Lucas Di Pentima [Tue, 10 Jul 2018 17:47:52 +0000 (14:47 -0300)]
13668: Replaced package_version with packageVersion on discovery doc.
Also, enhanced package version caching on api server & workbench.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 9 Jul 2018 21:01:19 +0000 (18:01 -0300)]
13668: Adds package version to workbench. Reports versions on dialog.
API & Workbench package versions are displayed on the 'Show version' &
'Report problem' dialogs.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 9 Jul 2018 20:24:56 +0000 (17:24 -0300)]
13668: Adds support for package version on API server.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Mon, 9 Jul 2018 16:41:24 +0000 (12:41 -0400)]
Merge branch '13766-libyaml-workaround' refs #13766
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 9 Jul 2018 12:48:16 +0000 (08:48 -0400)]
Merge branch '13681-wb-acr-submit-ram' closes #13681
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 6 Jul 2018 19:41:46 +0000 (15:41 -0400)]
13681: Fix workbench for workflows that don't have "hints"
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 6 Jul 2018 17:48:34 +0000 (13:48 -0400)]
13681: Revert to yaml.round_trip_dump instead of json.dumps().
Also style tweaks.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 5 Jul 2018 20:28:13 +0000 (16:28 -0400)]
13681: Add new test file
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 5 Jul 2018 19:15:16 +0000 (15:15 -0400)]
13681: Update documentation for arv:WorkflowRunnerResources
Also bring default allocation for cwl-runner launched by workbench in
line with a-c-r command line (1 GiB / 1 core).
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 5 Jul 2018 19:03:41 +0000 (15:03 -0400)]
13681: Can use --submit-runner-ram with --create/update-workflow
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 5 Jul 2018 18:39:13 +0000 (14:39 -0400)]
13681: Implement WorkflowRunnerResources hint
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 6 Jul 2018 22:12:29 +0000 (18:12 -0400)]
13766: upload_workflow dumps to json
Workaround for incompatibility between Python ruamel.yaml and Ruby
Psych/libyaml over ":" appearing in unquoted strings in "flow style"
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 6 Jul 2018 14:39:49 +0000 (10:39 -0400)]
Merge branch '13692-acr-error' closes #13692
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 5 Jul 2018 21:25:43 +0000 (17:25 -0400)]
Fix "order" param docs for groups#contents.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 5 Jul 2018 21:03:11 +0000 (17:03 -0400)]
13692: Make Python SDK error reporting more user friendly.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 5 Jul 2018 19:31:46 +0000 (16:31 -0300)]
Merge branch '13219-arv-cwl-schema-fix'
Refs #13219
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 5 Jul 2018 17:32:46 +0000 (14:32 -0300)]
13219: Adds documentation
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 3 Jul 2018 19:37:39 +0000 (16:37 -0300)]
13219: Adds TimeLimit support on Arvados CWL schema.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Fuad Muhic [Tue, 3 Jul 2018 15:17:33 +0000 (17:17 +0200)]
Merge branch '13613-document-min-r-version'
closes #13613
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Ward Vandewege [Tue, 3 Jul 2018 11:18:09 +0000 (07:18 -0400)]
Merge branch '13547-respect-insecure-flag-when-talking-ssl-to-keep'
closes #13547
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Mon, 2 Jul 2018 19:47:29 +0000 (15:47 -0400)]
Fix startup warning by setting log_level explicitly.
fixes #11594
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Mon, 2 Jul 2018 18:12:32 +0000 (15:12 -0300)]
Merge branch '13219-jobs-time-limit'
Closes #13219
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 2 Jul 2018 18:10:27 +0000 (15:10 -0300)]
13219: Simplifies test
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 2 Jul 2018 17:03:43 +0000 (14:03 -0300)]
13219: Adds TimeLimit support on arvados-cwl-runner
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Mon, 2 Jul 2018 15:16:19 +0000 (11:16 -0400)]
Fix crash in error handler.
fatal: ambiguous argument 'c97qk-8i9sb-nmca4v1scg9910o': unknown revision or path not in the working tree.
