arvados.git
3 years ago17962: Add line about printing to stdout on description
Peter Amstutz [Wed, 17 Nov 2021 22:00:59 +0000 (17:00 -0500)]
17962: Add line about printing to stdout on description

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17962: Add test that uuid of project is printed on stdout
Peter Amstutz [Wed, 17 Nov 2021 21:58:59 +0000 (16:58 -0500)]
17962: Add test that uuid of project is printed on stdout

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17962: Improve error handling when copying projects and workflows
Peter Amstutz [Wed, 17 Nov 2021 21:19:14 +0000 (16:19 -0500)]
17962: Improve error handling when copying projects and workflows

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoMerge branch '18363-managed-properties-doc-improvement' into main.
Lucas Di Pentima [Wed, 17 Nov 2021 18:28:37 +0000 (15:28 -0300)]
Merge branch '18363-managed-properties-doc-improvement' into main.
Closes #18363

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago18363: Fixes typo.
Lucas Di Pentima [Wed, 17 Nov 2021 18:26:49 +0000 (15:26 -0300)]
18363: Fixes typo.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years agoMerge branch '18285-cwl-hint-warning' refs #18285
Peter Amstutz [Wed, 17 Nov 2021 17:55:16 +0000 (12:55 -0500)]
Merge branch '18285-cwl-hint-warning' refs #18285

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoMerge branch '18336-httplib2-pysdk-issues' into main. Closes #18336
Lucas Di Pentima [Wed, 17 Nov 2021 15:16:54 +0000 (12:16 -0300)]
Merge branch '18336-httplib2-pysdk-issues' into main. Closes #18336

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years agoMerge branch '18340-delete-role-filter-groups' into main. Closes #18340.
Lucas Di Pentima [Wed, 17 Nov 2021 15:03:42 +0000 (12:03 -0300)]
Merge branch '18340-delete-role-filter-groups' into main. Closes #18340.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago18285: Bump cwltool and schema-salad dependencies
Peter Amstutz [Wed, 17 Nov 2021 14:53:52 +0000 (09:53 -0500)]
18285: Bump cwltool and schema-salad dependencies

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago18336: Pins upper version limit for httplib2 dependency on PySDK.
Lucas Di Pentima [Wed, 17 Nov 2021 14:50:24 +0000 (11:50 -0300)]
18336: Pins upper version limit for httplib2 dependency on PySDK.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago18340: Only trash project groups on delete calls.
Lucas Di Pentima [Wed, 17 Nov 2021 11:28:36 +0000 (08:28 -0300)]
18340: Only trash project groups on delete calls.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago18340: Adds test for role & filter group deletion.
Lucas Di Pentima [Tue, 16 Nov 2021 22:24:16 +0000 (19:24 -0300)]
18340: Adds test for role & filter group deletion.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years agoMerge branch 'kinow/contributing'
Peter Amstutz [Tue, 16 Nov 2021 21:56:16 +0000 (16:56 -0500)]
Merge branch 'kinow/contributing'

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoUpdate CONTRIBUTING.md
Bruno P. Kinoshita [Mon, 15 Nov 2021 22:04:03 +0000 (11:04 +1300)]
Update CONTRIBUTING.md

Arvados-DCO-1.1-Signed-off-by: Bruno P. Kinoshita <brunodepaulak@yahoo.com.br>

3 years agoMerge branch '18376-nfs-readdirent'
Tom Clegg [Tue, 16 Nov 2021 21:34:45 +0000 (16:34 -0500)]
Merge branch '18376-nfs-readdirent'

fixes #18376

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago18376: Complete series of readdirent calls as quickly as possible.
Tom Clegg [Tue, 16 Nov 2021 19:38:29 +0000 (14:38 -0500)]
18376: Complete series of readdirent calls as quickly as possible.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years agoMerge branch '17635-pysdk-collection-preserve-version' into main. Closes #17635
Lucas Di Pentima [Tue, 16 Nov 2021 18:48:47 +0000 (15:48 -0300)]
Merge branch '17635-pysdk-collection-preserve-version' into main. Closes #17635

