Tom Clegg [Thu, 13 Aug 2015 15:56:21 +0000 (11:56 -0400)]
6781: Use env vars instead of yaml config file.
Ward Vandewege [Thu, 13 Aug 2015 14:46:57 +0000 (10:46 -0400)]
6781: Add arvados-login-sync (was update-shell-accounts.rb)
Brett Smith [Wed, 26 Aug 2015 01:29:10 +0000 (21:29 -0400)]
Merge branch '6940-workbench-centos-install-wip'
Closes #6940, #7053.
Brett Smith [Thu, 20 Aug 2015 16:59:56 +0000 (12:59 -0400)]
6940: Workbench install guide describes using Nginx with Software Collections.
Because Workbench invokes arv-get, it needs this configuration to find
arv-get in the Software Collection root.
Brett Smith [Thu, 20 Aug 2015 15:13:03 +0000 (11:13 -0400)]
6940: Move arvados-workbench-upgrade.sh down in install guide.
The script tries to restart Nginx, so Nginx should be set up first.
No issue #.
Peter Amstutz [Tue, 25 Aug 2015 17:07:41 +0000 (13:07 -0400)]
Fix up additional places in keepproxy install docs to use example
"keep$uuid_prefix.your.domain" consistently. refs #6918
Peter Amstutz [Tue, 25 Aug 2015 13:54:10 +0000 (09:54 -0400)]
Merge branch '6918-remove-nginx-cors-headers' closes #6918
Peter Amstutz [Tue, 25 Aug 2015 13:51:40 +0000 (09:51 -0400)]
6918: Further clean up recommended nginx proxy configuration.
Peter Amstutz [Mon, 24 Aug 2015 14:49:56 +0000 (10:49 -0400)]
6918: Fix server_name in example nginx config. Remove client_body_buffer_size.
Peter Amstutz [Mon, 24 Aug 2015 14:03:56 +0000 (10:03 -0400)]
Merge branch '6941-docs-fix-www-data' closes #6941
Peter Amstutz [Fri, 21 Aug 2015 20:33:14 +0000 (16:33 -0400)]
6941: Add note about needing to fill in correct web server user in places where
www-data was used before.
Brett Smith [Fri, 21 Aug 2015 19:51:37 +0000 (15:51 -0400)]
arv-tag respects more valid ARVADOS_API_HOST_INSECURE values.
This makes it more consistent with other tools, including `arv`
itself. No issue #.
Manoj [Fri, 21 Aug 2015 15:23:34 +0000 (11:23 -0400)]
closes #6640
Merge branch '6640-all-projects-dup'
Manoj [Fri, 21 Aug 2015 14:57:08 +0000 (10:57 -0400)]
Merge branch 'master' into 6640-all-projects-dup
Ward Vandewege [Fri, 21 Aug 2015 14:09:13 +0000 (10:09 -0400)]
Merge branch '6942-improve-compute-node-setup-script'
closes #6942
Ward Vandewege [Fri, 21 Aug 2015 14:08:58 +0000 (10:08 -0400)]
Merge branch 'master' into 6942-improve-compute-node-setup-script
Ward Vandewege [Fri, 21 Aug 2015 14:08:10 +0000 (10:08 -0400)]
Some more improvements based on review feedback.
closes #6942
Brett Smith [Fri, 21 Aug 2015 13:34:43 +0000 (09:34 -0400)]
arv-tag authenticates to the API server with OAuth2.
No issue #.
Peter Amstutz [Thu, 20 Aug 2015 20:07:27 +0000 (16:07 -0400)]
Merge branch '7012-no-docker-install-doc' closes #7012
Peter Amstutz [Thu, 20 Aug 2015 20:04:41 +0000 (16:04 -0400)]
6918: Update documentation to remove CORS headers from sample nginx
configuration. Add sample ssl_, proxy_ and client_ settings as well.
radhika [Thu, 20 Aug 2015 20:03:47 +0000 (16:03 -0400)]
closes #7010
Merge branch '7010-git-version'
radhika [Thu, 20 Aug 2015 20:03:21 +0000 (16:03 -0400)]
Merge branch 'master' into 7010-git-version
radhika [Thu, 20 Aug 2015 18:44:53 +0000 (14:44 -0400)]
7010: trimmed version git version note.
Peter Amstutz [Thu, 20 Aug 2015 18:36:51 +0000 (14:36 -0400)]
7012: Remove Docker install from _config.yml as well.
Peter Amstutz [Thu, 20 Aug 2015 18:34:30 +0000 (14:34 -0400)]
7012: Rewrite introduction page to remove links to Docker install and clarify
description of the manual installation method.
