Peter Amstutz [Wed, 5 Sep 2018 18:47:19 +0000 (14:47 -0400)]
Merge branch 'wtsi/14110-c-d-s-limit-slurm-concurrency' refs #14110
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 4 Sep 2018 19:45:45 +0000 (15:45 -0400)]
Merge branch '14152-s3-v4-signature'
refs #14152
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 4 Sep 2018 19:37:57 +0000 (15:37 -0400)]
Merge branch '14008-containers-index'
refs #14008
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 4 Sep 2018 15:25:51 +0000 (11:25 -0400)]
Add test case for filtering on is_trashed in groups#contents.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 4 Sep 2018 15:25:18 +0000 (11:25 -0400)]
Remove redundant test case.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 4 Sep 2018 19:03:58 +0000 (15:03 -0400)]
14008: Merge branch 'master' into 14008-containers-index
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 4 Sep 2018 18:00:04 +0000 (14:00 -0400)]
14152: Use V4 signer for S3 in regions that use V4 for EC2.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 4 Sep 2018 15:36:15 +0000 (11:36 -0400)]
Merge branch '14009-container-reuse-index'
refs #14009
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Ward Vandewege [Tue, 4 Sep 2018 02:21:14 +0000 (22:21 -0400)]
14153: Merge branch '14153-support-ruby-2.3.7'
closes #14153
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Mon, 3 Sep 2018 19:53:27 +0000 (15:53 -0400)]
Change dependency from google-api-client to cure-google-api-client so
that we can use ruby 2.3.7
refs #14153
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Tue, 4 Sep 2018 02:15:56 +0000 (22:15 -0400)]
Make sure to bump the dependency on the arvados gems to the 1.2 series.
refs #14032
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Mon, 3 Sep 2018 18:37:44 +0000 (14:37 -0400)]
Documentation fix: make the use of $uuid_prefix consistent.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Sat, 25 Aug 2018 14:53:32 +0000 (10:53 -0400)]
Revert ruamel.yaml build to 0.14.12 refs #14075
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Sat, 25 Aug 2018 13:19:15 +0000 (09:19 -0400)]
Fix test for changed expectation refs #13973
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Sat, 25 Aug 2018 00:37:41 +0000 (20:37 -0400)]
'trollop' gem renamed to 'optimist' fix build no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 24 Aug 2018 21:27:35 +0000 (17:27 -0400)]
Build ruamel.yaml 0.15.26 for a-c-r
This is last version before a serious regression was introduced in
parsing flow mapping
https://bitbucket.org/ruamel/yaml/issues/227/regression-parsing-flow-mapping
This affects 0.15.27 to 0.15.51
0.15.52 haven't been tested because they have a different
compatibility problem:
https://github.com/common-workflow-language/schema_salad/pull/195
refs #14075
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 24 Aug 2018 19:45:08 +0000 (15:45 -0400)]
Merge branch '13456-controller-timeout'
refs #13456
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 23 Aug 2018 18:32:03 +0000 (14:32 -0400)]
13456: Use HTTPRequestTimeout in test suite.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 24 Aug 2018 19:33:56 +0000 (15:33 -0400)]
Merge branch '13973-child-priority' refs #13973
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 24 Aug 2018 19:33:05 +0000 (15:33 -0400)]
Merge branch '14075-uploadfiles' refs #14075
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 24 Aug 2018 19:28:16 +0000 (15:28 -0400)]
Merge branch 'master' into 14075-uploadfiles
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 24 Aug 2018 17:51:56 +0000 (13:51 -0400)]
14075: Tweak ruamel.yaml verision range in setup.py
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 24 Aug 2018 16:12:47 +0000 (12:12 -0400)]
14075: Fix cwl unit tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Joshua C. Randall [Mon, 20 Aug 2018 16:31:29 +0000 (17:31 +0100)]
fix slow queries in uploadfiles
change uploadfiles to include pdh in name of collection rather then using ensure_unique_names=True
also don't bother listing existing empty collections
Arvados-DCO-1.1-Signed-off-by: Joshua C. Randall <jcrandall@alum.mit.edu>
Tom Clegg [Fri, 24 Aug 2018 16:06:56 +0000 (12:06 -0400)]
Merge branch '13959-timeouts-and-logging'
fixes #13959