Use '--' to separate paths from revisions, like this:
'git <command> [<revision>...] -- [<file>...]'
bundler: failed to load command: ./script/crunch-dispatch.rb (./script/crunch-dispatch.rb)
NameError: undefined local variable or method `job' for #<CrunchDispatch:0x000000000534bdb8>
/var/www/arvados-api/current/lib/crunch_dispatch.rb:321:in `tag_commit'
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 2 Jul 2018 15:10:20 +0000 (11:10 -0400)]
13547: Test insecure-tls flag passed through to pycurl.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 29 Jun 2018 20:48:33 +0000 (16:48 -0400)]
13547: Merge branch 'master' into 13547-respect-insecure-flag-when-talking-ssl-to-keep
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 29 Jun 2018 20:46:45 +0000 (16:46 -0400)]
Merge branch '13569-size-prefixes'
closes #13569
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 29 Jun 2018 20:21:52 +0000 (16:21 -0400)]
13569: Accept all JSON numbers (decimals, exponents), not just ints.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 29 Jun 2018 19:40:22 +0000 (15:40 -0400)]
13547: Avoid leaking insecure flag between different configs.
Even if the default configuration file/environment indicates a local
cluster that doesn't need verification, a program like arv-copy can
also connect to a remote cluster using a settings/config file that has
verification enabled. In this case, TLS verification should be
enabled.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 29 Jun 2018 18:52:48 +0000 (14:52 -0400)]
13547: Fix up formatting.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 29 Jun 2018 16:50:22 +0000 (12:50 -0400)]
13569: Update dispatchcloud to use arvados.ByteSize.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 28 Jun 2018 21:30:35 +0000 (17:30 -0400)]
13569: Accept metric/binary-prefixed units in RAM/scratch configs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 22 Jun 2018 18:16:05 +0000 (14:16 -0400)]
13674: Don't build heavy error unless needed.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Jun 2018 19:25:29 +0000 (15:25 -0400)]
13674: Change InstanceTypes config from array to hash.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 27 Jun 2018 20:43:58 +0000 (17:43 -0300)]
13219: Moves time out code from dispatch to crunch-run
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 27 Jun 2018 18:30:05 +0000 (15:30 -0300)]
13219: Removes unnecessary default max_run_time scheduling parameter
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 27 Jun 2018 17:48:14 +0000 (14:48 -0300)]
Merge branch '13649-spot-instances-doc'
Refs #13649
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 27 Jun 2018 17:47:14 +0000 (14:47 -0300)]
13649: Fixes in wording
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 27 Jun 2018 13:16:23 +0000 (10:16 -0300)]
13219: Checks for expired run time and cancel container if needed.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 26 Jun 2018 17:12:03 +0000 (14:12 -0300)]
13219: Adds default max_run_time value with validation, documentation and tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Tue, 26 Jun 2018 15:43:10 +0000 (11:43 -0400)]
Minikube is not supported yet by our Arvados on Kubernetes Helm Chart.
refs #13650
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Mon, 25 Jun 2018 20:53:17 +0000 (16:53 -0400)]
13650: Merge branch '13650-document-arvados-kubernetes'
refs #13650
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Mon, 25 Jun 2018 20:52:33 +0000 (16:52 -0400)]
Further doc improvements for Arvados on Kubernetes.
refs #13650
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Mon, 25 Jun 2018 20:46:40 +0000 (17:46 -0300)]
13649: Adds admin documentation describing how to set up spot instances.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Mon, 25 Jun 2018 19:11:27 +0000 (15:11 -0400)]
13650: Merge branch '13650-document-arvados-kubernetes'
refs #13650
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Mon, 25 Jun 2018 19:10:32 +0000 (15:10 -0400)]
13650: Merge branch 'master' into 13650-document-arvados-kubernetes
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Mon, 25 Jun 2018 19:01:18 +0000 (15:01 -0400)]
13650: Merge branch 'master' into 13650-document-arvados-kubernetes
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Mon, 25 Jun 2018 18:56:44 +0000 (14:56 -0400)]
A series of documentation improvements based on review feedback.
