Peter Amstutz [Wed, 8 Oct 2014 18:50:12 +0000 (14:50 -0400)]
Merge branch '4042-run-command-MxN' of git.curoverse.com:arvados into 4042-run-command-MxN
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Peter Amstutz [Wed, 8 Oct 2014 18:49:54 +0000 (14:49 -0400)]
4042: Update documentation samples. Small fix to dry-run to allow supplying custom TASK_KEEPMOUNT.
Peter Amstutz [Wed, 8 Oct 2014 15:12:57 +0000 (11:12 -0400)]
4042: Rename bad reuse of 'p' to 'match' in expand_item. Finish describing
$(task.outdir). Clarify that list functions take a user parameter name. Fix
other spelling and grammatical errors in documentation.
Peter Amstutz [Mon, 6 Oct 2014 20:30:29 +0000 (16:30 -0400)]
4042: When listing directory, return list of absolute paths
Peter Amstutz [Fri, 3 Oct 2014 19:44:50 +0000 (15:44 -0400)]
4042: Add dry-run mode to run-command. Test and fix examples from documentation.
Peter Amstutz [Fri, 3 Oct 2014 17:43:56 +0000 (13:43 -0400)]
4042: First draft document complete, need to verify that examples all work.
Peter Amstutz [Fri, 3 Oct 2014 17:43:39 +0000 (13:43 -0400)]
4042: Functions defined in get_items() now moved into expand_items()
Peter Amstutz [Fri, 3 Oct 2014 17:42:47 +0000 (13:42 -0400)]
4042: Subst will raise exceptions if files/directories don't exist.
Peter Amstutz [Thu, 2 Oct 2014 21:11:23 +0000 (17:11 -0400)]
4042: Getting started on run-command reference
Peter Amstutz [Thu, 2 Oct 2014 20:29:55 +0000 (16:29 -0400)]
4042: Start working on run-command reference page.
Peter Amstutz [Thu, 2 Oct 2014 19:18:27 +0000 (15:18 -0400)]
4042: another expand fix
Peter Amstutz [Thu, 2 Oct 2014 19:15:08 +0000 (15:15 -0400)]
4042: expand list fix
Peter Amstutz [Thu, 2 Oct 2014 19:12:14 +0000 (15:12 -0400)]
4042: add command pattern to list index
Peter Amstutz [Thu, 2 Oct 2014 19:04:35 +0000 (15:04 -0400)]
4042: fix bad keys
Peter Amstutz [Thu, 2 Oct 2014 19:01:46 +0000 (15:01 -0400)]
4042: fix bad syntax
Peter Amstutz [Thu, 2 Oct 2014 18:58:20 +0000 (14:58 -0400)]
4042: Add list index
Peter Amstutz [Thu, 2 Oct 2014 18:49:58 +0000 (14:49 -0400)]
4042: add "extract"
Peter Amstutz [Thu, 2 Oct 2014 18:02:21 +0000 (14:02 -0400)]
4042: list handling bugfix
Peter Amstutz [Thu, 2 Oct 2014 17:53:27 +0000 (13:53 -0400)]
4042: Fix syntax error
Peter Amstutz [Thu, 2 Oct 2014 17:44:47 +0000 (13:44 -0400)]
4042: Add support for filter and group of lists
Peter Amstutz [Thu, 2 Oct 2014 15:46:24 +0000 (11:46 -0400)]
4042: task.foreach should now accept multiple parameters and generate tasks
based on the cartesian product of all input lists.
Peter Amstutz [Thu, 2 Oct 2014 13:22:28 +0000 (09:22 -0400)]
Add test fixture to fix "test_cancel_someone_else's_visible_job" refs #3859
Peter Amstutz [Thu, 2 Oct 2014 02:01:19 +0000 (22:01 -0400)]
Merge branch '3859-api-job-lock-method' refs #3859
Tom Clegg [Wed, 1 Oct 2014 19:36:46 +0000 (15:36 -0400)]
Merge branch '3782-stub-file-content' refs #3782
Tom Clegg [Wed, 1 Oct 2014 19:35:33 +0000 (15:35 -0400)]
3782: Merge branch 'master' into 3782-stub-file-content
Tom Clegg [Wed, 1 Oct 2014 19:12:07 +0000 (15:12 -0400)]
3782: Use stubbed file content for "inactive user can retrieve user agreement" test.
Tim Pierce [Wed, 1 Oct 2014 18:59:30 +0000 (14:59 -0400)]
Merge branch '4000-rerun-pipeline-changed-template'
Closes #4000.
Tim Pierce [Wed, 1 Oct 2014 18:58:58 +0000 (14:58 -0400)]
4000: update both functional tests.