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 24 Aug 2018 16:06:18 +0000 (12:06 -0400)]
13959: Merge branch 'master' into 13959-timeouts-and-logging
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 24 Aug 2018 16:01:50 +0000 (12:01 -0400)]
14008: Merge branch 'master' into 14008-containers-index
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 24 Aug 2018 15:57:07 +0000 (11:57 -0400)]
14008: Add container queue index.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 24 Aug 2018 15:36:10 +0000 (11:36 -0400)]
14009: Index containers table for reuse searches.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 24 Aug 2018 14:13:44 +0000 (10:13 -0400)]
13973: Tweak test for inheriting CR priority
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Fri, 24 Aug 2018 05:50:41 +0000 (01:50 -0400)]
We need to build ws 0.4.2 for ubuntu1404 and ubuntu1604
refs #13823
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 24 Aug 2018 05:49:40 +0000 (01:49 -0400)]
Switch to use ha.pool.sks-keyservers.net everywhere, which is more reliable
than pool.sks-keyservers.net
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Thu, 23 Aug 2018 21:39:56 +0000 (17:39 -0400)]
Improvement for run-tests.sh: support multiple occurrences of the
--only argument - syntax fix.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Thu, 23 Aug 2018 21:27:18 +0000 (17:27 -0400)]
Bugfix for run-tests.sh: run sdk/R install if docs are being built,
they rely on it.
Improvement for run-tests.sh: support multiple occurrences of the
--only argument.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Joshua C. Randall [Thu, 23 Aug 2018 19:49:44 +0000 (19:49 +0000)]
limit concurrent slurm commands
use a semaphore channel to limit concurrent sbatch/scancel/scontrol commands to 3.
squeue is already limited to one at a time.
fixes 14110
Arvados-DCO-1.1-Signed-off-by: Joshua C. Randall <jcrandall@alum.mit.edu>
Ward Vandewege [Thu, 23 Aug 2018 16:16:08 +0000 (12:16 -0400)]
Fix for run-tests.sh: do not run sdk/R install if the --skip sdk/R option is
set.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Thu, 23 Aug 2018 13:01:27 +0000 (09:01 -0400)]
Merge branch '13823-bionic'
refs #13823
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Wed, 22 Aug 2018 12:40:41 +0000 (08:40 -0400)]
Add support for package testing to our ubuntu 18.04 packages.
refs #13823
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Wed, 22 Aug 2018 12:38:34 +0000 (08:38 -0400)]
Remove spurious error output in package testing script.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Wed, 22 Aug 2018 12:38:34 +0000 (08:38 -0400)]
Remove spurious error output in package testing script.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Wed, 22 Aug 2018 10:29:33 +0000 (06:29 -0400)]
Merge branch 'master' into 13823-bionic
refs #13823
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Wed, 22 Aug 2018 10:18:53 +0000 (06:18 -0400)]
We no longer build for Ubuntu 12.04
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Tue, 21 Aug 2018 17:18:26 +0000 (13:18 -0400)]
13959: Fix test regexps.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 21 Aug 2018 16:51:22 +0000 (12:51 -0400)]
13959: Merge branch 'master' into 13959-timeouts-and-logging
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 21 Aug 2018 15:55:51 +0000 (11:55 -0400)]
Merge branch '13924-collections-index'
closes #13924
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 21 Aug 2018 15:30:05 +0000 (11:30 -0400)]
Merge branch '14082-numbertype' refs #14082
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 21 Aug 2018 14:20:33 +0000 (10:20 -0400)]
Merge branch '14020-webdav-cors'
closes #14020
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 21 Aug 2018 01:51:04 +0000 (21:51 -0400)]
14082: Fix test
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 21 Aug 2018 01:20:21 +0000 (21:20 -0400)]
14082: Datatype validation for command, environment, mounts
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 20 Aug 2018 14:05:47 +0000 (10:05 -0400)]
14008: Add index to speed up dispatcher queries.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 20 Aug 2018 14:03:00 +0000 (10:03 -0400)]
13924: Drop redundant index.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 20 Aug 2018 13:17:26 +0000 (09:17 -0400)]
13924: Add index for PDH lookups.