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17635: Further improves documentation on the arvados.Collection class.
Lucas Di Pentima [Tue, 16 Nov 2021 18:46:52 +0000 (15:46 -0300)]
17635: Further improves documentation on the arvados.Collection class.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago18363: Adds missing use case for protected property.
Lucas Di Pentima [Tue, 16 Nov 2021 17:22:56 +0000 (14:22 -0300)]
18363: Adds missing use case for protected property.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17635: Improving documentation on preserve_version field.
Lucas Di Pentima [Tue, 16 Nov 2021 16:17:52 +0000 (13:17 -0300)]
17635: Improving documentation on preserve_version field.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years agoMerge branch '18215-select-param-update-create' into main. Refs #18215
Lucas Di Pentima [Mon, 15 Nov 2021 18:12:19 +0000 (15:12 -0300)]
Merge branch '18215-select-param-update-create' into main. Refs #18215

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago18215: Adds tests for Create & Update calls.
Lucas Di Pentima [Mon, 15 Nov 2021 18:11:30 +0000 (15:11 -0300)]
18215: Adds tests for Create & Update calls.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years agoMerge branch '18316-fuse-read-only' refs #18316
Peter Amstutz [Mon, 15 Nov 2021 17:50:54 +0000 (12:50 -0500)]
Merge branch '18316-fuse-read-only' refs #18316

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago18316: Add test & record enable_write on FuseArvadosFile
Peter Amstutz [Fri, 12 Nov 2021 22:21:52 +0000 (17:21 -0500)]
18316: Add test & record enable_write on FuseArvadosFile

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago18316: Propagate value of enable_write & don't try to save on flush
Peter Amstutz [Fri, 12 Nov 2021 21:26:15 +0000 (16:26 -0500)]
18316: Propagate value of enable_write & don't try to save on flush

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago18215: Only respond with selected fields on create & update calls.
Lucas Di Pentima [Fri, 12 Nov 2021 19:17:14 +0000 (16:17 -0300)]
18215: Only respond with selected fields on create & update calls.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years agoMerge branch '18346-crunchrun-no-events' refs #18346
Peter Amstutz [Fri, 12 Nov 2021 14:38:05 +0000 (09:38 -0500)]
Merge branch '18346-crunchrun-no-events' refs #18346

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago18346: Only disable websockets when all container mounts are by PDH
Peter Amstutz [Thu, 11 Nov 2021 22:32:01 +0000 (17:32 -0500)]
18346: Only disable websockets when all container mounts are by PDH

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago18346: Fix tests
Peter Amstutz [Thu, 11 Nov 2021 21:13:44 +0000 (16:13 -0500)]
18346: Fix tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago18346: Add arv-mount --disable-event-listening
Peter Amstutz [Thu, 11 Nov 2021 21:10:54 +0000 (16:10 -0500)]
18346: Add arv-mount --disable-event-listening

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoMerge branch '16817-users-visible-upon-activation'
Tom Clegg [Thu, 11 Nov 2021 20:47:05 +0000 (15:47 -0500)]
Merge branch '16817-users-visible-upon-activation'

closes #16817

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17635: Adds support for versioning to Collection.save() and save_new()
Lucas Di Pentima [Thu, 11 Nov 2021 20:24:09 +0000 (17:24 -0300)]
17635: Adds support for versioning to Collection.save() and save_new()

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago16817: Merge branch 'main'
Tom Clegg [Thu, 11 Nov 2021 19:54:03 +0000 (14:54 -0500)]
16817: Merge branch 'main'

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years agoMerge branch '17944-backend-vocabulary-validation-rebased' into main.
Lucas Di Pentima [Thu, 11 Nov 2021 17:51:31 +0000 (14:51 -0300)]
Merge branch '17944-backend-vocabulary-validation-rebased' into main.

