15814: Catch error that otherwise goes unhandled
Running into this with some tests, during teardown.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 20 Jun 2024 19:28:52 +0000 (15:28 -0400)]
15814: Fix request intercepts that assume certain field in response
During teardown, the intercept is still active but requests may return
404 from upstream, causing the intercept that modifies the reponse to fail.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
projects / arvados.git / log