refs #13650
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Thu, 21 Jun 2018 18:44:40 +0000 (14:44 -0400)]
Add basic documentation for the new Arvados on Kubernetes install option.
refs #13650
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Wed, 20 Jun 2018 17:19:47 +0000 (13:19 -0400)]
13627: Make sure work_api is set on runtimeContext.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 18 Jun 2018 14:40:26 +0000 (10:40 -0400)]
13164: Fix priority of containers that have priority=0 due to races.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Tue, 19 Jun 2018 17:02:07 +0000 (14:02 -0300)]
7478: Replaces term 'preemptable' with 'preemptible'
Also added config & documentation on EC2 example config file.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Tue, 19 Jun 2018 20:29:25 +0000 (16:29 -0400)]
Add mypy-extensions to build.list refs #13627
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 25 Jun 2018 15:11:04 +0000 (11:11 -0400)]
Merge branch '13255-account-activation' closes #13255
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 22 Jun 2018 20:20:42 +0000 (16:20 -0400)]
Merge branch 'master' into 13255-account-activation
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 22 Jun 2018 20:16:03 +0000 (16:16 -0400)]
13255: Add documentation & test that remote users can be pre-activated.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 22 Jun 2018 17:47:37 +0000 (13:47 -0400)]
Ensure $WORKSPACE/tmp/ exists. Fix unchecked error.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Fri, 22 Jun 2018 17:41:22 +0000 (14:41 -0300)]
Merge branch '13649-preemptible-committed-child-cr'
Refs #13649
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 22 Jun 2018 17:38:43 +0000 (14:38 -0300)]
13649: Merges 2 tests into one.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Fri, 22 Jun 2018 15:41:50 +0000 (11:41 -0400)]
13255: Doc format tweaks
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Tue, 19 Jun 2018 22:47:21 +0000 (19:47 -0300)]
13649: Fixes default preemptible parameter when submitting committed child CRs
Two problems fixed:
1) When submitting a committed child CR, its preemptible parameter is set.
2) Resolve a container for said child CR after the preemptible parameter setting.
Added tests for committed child CR submissions.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Fri, 22 Jun 2018 02:41:31 +0000 (22:41 -0400)]
13255: Add test for auto_activate_users_from
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 21 Jun 2018 20:21:10 +0000 (16:21 -0400)]
13255: Implement auto_activate_users_from
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 21 Jun 2018 19:48:28 +0000 (15:48 -0400)]
13255: More discussion of federated users in account activation
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 21 Jun 2018 17:50:59 +0000 (13:50 -0400)]
13255: Edits
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 21 Jun 2018 16:58:25 +0000 (12:58 -0400)]
13255: Account activate docs wip
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Fuad Muhic [Thu, 21 Jun 2018 15:15:52 +0000 (17:15 +0200)]
Update README to document min R version required for ArvadosR
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Thu, 21 Jun 2018 14:56:19 +0000 (16:56 +0200)]
Add runtime check for min R version.