Ward Vandewege [Thu, 20 Aug 2015 15:34:17 +0000 (11:34 -0400)]
Improve compute node setup script.
closes #6942
radhika [Thu, 20 Aug 2015 14:47:27 +0000 (10:47 -0400)]
7010: add note in install guides that we need git version 1.7.10 or later.
Tom Clegg [Thu, 20 Aug 2015 03:59:07 +0000 (23:59 -0400)]
6640: Fix whitespace, remove excess end tag.
Tom Clegg [Thu, 20 Aug 2015 03:32:28 +0000 (23:32 -0400)]
6640: Replace paging test with all_projects bugfix test.
Tom Clegg [Wed, 19 Aug 2015 21:34:20 +0000 (17:34 -0400)]
6640: dup all_projects when reusing it for find_objects_for_index, to
avoid infecting the projects dropdown menu with this request's filter
params.
Manoj [Wed, 19 Aug 2015 16:39:50 +0000 (12:39 -0400)]
refs #6640
Merge branch '6640-projects-menu'
Manoj [Wed, 19 Aug 2015 15:52:03 +0000 (11:52 -0400)]
6640: Show only My Projects in dropdowns: use search modal for shared projects.
Bryan Cosca [Wed, 19 Aug 2015 13:35:41 +0000 (09:35 -0400)]
closes #6862
Merge branch '6862-git-doc-guide-new'
Manoj [Wed, 19 Aug 2015 13:24:23 +0000 (09:24 -0400)]
closes #6652
Merge branch '6652-test-system-menu'
Manoj [Wed, 19 Aug 2015 13:19:40 +0000 (09:19 -0400)]
6652: Added assertion and changed assertion to use assert_text instead
of page.has_text?.
Manoj [Wed, 19 Aug 2015 13:15:18 +0000 (09:15 -0400)]
Merge branch 'master' into 6652-test-system-menu
Bryan Cosca [Tue, 18 Aug 2015 20:44:53 +0000 (16:44 -0400)]
6862: Fixed typos and syntax in git-arvados-guide
Bryan Cosca [Tue, 18 Aug 2015 19:36:53 +0000 (15:36 -0400)]
6862: Moved clone arvados repository from tutorial-submit-job to git-arvados-guide, fixed some headers to include Arvados repository
Bryan Cosca [Tue, 18 Aug 2015 15:25:14 +0000 (11:25 -0400)]
6862: Added a quick guide to git, from git clone to git push.
Brett Smith [Tue, 18 Aug 2015 12:44:06 +0000 (08:44 -0400)]
6095: Brown paper bag fix the last commit.
I swear I tried to test before I pushed, but I used --no-recursive,
which meant we never got to this code. That also explains why we
didn't catch the lack of recursion earlier. Apologies. Refs #6095.
Brett Smith [Mon, 17 Aug 2015 21:34:09 +0000 (17:34 -0400)]
6095: Stop demoting OrderedDicts to dicts in arv-copy.
History: first there was
79564b0ac7d03327cc351bbd6df544ab1f776380.
This preserved the order of copied pipeline templates, but that's in
part because it stopped recursing through those templates.
1b8caff3ad598744e4a0379b01fc95ca4838caa0 fixed the recursion, but then
started losing the order again. This retains the order by ensuring we
copy OrderedDicts as OrderedDicts.
Refs #6095, #7001.
Brett Smith [Mon, 17 Aug 2015 20:50:43 +0000 (16:50 -0400)]
6998: Set force_ssl: false in Workbench Docker image.
This better matches the existing Docker image configuration, which
currently does not serve HTTPS at all. Refs #6998.
Tom Clegg [Sun, 16 Aug 2015 01:01:02 +0000 (21:01 -0400)]
Accept libcurl4-openssl-dev as an alternative to libcurl4-gnutls-dev dependency. refs #6638
Tom Clegg [Sat, 15 Aug 2015 02:25:45 +0000 (22:25 -0400)]
Use relative data_files paths so package is installable in a virtualenv. refs #6934
Unfortunately this also means /usr/pam-configs/arvados moves to
/usr/local/pam-configs/arvados, where pam-auth-update(8) does not see
it.
Tom Clegg [Fri, 14 Aug 2015 21:34:02 +0000 (17:34 -0400)]
Merge branch '6638-backport-deps' refs #6638
Brett Smith [Fri, 14 Aug 2015 19:04:27 +0000 (15:04 -0400)]
Merge branch '6950-install-guide-job-test-wip'
Closes #6950, #6960.
Brett Smith [Tue, 11 Aug 2015 21:38:21 +0000 (17:38 -0400)]
6950: Improve "make a job" check in Crunch dispatch install guide.