Tim Pierce [Wed, 1 Oct 2014 18:28:38 +0000 (14:28 -0400)]
4000: tighten up functional test
Updated the test to ensure that a copied pipeline instance actually has
the expected script_parameters from both the source instance and source
template, respectively.
Peter Amstutz [Wed, 1 Oct 2014 18:23:21 +0000 (14:23 -0400)]
Use job state field instead of running/success columns. refs #3898
Peter Amstutz [Wed, 1 Oct 2014 17:06:17 +0000 (13:06 -0400)]
3859: unit test for job state changes
Tom Clegg [Wed, 1 Oct 2014 16:08:01 +0000 (12:08 -0400)]
3782: Merge branch 'master' into 3782-stub-file-content
Tom Clegg [Wed, 1 Oct 2014 16:07:58 +0000 (12:07 -0400)]
3782: Remove obsolete helper method.
Peter Amstutz [Wed, 1 Oct 2014 15:23:37 +0000 (11:23 -0400)]
3859: Added AlreadyLockedError for job lock conflict. Added runningbarbaz
fixture so test "cancel someone else's visible job" is testing the right thing.
Peter Amstutz [Wed, 1 Oct 2014 13:47:01 +0000 (09:47 -0400)]
Merge branch '4004-restore-dashboard-buttons' closes #4004
Peter Amstutz [Wed, 1 Oct 2014 13:46:14 +0000 (09:46 -0400)]
4004: Add newlines for readability
Peter Amstutz [Wed, 1 Oct 2014 01:51:41 +0000 (21:51 -0400)]
3899: Fix for counting complete/failed components refs #3899
Peter Amstutz [Wed, 1 Oct 2014 01:30:56 +0000 (21:30 -0400)]
3859: Add functional test for locking and fix tests broken by validate_state_change.
Peter Amstutz [Wed, 1 Oct 2014 00:11:27 +0000 (20:11 -0400)]
Merge branch 'master' into 3859-api-job-lock-method
Tim Pierce [Tue, 30 Sep 2014 22:07:15 +0000 (18:07 -0400)]
4000: fix copying pipeline instances with newer templates
* When copying script parameters from a pipeline instance, check that
the component exists in the source instance before blindly
dereferencing it.
* Added tests for copying when components=use_latest and when
script=use_same (the two edge cases exposed by this bug)
Peter Amstutz [Tue, 30 Sep 2014 20:56:52 +0000 (16:56 -0400)]
3859: Cleaned up validate_state_change. Added unit test for job locking.
Peter Amstutz [Tue, 30 Sep 2014 19:40:37 +0000 (15:40 -0400)]
4004: Rename "Compute status" to "Compute and job status". Added integration
tests for buttons. Reduced dashboard page rendering time by at least 25% by
batching certain API server requests (previously happing per-object),
Tim Pierce [Tue, 30 Sep 2014 17:52:38 +0000 (13:52 -0400)]
Merge branch '3961-uuid-assignment-not-permitted'
Closes #3961.
Tim Pierce [Tue, 30 Sep 2014 17:51:54 +0000 (13:51 -0400)]
3961: fix FuseSharedTest
Added new active_user collection to the FuseSharedTest.
Tim Pierce [Tue, 30 Sep 2014 17:01:07 +0000 (13:01 -0400)]
Merge branch '3961-uuid-assignment-not-permitted'
Closes #3961.
Tim Pierce [Tue, 30 Sep 2014 16:59:40 +0000 (12:59 -0400)]
3961: more explicit assertions and error text
Tom Clegg [Tue, 30 Sep 2014 14:57:13 +0000 (10:57 -0400)]
3782: Isolate file_enumerator stubbing to the current test. Introduce mocha.
Tim Pierce [Tue, 30 Sep 2014 04:42:16 +0000 (00:42 -0400)]
3961: test creating subprojects under home with duplicate names
New tests:
* unprivileged user creating a subproject under their home project, with
an existing name, returns 422
* unprivileged user creating a subproject under their home project, with
an existing name, and ensure_unique_name=true, succeeds
Brett Smith [Mon, 29 Sep 2014 20:07:55 +0000 (16:07 -0400)]
3866: PySDK KeepClient accommodates services with IPv6 addresses.
I thought there was going to be a nicer way to construct URLs than
this, but urllib.urlunparse is still expecting the host+port as a
single string, so this approach is easier. Closes #3866.
Brett Smith [Mon, 29 Sep 2014 16:28:36 +0000 (12:28 -0400)]
Merge branch '3848-egg-default-git-tag-wip'
Closes #3848, #3952.
Brett Smith [Fri, 26 Sep 2014 21:06:15 +0000 (17:06 -0400)]
3848: Package version numbers use UTC timestamps.