Refs #17944

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17944: Removes link to old doc version, so that tests pass.
Lucas Di Pentima [Thu, 11 Nov 2021 17:39:51 +0000 (14:39 -0300)]
17944: Removes link to old doc version, so that tests pass.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17944: Undo changes on tests.
Lucas Di Pentima [Thu, 11 Nov 2021 17:04:45 +0000 (14:04 -0300)]
17944: Undo changes on tests.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17944: Adds upgrade notes.
Lucas Di Pentima [Wed, 10 Nov 2021 20:48:50 +0000 (17:48 -0300)]
17944: Adds upgrade notes.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years agoMerge branch '18346-container-token'
Tom Clegg [Wed, 10 Nov 2021 20:11:57 +0000 (15:11 -0500)]
Merge branch '18346-container-token'

refs #18346

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17944: Only check for value aliases collision between different values.
Lucas Di Pentima [Wed, 10 Nov 2021 19:31:12 +0000 (16:31 -0300)]
17944: Only check for value aliases collision between different values.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17944: Improves error reporting on invalid value types.
Lucas Di Pentima [Wed, 10 Nov 2021 18:21:17 +0000 (15:21 -0300)]
17944: Improves error reporting on invalid value types.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago18346: Do not forward locally-issued token to own login cluster.
Tom Clegg [Wed, 10 Nov 2021 16:13:09 +0000 (11:13 -0500)]
18346: Do not forward locally-issued token to own login cluster.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17944: Fixes tests.
Lucas Di Pentima [Tue, 9 Nov 2021 22:35:18 +0000 (19:35 -0300)]
17944: Fixes tests.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17944: Fixes logging on vocabulary reload.
Lucas Di Pentima [Tue, 9 Nov 2021 21:59:23 +0000 (18:59 -0300)]
17944: Fixes logging on vocabulary reload.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17944: Adds a case-insensitive check for key/value against labels.
Lucas Di Pentima [Tue, 9 Nov 2021 21:45:31 +0000 (18:45 -0300)]
17944: Adds a case-insensitive check for key/value against labels.

Also, improves tests.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17944: Improves keys & value collision validation against aliases. Adds tests.
Lucas Di Pentima [Tue, 9 Nov 2021 21:01:12 +0000 (18:01 -0300)]
17944: Improves keys & value collision validation against aliases. Adds tests.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17944: Fixes test. Avoids unnecessary Validate() call.
Lucas Di Pentima [Tue, 9 Nov 2021 19:36:51 +0000 (16:36 -0300)]
17944: Fixes test. Avoids unnecessary Validate() call.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17944: Improves error messages.
Lucas Di Pentima [Tue, 9 Nov 2021 19:10:01 +0000 (16:10 -0300)]
17944: Improves error messages.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17944: Fixes premature vocabulary check success.
Lucas Di Pentima [Tue, 9 Nov 2021 18:24:47 +0000 (15:24 -0300)]
17944: Fixes premature vocabulary check success.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17944: Fixes tests. Improves health funcs handling.
Lucas Di Pentima [Fri, 5 Nov 2021 19:54:44 +0000 (16:54 -0300)]
17944: Fixes tests. Improves health funcs handling.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17944: Adds /_health/vocabulary health endpoint. Improves cache refreshing.
Lucas Di Pentima [Fri, 5 Nov 2021 19:07:37 +0000 (16:07 -0300)]
17944: Adds /_health/vocabulary health endpoint. Improves cache refreshing.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years agoRemve last reference to terraform for now.
Ward Vandewege [Thu, 4 Nov 2021 20:06:03 +0000 (16:06 -0400)]
Remve last reference to terraform for now.

refs #17450

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoRemove reference to terraform code that was never checked in.
Ward Vandewege [Thu, 4 Nov 2021 19:59:26 +0000 (15:59 -0400)]
Remove reference to terraform code that was never checked in.

refs #17450

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoMake the linkchecker more strict so it objects to relative links within
Ward Vandewege [Thu, 4 Nov 2021 19:55:17 +0000 (15:55 -0400)]
Make the linkchecker more strict so it objects to relative links within
our doc tree that do not have the {{ site.baseurl }} prefix.