* This check ensures that Crunch has something to dispatch. It
doesn't test anything about the disptacher itself. Move it up, as a
prerequisite sanity check.
* Explain what success looks like.
* Explain common error causes and how to debug them.
* Better markup for the user input.
Manoj [Fri, 14 Aug 2015 18:06:40 +0000 (14:06 -0400)]
6652: Add a new repository and add a new authorized key buttons no longer
appear in the admin pages and tests have been updated.
Tom Clegg [Thu, 13 Aug 2015 14:34:12 +0000 (10:34 -0400)]
6638: 6934: Fix up shellinabox example and add to package.
Tom Clegg [Wed, 12 Aug 2015 15:52:13 +0000 (11:52 -0400)]
6638: Add package deps for llfuse and pycurl backports
radhika [Thu, 13 Aug 2015 15:13:06 +0000 (11:13 -0400)]
closes #6572
Merge branch '6572-doc-copy-pipeline'
radhika [Thu, 13 Aug 2015 15:12:32 +0000 (11:12 -0400)]
6572: minor section title updates
radhika [Thu, 13 Aug 2015 15:09:56 +0000 (11:09 -0400)]
Merge branch 'master' into 6572-doc-copy-pipeline
Tom Clegg [Wed, 12 Aug 2015 15:49:02 +0000 (11:49 -0400)]
6638: Add python sdk package dependencies.
Tom Clegg [Thu, 13 Aug 2015 03:04:35 +0000 (23:04 -0400)]
Merge branch '6934-pam' refs #6934
Tom Clegg [Thu, 13 Aug 2015 02:37:08 +0000 (22:37 -0400)]
6934: Recommend system-log-daemon metapackage, not rsyslog specifically.
Tom Clegg [Wed, 12 Aug 2015 20:41:38 +0000 (16:41 -0400)]
6934: Move integration tests into separate dir.
Now, "python setup.py --test-suite integration_tests" will run
integration tests, and "python setup.py" won't -- regardless of
whether you are root, and what your pam config looks like.
Tom Clegg [Wed, 12 Aug 2015 19:59:37 +0000 (15:59 -0400)]
6934: Fix Dockerfile instructions. Use default test port. Use arvados/foo tag convention.
Tom Clegg [Wed, 12 Aug 2015 17:55:56 +0000 (13:55 -0400)]
Merge branch '5824-go-sdk' refs #5824
Tom Clegg [Wed, 12 Aug 2015 17:45:43 +0000 (13:45 -0400)]
5824: Merge branch 'master' into 5824-go-sdk
Tom Clegg [Tue, 11 Aug 2015 14:46:28 +0000 (10:46 -0400)]
6934: Add pam_sm tests.
Tom Clegg [Tue, 11 Aug 2015 14:32:49 +0000 (10:32 -0400)]
6934: Split module
Tom Clegg [Tue, 11 Aug 2015 06:26:51 +0000 (02:26 -0400)]
6934: Put wrapper in /lib/security/ instead of writing dist-packages path in config file. Make integration test work.
Tom Clegg [Mon, 10 Aug 2015 14:42:17 +0000 (10:42 -0400)]
6934: Add packaging instructions
radhika [Wed, 12 Aug 2015 15:05:14 +0000 (11:05 -0400)]
Merge branch 'master' into 6572-doc-copy-pipeline
Tom Clegg [Tue, 11 Aug 2015 21:27:07 +0000 (17:27 -0400)]
5824: Test invalid argument vs. 404.
Brett Smith [Tue, 11 Aug 2015 19:59:53 +0000 (15:59 -0400)]
6938: Install guide covers git server before standard objects.
The standard objects page covers creating the arvados git repository,
which requires Git hosting to be set up already. It also feels like
this flows a little nicer because currently the Git server must be on
the same host as the API server.
Closes #6938.
Tom Clegg [Tue, 11 Aug 2015 19:38:40 +0000 (15:38 -0400)]
5824: Add tests for UUIDMatch and PDHMatch.
Tom Clegg [Tue, 11 Aug 2015 19:37:50 +0000 (15:37 -0400)]
5824: Return InvalidArgument (not 404) for poor argument choices that do not involve real HTTP failures.
Tom Clegg [Tue, 11 Aug 2015 17:51:09 +0000 (13:51 -0400)]
Merge branch '6260-work-queue-status' refs #6260
radhika [Tue, 11 Aug 2015 16:13:36 +0000 (12:13 -0400)]
6572: update to make it clear that the user can access anonymous token to use arv-copy.
Tom Clegg [Tue, 11 Aug 2015 15:13:34 +0000 (11:13 -0400)]
6260: Add explanatory comment about testing /status.json.