Per note-9 in the issue.
Brett Smith [Mon, 22 Sep 2014 20:45:19 +0000 (16:45 -0400)]
3848: Python packages build with git tag by default.
This moves the build logic that we currently encode in Jenkins into
our setup.py, and makes it easier for developers to have versions in
sync with real users.
radhika [Mon, 29 Sep 2014 15:13:50 +0000 (11:13 -0400)]
closes #3889
Merge branch '3889-functional-testing'
Tim Pierce [Mon, 29 Sep 2014 15:06:49 +0000 (11:06 -0400)]
3961: reset object UUID when ensure_unique_name is set
When saving an object that has to be renamed with ensure_unique_name,
force @object.uuid to nil so that validate_uuid will not be confused
into thinking we are trying to reassign the uuid.
radhika [Mon, 29 Sep 2014 14:50:36 +0000 (10:50 -0400)]
Merge branch 'master' into 3889-functional-testing
Tom Clegg [Mon, 29 Sep 2014 14:32:00 +0000 (10:32 -0400)]
Merge branch '3616-live-stream' closes #3616
radhika [Sat, 27 Sep 2014 01:50:16 +0000 (21:50 -0400)]
Merge branch 'master' into 3889-functional-testing
radhika [Sat, 27 Sep 2014 01:48:51 +0000 (21:48 -0400)]
3889: add a new integration tester for users controller. Refactor code so that users functional and integration tests can reuse some of the helper methods.
Peter Amstutz [Fri, 26 Sep 2014 20:44:35 +0000 (16:44 -0400)]
Merge branch '3871-non-ascii-project-names' closes #3871
Tom Clegg [Fri, 26 Sep 2014 20:26:27 +0000 (16:26 -0400)]
3616: Use "ensure" to close response stream.
Peter Amstutz [Fri, 26 Sep 2014 20:06:28 +0000 (16:06 -0400)]
3871: Pass on UnicodeEncodeError. Don't return those entries in the directory
listing because the user won't be able to access them anyway. Add --encoding
parameter to command line to allow the user to specify desired filesystem
encoding.
radhika [Fri, 26 Sep 2014 20:03:30 +0000 (16:03 -0400)]
Merge branch 'master' into 3889-functional-testing
Conflicts:
services/fuse/tests/test_mount.py
Tim Pierce [Fri, 26 Sep 2014 19:51:10 +0000 (15:51 -0400)]
Merge branch '3901-component-rendering-errors'
Refs #3901.
Tom Clegg [Fri, 26 Sep 2014 19:46:09 +0000 (15:46 -0400)]
3616: Use ActionController::Live to avoid buffering entire response in memory.
Tim Pierce [Fri, 26 Sep 2014 19:42:12 +0000 (15:42 -0400)]
Merge branch 'master' into 3901-component-rendering-errors
Conflicts:
apps/workbench/app/helpers/pipeline_instances_helper.rb
radhika [Fri, 26 Sep 2014 19:33:40 +0000 (15:33 -0400)]
closes #3836
Merge branch '3836-remove-collection-from-project-bug'
radhika [Fri, 26 Sep 2014 19:32:52 +0000 (15:32 -0400)]
Merge branch 'master' into 3836-remove-collection-from-project-bug
radhika [Fri, 26 Sep 2014 19:30:33 +0000 (15:30 -0400)]
3889: minor test assertion updates
radhika [Fri, 26 Sep 2014 18:44:53 +0000 (14:44 -0400)]
3889: remove the job fixture "job_with_unnormalized_output_and_log" and instead use "foobar"
Tim Pierce [Fri, 26 Sep 2014 17:45:43 +0000 (13:45 -0400)]
3901: added unit test for pipeline rendering
radhika [Fri, 26 Sep 2014 17:35:14 +0000 (13:35 -0400)]
Merge branch 'master' into 3889-functional-testing
Conflicts:
services/api/test/fixtures/jobs.yml
radhika [Fri, 26 Sep 2014 17:24:56 +0000 (13:24 -0400)]
3889: some monir assertion updates.
Tom Clegg [Fri, 26 Sep 2014 15:29:38 +0000 (11:29 -0400)]
Fix typo in error message. Refs #3961
Peter Amstutz [Fri, 26 Sep 2014 15:02:06 +0000 (11:02 -0400)]
Merge branch 'master' into 3859-api-job-lock-method
Conflicts:
services/api/script/crunch-dispatch.rb
Peter Amstutz [Fri, 26 Sep 2014 14:53:42 +0000 (10:53 -0400)]
3871: Encode/decode file and directory names to UTF-8
Peter Amstutz [Fri, 26 Sep 2014 14:43:02 +0000 (10:43 -0400)]
4004: Put "All jobs/pipelines/collections" buttons back onto dashboard. Also
tweak minimum height of top panels so they line up.