Fix all the links that were incorrect that way.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoFix failing "apt-get update" in test.
Tom Clegg [Thu, 4 Nov 2021 17:27:38 +0000 (13:27 -0400)]
Fix failing "apt-get update" in test.

refs #18334

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17944: Adds vocabulary checking support to links.
Lucas Di Pentima [Wed, 3 Nov 2021 15:55:44 +0000 (12:55 -0300)]
17944: Adds vocabulary checking support to links.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years agoMerge branch '12859-keepstore-fd-leak'
Tom Clegg [Wed, 3 Nov 2021 20:33:19 +0000 (16:33 -0400)]
Merge branch '12859-keepstore-fd-leak'

fixes #12859

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17944: Makes returning an empty Vocabulary also include an empty "tags".
Lucas Di Pentima [Tue, 2 Nov 2021 20:03:49 +0000 (17:03 -0300)]
17944: Makes returning an empty Vocabulary also include an empty "tags".

...instead of returning "tags":null which makes workbench2's code to fail.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17944: Forces vocabulary checking at startup time.
Lucas Di Pentima [Mon, 1 Nov 2021 20:12:14 +0000 (17:12 -0300)]
17944: Forces vocabulary checking at startup time.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17944: Vocabulary check errors return status 400 instead of 500.
Lucas Di Pentima [Mon, 1 Nov 2021 19:02:20 +0000 (16:02 -0300)]
17944: Vocabulary check errors return status 400 instead of 500.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17944: Vocabulary loading, monitoring and checking on several object types.
Lucas Di Pentima [Mon, 25 Oct 2021 16:05:31 +0000 (13:05 -0300)]
17944: Vocabulary loading, monitoring and checking on several object types.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago17944: Updates config knobs and documentation.
Lucas Di Pentima [Thu, 21 Oct 2021 18:16:14 +0000 (15:16 -0300)]
17944: Updates config knobs and documentation.

Workbench.VocabularyURL will be auto-exported providing the new vocabulary
endpoint, for backwards compatibility.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years agoMerge branch '18313-arvbox-bootstrap-go-version'
Ward Vandewege [Tue, 2 Nov 2021 16:53:31 +0000 (12:53 -0400)]
Merge branch '18313-arvbox-bootstrap-go-version'

closes #18313

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago18313: Merge branch 'main' into 18313-arvbox-bootstrap-go-version
Ward Vandewege [Tue, 2 Nov 2021 16:53:02 +0000 (12:53 -0400)]
18313: Merge branch 'main' into 18313-arvbox-bootstrap-go-version

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago18313: remove leftover grep from Dockerfile.base
Ward Vandewege [Tue, 2 Nov 2021 14:04:02 +0000 (10:04 -0400)]
18313: remove leftover grep from Dockerfile.base

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoMerge branch '18318-nokogiri-updates' into main. Closes #18318
Lucas Di Pentima [Tue, 2 Nov 2021 13:54:40 +0000 (10:54 -0300)]
Merge branch '18318-nokogiri-updates' into main. Closes #18318

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago18318: Updates the nokogiri dependency on API & WB1.
Lucas Di Pentima [Tue, 2 Nov 2021 13:04:48 +0000 (10:04 -0300)]
18318: Updates the nokogiri dependency on API & WB1.

Addresses https://nvd.nist.gov/vuln/detail/CVE-2021-41098

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 years ago18313: add a test for the grep/awk command used in the arvbox code.
Ward Vandewege [Mon, 1 Nov 2021 21:56:50 +0000 (17:56 -0400)]
18313: add a test for the grep/awk command used in the arvbox code.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago12859: Fix unclosed file descriptors in local filesystem driver.
Tom Clegg [Mon, 1 Nov 2021 18:49:29 +0000 (14:49 -0400)]
12859: Fix unclosed file descriptors in local filesystem driver.