Tom Clegg [Tue, 11 Aug 2015 15:07:28 +0000 (11:07 -0400)]
6260: Rename ReportDone to DoneItem.
Tom Clegg [Tue, 11 Aug 2015 15:07:13 +0000 (11:07 -0400)]
6260: Improve Gate explanation.
radhika [Tue, 11 Aug 2015 14:47:02 +0000 (10:47 -0400)]
Merge branch 'master' into 6572-doc-copy-pipeline
Tom Clegg [Tue, 11 Aug 2015 00:45:38 +0000 (20:45 -0400)]
5824: Add test for nonexistent resource type.
Tom Clegg [Tue, 11 Aug 2015 00:39:39 +0000 (20:39 -0400)]
5824: Document ClientPool.
Tom Clegg [Tue, 11 Aug 2015 00:39:25 +0000 (20:39 -0400)]
5824: Doc/comment fixes, add test for "Get empty UUID"
Tom Clegg [Mon, 10 Aug 2015 23:51:27 +0000 (19:51 -0400)]
5824: Fix up comments for godoc.
Tom Clegg [Mon, 3 Aug 2015 04:39:28 +0000 (00:39 -0400)]
5824: Add UUID and PDH matchers.
Tom Clegg [Mon, 3 Aug 2015 04:38:36 +0000 (00:38 -0400)]
5824: Do not JSON-encode string params. Fixup comments for godoc.
Tom Clegg [Mon, 3 Aug 2015 04:36:46 +0000 (00:36 -0400)]
5824: Use fmt "%+q" instead of custom escaping.
Tom Clegg [Thu, 23 Jul 2015 04:01:52 +0000 (00:01 -0400)]
5824: Add Get() method to arvadosclient.
Tom Clegg [Wed, 17 Jun 2015 04:47:12 +0000 (00:47 -0400)]
Shut down API server after suite (noticed during 5824, otherwise no issue #)
Tom Clegg [Fri, 12 Jun 2015 06:43:19 +0000 (02:43 -0400)]
5824: Move client pool to SDK.
Tom Clegg [Fri, 12 Jun 2015 05:53:05 +0000 (01:53 -0400)]
5824: Move quoted-logging function to SDK.
Tom Clegg [Wed, 17 Jun 2015 05:57:33 +0000 (01:57 -0400)]
5824: gofmt
Tom Clegg [Fri, 12 Jun 2015 05:39:27 +0000 (01:39 -0400)]
5824: Move spying ResponseWriter to SDK.
Tom Clegg [Fri, 12 Jun 2015 05:01:52 +0000 (01:01 -0400)]
5824: Move HTTP server code to SDK.
Tom Clegg [Thu, 21 May 2015 04:33:56 +0000 (00:33 -0400)]
5824: Move request auth code into an SDK package. Support more ways of passing tokens.
Bryan Cosca [Mon, 10 Aug 2015 20:11:13 +0000 (16:11 -0400)]
closes #6858
Merge branch '6858-job-re-run-documentation'
radhika [Mon, 10 Aug 2015 18:35:16 +0000 (14:35 -0400)]
refs #6827
Merge branch '6827-short-token'
Brett Smith [Mon, 10 Aug 2015 18:23:09 +0000 (14:23 -0400)]
Improve crunch-dispatch runit script in install guide.
* Modernize crunch-dispatch's prerequisites.
* Document what this script is.
* Consolidate environment variables for easier configuration.
No issue #.
Brett Smith [Mon, 10 Aug 2015 18:17:59 +0000 (14:17 -0400)]
Include example service script for keepproxy.
Conveniently you just need this one line, which should work equally
well in all kinds of supervisors. No issue #.
radhika [Mon, 10 Aug 2015 18:32:50 +0000 (14:32 -0400)]
6827: fix error in setting valid token.
radhika [Mon, 10 Aug 2015 18:20:25 +0000 (14:20 -0400)]
6827: set validApiToken flag after ensuring that getting list of repositories work with the given credentials.
radhika [Mon, 10 Aug 2015 18:19:07 +0000 (14:19 -0400)]
Merge branch 'master' into 6827-short-token
Tom Clegg [Mon, 10 Aug 2015 17:07:58 +0000 (13:07 -0400)]
6827: Test logging handler with short token.
Tom Clegg [Mon, 10 Aug 2015 16:45:45 +0000 (12:45 -0400)]
6260: Pull entire status object out of WorkQueue atomically.
Tom Clegg [Mon, 10 Aug 2015 15:56:48 +0000 (11:56 -0400)]
6260: Expose queue sizes in /status.json. Fix sleep/race in trash_worker_test.
projects / arvados.git / log