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Peter Amstutz [Wed, 20 Jun 2018 17:51:10 +0000 (13:51 -0400)]
Merge branch '13627-set-work-api' refs #13627
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 20 Jun 2018 17:19:47 +0000 (13:19 -0400)]
13627: Make sure work_api is set on runtimeContext.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Wed, 20 Jun 2018 13:25:25 +0000 (09:25 -0400)]
Merge branch '13164-fix-zero-priority-after-race'
refs #13164
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Tue, 19 Jun 2018 21:21:57 +0000 (18:21 -0300)]
Merge branch '7478-s-preemptable-preemptible'
Refs #7478
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Tue, 19 Jun 2018 20:29:25 +0000 (16:29 -0400)]
Add mypy-extensions to build.list refs #13627
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 19 Jun 2018 20:16:32 +0000 (16:16 -0400)]
Merge branch '13638-acr-version' refs #13638
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 19 Jun 2018 19:53:02 +0000 (15:53 -0400)]
13638: Restore logic of arvados-cwl-runner version is max(sdk, acr)
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 19 Jun 2018 19:21:11 +0000 (15:21 -0400)]
Merge branch '13627-update-cwltool' refs #13627
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Tue, 19 Jun 2018 18:31:24 +0000 (15:31 -0300)]
Merge branch 'master' into 7478-s-preemptable-preemptible
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 19 Jun 2018 17:45:03 +0000 (13:45 -0400)]
Merge branch '13497-controller'
refs #13497
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 19 Jun 2018 17:44:45 +0000 (13:44 -0400)]
13627: Tweak test to possibly avoid name clash
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 19 Jun 2018 17:43:16 +0000 (13:43 -0400)]
13497: Ensure every test run produces something in tmp/*.log.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Tue, 19 Jun 2018 17:02:07 +0000 (14:02 -0300)]
7478: Replaces term 'preemptable' with 'preemptible'
Also added config & documentation on EC2 example config file.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 19 Jun 2018 16:31:08 +0000 (12:31 -0400)]
13497: Merge branch 'master' into 13497-controller
refs #13497
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 18 Jun 2018 19:27:23 +0000 (15:27 -0400)]
Merge branch '13579-keepstore-config-doc' refs #13579 refs #13580
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 18 Jun 2018 19:22:42 +0000 (15:22 -0400)]
13627: Fix tests after rebase
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 15 Jun 2018 20:58:50 +0000 (16:58 -0400)]
13627: Fix ArvadosWorkflow use of Builder
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 15 Jun 2018 14:59:24 +0000 (10:59 -0400)]
13627: Fix crunch_script
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 15 Jun 2018 14:49:45 +0000 (10:49 -0400)]
13627: Add missing file.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 15 Jun 2018 14:40:43 +0000 (10:40 -0400)]
13627: Improve error reporting.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 15 Jun 2018 14:11:01 +0000 (10:11 -0400)]
13627: Fix loadingContext used for reloading document.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 15 Jun 2018 02:38:57 +0000 (22:38 -0400)]
13627: a-c-r migration to cwltool loading/runtimeContext API
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 14 Jun 2018 21:56:13 +0000 (17:56 -0400)]
API fixup
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 18 Jun 2018 18:36:33 +0000 (14:36 -0400)]
13580: Add arvados-cwl-runner to storage class usage docs.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 18 Jun 2018 14:54:05 +0000 (10:54 -0400)]
13580: Add storage classes section to user guide
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Fuad Muhic [Mon, 18 Jun 2018 14:47:23 +0000 (16:47 +0200)]
Merge branch '13429-cwl-runner-storage-classes-support'
closes #13429
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Tom Clegg [Mon, 18 Jun 2018 14:40:26 +0000 (10:40 -0400)]
13164: Fix priority of containers that have priority=0 due to races.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 18 Jun 2018 14:28:15 +0000 (10:28 -0400)]
13579: Add a little more introductory material on allocating resources
for keepstore
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Fuad Muhic [Mon, 18 Jun 2018 09:03:33 +0000 (11:03 +0200)]
Merge branch 'master' of git.curoverse.com:arvados into 13429-cwl-runner-storage-classes-support
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Fuad Muhic [Mon, 18 Jun 2018 08:58:33 +0000 (10:58 +0200)]
Add storage_classes tests for arvados_cwl_runner
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>
Tom Clegg [Fri, 15 Jun 2018 20:18:09 +0000 (16:18 -0400)]
13497: Merge branch 'master' into 13497-controller
refs #13497
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
projects / arvados.git / log