Temporary file was not being closed/removed in the case where client
disconnection is detected while waiting for the volume-level serialize
lock.

Also, GetDeviceID was leaking one file descriptor per volume at
startup time.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years agoTweak docker image tagging
Peter Amstutz [Thu, 9 Sep 2021 14:16:49 +0000 (10:16 -0400)]
Tweak docker image tagging

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago18313: make the arvbox build scripts look up the Go compiler version to
Ward Vandewege [Fri, 29 Oct 2021 17:47:00 +0000 (13:47 -0400)]
18313: make the arvbox build scripts look up the Go compiler version to
       use for bootstrapping by pulling it from lib/install/deps.go

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoMerge branch '18309-faraday-dependency'
Ward Vandewege [Fri, 29 Oct 2021 17:22:43 +0000 (13:22 -0400)]
Merge branch '18309-faraday-dependency'

closes #18309

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago18309: remove faraday dependency in the arvados-login-sync gem, instead
Ward Vandewege [Fri, 29 Oct 2021 15:29:34 +0000 (11:29 -0400)]
18309: remove faraday dependency in the arvados-login-sync gem, instead
       depend on the correct version of the arvados-google-api-client
       gem.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoMerge branch '18273-java-timeout' refs #18273
Peter Amstutz [Fri, 29 Oct 2021 15:17:36 +0000 (11:17 -0400)]
Merge branch '18273-java-timeout' refs #18273

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago18273: Tweak java sdk example
Peter Amstutz [Fri, 29 Oct 2021 14:54:19 +0000 (10:54 -0400)]
18273: Tweak java sdk example

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago16817: Add Users.ActivatedUsersAreVisibleToOthers config.
Tom Clegg [Fri, 29 Oct 2021 14:08:48 +0000 (10:08 -0400)]
16817: Add Users.ActivatedUsersAreVisibleToOthers config.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years agoWe now rely on Go 1.16. Unbreak the arvbox build toolchain by switching
Ward Vandewege [Fri, 29 Oct 2021 13:29:29 +0000 (09:29 -0400)]
We now rely on Go 1.16. Unbreak the arvbox build toolchain by switching
to upstream Golang, the buster-backports version is too old.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoController test fix.
Ward Vandewege [Thu, 28 Oct 2021 23:47:05 +0000 (19:47 -0400)]
Controller test fix.

refs #18183

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago18273: simplify and use version-at-commit.sh
Peter Amstutz [Thu, 28 Oct 2021 18:57:04 +0000 (14:57 -0400)]
18273: simplify and use version-at-commit.sh

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago18273: Set docker gradle version
Peter Amstutz [Thu, 28 Oct 2021 18:37:28 +0000 (14:37 -0400)]
18273: Set docker gradle version

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoAnother rails test fix.
Ward Vandewege [Thu, 28 Oct 2021 18:10:40 +0000 (14:10 -0400)]
Another rails test fix.

refs #18183

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoMerge branch '18264-cwl-test-running-improvements'
Ward Vandewege [Thu, 28 Oct 2021 17:40:31 +0000 (13:40 -0400)]
Merge branch '18264-cwl-test-running-improvements'

refs #18264

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago18264: Merge branch 'main' into 18264-cwl-test-running-improvements
Ward Vandewege [Thu, 28 Oct 2021 17:40:12 +0000 (13:40 -0400)]
18264: Merge branch 'main' into 18264-cwl-test-running-improvements

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoUpdate the test db structure.
Ward Vandewege [Thu, 28 Oct 2021 16:48:02 +0000 (12:48 -0400)]
Update the test db structure.