Peter Amstutz [Fri, 26 Sep 2014 14:31:49 +0000 (10:31 -0400)]
Merge branch '3899-crunch-use-job-state' closes #3899
Peter Amstutz [Fri, 26 Sep 2014 14:23:03 +0000 (10:23 -0400)]
3899: Uncomment line that was commented out for debugging and committed by mistake.
radhika [Fri, 26 Sep 2014 14:22:24 +0000 (10:22 -0400)]
3889: add "#{user} can get collection using portable data hash" test
Peter Amstutz [Fri, 26 Sep 2014 14:20:15 +0000 (10:20 -0400)]
3899: pipeline_instances_helper: Don't set :state if it's already set. Add newline to jobs.yml.
Peter Amstutz [Fri, 26 Sep 2014 13:55:43 +0000 (09:55 -0400)]
Merge branch '3168-crunch-git-fetch' closes #3168
Peter Amstutz [Fri, 26 Sep 2014 13:48:58 +0000 (09:48 -0400)]
Remove useless take() and untake() methods.
Peter Amstutz [Fri, 26 Sep 2014 13:47:52 +0000 (09:47 -0400)]
3168: Instead of crashing using save! log an error and go to the next job.
Peter Amstutz [Fri, 26 Sep 2014 13:01:22 +0000 (09:01 -0400)]
Merge remote-tracking branch 'origin/master' into 3899-crunch-use-job-state
Peter Amstutz [Fri, 26 Sep 2014 12:41:58 +0000 (08:41 -0400)]
3899: jobs_controller uses state = Queued instead of multiple state columns.
Updated fixture so that tests pass.
Tom Clegg [Fri, 26 Sep 2014 05:46:50 +0000 (01:46 -0400)]
Merge branch '3991-docker-workbench-address' closes #3991
radhika [Fri, 26 Sep 2014 02:25:16 +0000 (22:25 -0400)]
3889: update the fuse test to expect the newly added pipeline instances.
Tom Clegg [Fri, 26 Sep 2014 01:55:17 +0000 (21:55 -0400)]
3991: Merge branch 'master' into 3991-docker-workbench-address
Peter Amstutz [Fri, 26 Sep 2014 01:26:27 +0000 (21:26 -0400)]
3168: Fail on git tag collision instead of putting job back into the queue.
Peter Amstutz [Fri, 26 Sep 2014 00:41:41 +0000 (20:41 -0400)]
3899: Set :state in pipeline_instance_helper.rb and remove Job::state.
Tom Clegg [Thu, 25 Sep 2014 23:46:08 +0000 (19:46 -0400)]
3991: Fix config checks in admin_notifier.
radhika [Thu, 25 Sep 2014 21:12:55 +0000 (17:12 -0400)]
Merge branch 'master' into 3889-functional-testing
radhika [Thu, 25 Sep 2014 21:11:31 +0000 (17:11 -0400)]
3889: Since all offending tests are fixed, update test_helper to generate an error if any functional test performs more than one action in on test in the future.
radhika [Thu, 25 Sep 2014 20:43:54 +0000 (16:43 -0400)]
3889: update the test "update script_parameters one at a time using merge param" to use fixture instead of create a new pipeline instance.
Tom Clegg [Thu, 25 Sep 2014 20:30:33 +0000 (16:30 -0400)]
3991: Change docker default to "no root url redirect". Make "not found" message more friendly.
Tim Pierce [Thu, 25 Sep 2014 20:20:48 +0000 (16:20 -0400)]
Merge branch 'master' into 3901-component-rendering-errors
Tim Pierce [Thu, 25 Sep 2014 19:08:18 +0000 (15:08 -0400)]
3901: allow job to be either Hash or Job
Refactoring to ensure that a component "job" data structure may either
be a Hash (parsed directly from the component's JSON representation) or
a real Job object retrieved from the database.
When rendering a pipeline, parse the :started_at and :finished_at
timestamp fields, respectively, if necessary.
radhika [Thu, 25 Sep 2014 19:31:26 +0000 (15:31 -0400)]
3889: add fixture "pipeline_with_tagged_collection_input"
Peter Amstutz [Thu, 25 Sep 2014 19:24:52 +0000 (15:24 -0400)]
3988: Add note to Job.state. Replace logic to compute state based on
success/running columns with the same logic as used on apiserver.
Tim Pierce [Thu, 25 Sep 2014 19:09:25 +0000 (15:09 -0400)]
bug fix: args_retries => args.retries
No issue #
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