Commit
2ee4ee2bb666835c41019b475dd2e286604bdd35 changed PDH lookup
queries to sort on trash_at, which can be slow without an index.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 20 Aug 2018 13:42:59 +0000 (09:42 -0400)]
14020: Allow WebDAV headers in CORS requests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 17 Aug 2018 17:13:47 +0000 (13:13 -0400)]
Merge branch '13146-shared-rails' refs #13146
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 17 Aug 2018 16:03:08 +0000 (12:03 -0400)]
13973: Set priority of child container requests based on parent
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 17 Aug 2018 15:23:38 +0000 (11:23 -0400)]
13146: Clarify documentation for shared endpoint
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Fri, 17 Aug 2018 15:01:58 +0000 (12:01 -0300)]
Merge branch '13340-wb-keep-links'
Closes #13340
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Fri, 17 Aug 2018 14:38:39 +0000 (10:38 -0400)]
13959: Merge branch 'master' into 13959-timeouts-and-logging
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 17 Aug 2018 14:32:11 +0000 (10:32 -0400)]
13933: Update error message expectation.
refs #13933
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 17 Aug 2018 14:19:29 +0000 (10:19 -0400)]
13959: Use logrus for crunch-dispatch-local logging.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Thu, 16 Aug 2018 21:40:14 +0000 (18:40 -0300)]
13340: Enhance regex to match non quoted locators
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Thu, 16 Aug 2018 21:25:11 +0000 (17:25 -0400)]
Merge branch '13933-dispatch-batch-size'
closes #13933
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 16 Aug 2018 21:23:59 +0000 (17:23 -0400)]
13933: Update error text check.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 16 Aug 2018 21:23:50 +0000 (17:23 -0400)]
13933: Fix formatting.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 16 Aug 2018 19:36:30 +0000 (15:36 -0400)]
13146: Don't return "included" field unless non-nil
Update documention/comments.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 16 Aug 2018 19:38:42 +0000 (15:38 -0400)]
13959: Use logrus for crunch-dispatch-slurm logging.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 16 Aug 2018 19:25:39 +0000 (15:25 -0400)]
13146: "included" is returned as_api_response.
Fix applying column select to "included" records.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 16 Aug 2018 19:08:13 +0000 (15:08 -0400)]
13146: Apply select clause to included objects
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 16 Aug 2018 18:53:21 +0000 (14:53 -0400)]
13959: Default 5-minute timeout for API calls.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 16 Aug 2018 18:48:36 +0000 (14:48 -0400)]
13146: Add "include" parameter and rename return field to "included"
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 16 Aug 2018 18:11:45 +0000 (14:11 -0400)]
Merge branch '13752-index-all-filenames'
refs #13752
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 16 Aug 2018 17:52:07 +0000 (13:52 -0400)]
13752: Don't rewrite entire file_names column during the migration.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 15 Aug 2018 20:49:05 +0000 (17:49 -0300)]
13340: Correctly show all locator links on a text.