refs #18183

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago18273: Increase default java sdk timeouts & make them configuable
Peter Amstutz [Thu, 14 Oct 2021 19:09:00 +0000 (15:09 -0400)]
18273: Increase default java sdk timeouts & make them configuable

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agoFix up "upgrading to {earlier version}" links.
Tom Clegg [Thu, 28 Oct 2021 14:28:44 +0000 (10:28 -0400)]
Fix up "upgrading to {earlier version}" links.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years agoMerge branch '16347-container-local-keepstore'
Tom Clegg [Thu, 28 Oct 2021 14:14:09 +0000 (10:14 -0400)]
Merge branch '16347-container-local-keepstore'

closes #16347

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago16347: Clarify upgrade note.
Tom Clegg [Thu, 28 Oct 2021 13:58:36 +0000 (09:58 -0400)]
16347: Clarify upgrade note.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years agoMerge branch '18183-revoke-tokens-when-user-is-disabled'
Ward Vandewege [Wed, 27 Oct 2021 21:33:37 +0000 (17:33 -0400)]
Merge branch '18183-revoke-tokens-when-user-is-disabled'

closes #18183

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago18183: Merge branch 'main' into 18183-revoke-tokens-when-user-is-disabled
Ward Vandewege [Wed, 27 Oct 2021 21:32:57 +0000 (17:32 -0400)]
18183: Merge branch 'main' into 18183-revoke-tokens-when-user-is-disabled

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoFix top of upgrade notes to 2.3.0
Peter Amstutz [Wed, 27 Oct 2021 18:37:47 +0000 (14:37 -0400)]
Fix top of upgrade notes to 2.3.0

refs #18130

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago18183: add a database migration that deletes tokens and ssh keys that
Ward Vandewege [Wed, 27 Oct 2021 19:48:54 +0000 (15:48 -0400)]
18183: add a database migration that deletes tokens and ssh keys that
       belong to inactive users.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago18183: When the user unsetup api endpoint is hit, any tokens owned by
Ward Vandewege [Wed, 27 Oct 2021 19:05:00 +0000 (15:05 -0400)]
18183: When the user unsetup api endpoint is hit, any tokens owned by
       the user should be deleted.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago16347: Fix race in test helper func.
Tom Clegg [Wed, 27 Oct 2021 19:33:09 +0000 (15:33 -0400)]
16347: Fix race in test helper func.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago16347: Add upgrade note.
Tom Clegg [Wed, 27 Oct 2021 18:34:47 +0000 (14:34 -0400)]
16347: Add upgrade note.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago16347: Merge branch 'main'
Tom Clegg [Wed, 27 Oct 2021 18:12:56 +0000 (14:12 -0400)]
16347: Merge branch 'main'

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago18264: add a script that uses the existing version logic in the build
Ward Vandewege [Tue, 26 Oct 2021 18:52:32 +0000 (14:52 -0400)]
18264: add a script that uses the existing version logic in the build
       scripts to generate a package version string from a local Arvados
       git checkout.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoSince CWL defaults to 256M of ram, make that the suggested amount for
Ward Vandewege [Tue, 26 Oct 2021 18:28:23 +0000 (14:28 -0400)]
Since CWL defaults to 256M of ram, make that the suggested amount for
the `mksquashfs mem` setting in singularity.conf.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoMerge branch '18290-lsf-bsub-args-template'
Ward Vandewege [Mon, 25 Oct 2021 15:28:09 +0000 (11:28 -0400)]
Merge branch '18290-lsf-bsub-args-template'

closes #18290

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago18290: Merge branch 'main' into 18290-lsf-bsub-args-template
Ward Vandewege [Mon, 25 Oct 2021 15:27:37 +0000 (11:27 -0400)]
18290: Merge branch 'main' into 18290-lsf-bsub-args-template

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago18290: address review comments.
Ward Vandewege [Mon, 25 Oct 2021 14:15:21 +0000 (10:15 -0400)]
18290: address review comments.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>