This solve 2 issues:
* Show all locator links on text lines with multiple locators
* Fix the locator regex so that it doesn't include incorrect text parts
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 16 Aug 2018 15:23:57 +0000 (12:23 -0300)]
13340: Add test to expose bug
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Thu, 16 Aug 2018 15:31:36 +0000 (11:31 -0400)]
13146: FUSE tests pass
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 16 Aug 2018 15:04:25 +0000 (11:04 -0400)]
13146: FUSE uses the "groups.shared" API for shared/ directory.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 16 Aug 2018 14:38:55 +0000 (10:38 -0400)]
13146: Add tests for shared endpoint.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 16 Aug 2018 14:14:28 +0000 (10:14 -0400)]
Merge branch '13198-metrics-docs'
closes #13198
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 16 Aug 2018 14:14:10 +0000 (10:14 -0400)]
13198: Note keep-web metrics in admin docs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Wed, 15 Aug 2018 18:44:27 +0000 (14:44 -0400)]
13146: Update comment
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 15 Aug 2018 18:28:13 +0000 (14:28 -0400)]
13146: Support for query filters, "includes"
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Tue, 14 Aug 2018 19:38:54 +0000 (16:38 -0300)]
Merge branch '14028-wb-textile-html-sanitization'
Closes #14028
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 14 Aug 2018 18:01:28 +0000 (15:01 -0300)]
14028: Confirm that safe tags (like <b></b>) don't get cleaned by sanitize()
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Tue, 14 Aug 2018 17:49:17 +0000 (13:49 -0400)]
Merge branch 'jrandall/patch-4' refs #14017
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Tue, 14 Aug 2018 17:01:36 +0000 (14:01 -0300)]
14028: Sanitize RedCloth's output.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 14 Aug 2018 17:32:47 +0000 (14:32 -0300)]
14028: Add test exposing the bug
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Joshua C. Randall [Mon, 13 Aug 2018 12:01:10 +0000 (12:01 +0000)]
Make dispatcher Run loop use count=none and BatchSize limit
Arvados-DCO-1.1-Signed-off-by: Joshua C. Randall <jcrandall@alum.mit.edu>
Peter Amstutz [Mon, 13 Aug 2018 20:14:59 +0000 (16:14 -0400)]
Merge branch '13931-uri-unquote' refs #13931
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 13 Aug 2018 18:50:53 +0000 (14:50 -0400)]
13931: un-uriquote keep: URIs when converting to (collection, path) tuple
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Joshua C. Randall [Mon, 13 Aug 2018 14:47:03 +0000 (15:47 +0100)]
fix "submitted container [uuid]" log from a-c-r
fixes 14017
Arvados-DCO-1.1-Signed-off-by: Joshua C. Randall <jcrandall@alum.mit.edu>
Tom Clegg [Mon, 13 Aug 2018 14:10:36 +0000 (10:10 -0400)]
Note slow migration in upgrade notes.
refs #13752
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 13 Aug 2018 13:37:28 +0000 (09:37 -0400)]
Merge branch '13399-nb-squeue-check'
refs #13399
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 10 Aug 2018 18:28:17 +0000 (14:28 -0400)]
Fix version dependency on 'typing' refs #13931
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 10 Aug 2018 15:17:19 +0000 (11:17 -0400)]
Merge branch '13976-acr-keep-references' refs #13976
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 10 Aug 2018 14:30:55 +0000 (10:30 -0400)]
13976: Add code comment about only_real in upload_dependencies
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 10 Aug 2018 14:14:31 +0000 (10:14 -0400)]
13976: Filter out keep references with secondaryFiles from list of files to upload
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 9 Aug 2018 20:53:06 +0000 (16:53 -0400)]
13399: Don't block job submissions during release/renice batches.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 9 Aug 2018 19:27:57 +0000 (15:27 -0400)]
Merge branch 'wtsi-hgi-13558-debug-log-tag-req-id'
closes #13558
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 9 Aug 2018 19:06:28 +0000 (15:06 -0400)]
13558: Merge branch 'master' into wtsi-hgi-13558-debug-log-tag-req-id
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 9 Aug 2018 16:53:45 +0000 (12:53 -0400)]
Fix version of 'typing' dep refs #13931
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
projects / arvados.git / log