arvados.git
9 years ago3112: add scrollbar to the report issue popup
radhika [Tue, 26 Aug 2014 16:10:05 +0000 (12:10 -0400)]
3112: add scrollbar to the report issue popup

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Tue, 26 Aug 2014 15:42:01 +0000 (11:42 -0400)]
Merge branch 'master' into 3112-report-bug

9 years ago3112: skip filters in actions controller, instead of application controller
radhika [Tue, 26 Aug 2014 15:40:36 +0000 (11:40 -0400)]
3112: skip filters in actions controller, instead of application controller

9 years agoMerge branch '3136-stale-pipeline-instance-display' closes #3136
Peter Amstutz [Tue, 26 Aug 2014 15:36:12 +0000 (11:36 -0400)]
Merge branch '3136-stale-pipeline-instance-display' closes #3136

9 years ago3112: no need to reload after sending report.
radhika [Tue, 26 Aug 2014 15:32:59 +0000 (11:32 -0400)]
3112: no need to reload after sending report.

9 years agoMerge branch '3147-pysdk-retries'
Brett Smith [Tue, 26 Aug 2014 15:32:10 +0000 (11:32 -0400)]
Merge branch '3147-pysdk-retries'

Closes #3147.

9 years ago3147: Fix unwanted integer division in KeepClient logs.
Brett Smith [Tue, 26 Aug 2014 00:58:37 +0000 (20:58 -0400)]
3147: Fix unwanted integer division in KeepClient logs.

9 years ago3147: Add retry support to Python SDK's KeepClient.
Brett Smith [Fri, 22 Aug 2014 17:38:40 +0000 (13:38 -0400)]
3147: Add retry support to Python SDK's KeepClient.

9 years ago3147: Remove old Keep signing support from Python SDK.
Brett Smith [Fri, 22 Aug 2014 19:57:36 +0000 (15:57 -0400)]
3147: Remove old Keep signing support from Python SDK.

Per Tom.

9 years ago3147: Add check_http_response_success to Python SDK.
Brett Smith [Tue, 26 Aug 2014 13:46:46 +0000 (09:46 -0400)]
3147: Add check_http_response_success to Python SDK.

Other parts of the SDK need to end loops based on the result of an
HTTP request.  This function puts that logic in one place.

9 years ago3147: Add RetryLoop to the Python SDK.
Brett Smith [Tue, 26 Aug 2014 13:46:17 +0000 (09:46 -0400)]
3147: Add RetryLoop to the Python SDK.

This provides a general-purpose mechanism for us to retry all kinds of
operations.

9 years ago3147: Move fake Python HTTP response generation to arvados_testutil.
Brett Smith [Thu, 21 Aug 2014 15:13:23 +0000 (11:13 -0400)]
3147: Move fake Python HTTP response generation to arvados_testutil.

Other tests can use this functionality.

9 years ago3136: Use map to correctly get the list of uuids. Check that there is a job
Peter Amstutz [Tue, 26 Aug 2014 15:25:01 +0000 (11:25 -0400)]
3136: Use map to correctly get the list of uuids.  Check that there is a job
record before trying to use it.

9 years agoFix test. refs #3149
Tom Clegg [Tue, 26 Aug 2014 15:24:32 +0000 (11:24 -0400)]
Fix test. refs #3149

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Tue, 26 Aug 2014 15:17:24 +0000 (11:17 -0400)]
Merge branch 'master' into 3112-report-bug

9 years agoFix migration and api templates that rely on changes that did not end up happening...
Tom Clegg [Tue, 26 Aug 2014 15:14:07 +0000 (11:14 -0400)]
Fix migration and api templates that rely on changes that did not end up happening. refs #3036

9 years agoMerge branch '3149-server-side-search' closes #3149
Tom Clegg [Tue, 26 Aug 2014 15:00:53 +0000 (11:00 -0400)]
Merge branch '3149-server-side-search' closes #3149

9 years ago3149: Merge branch 'master' into 3149-server-side-search
Tom Clegg [Tue, 26 Aug 2014 15:00:16 +0000 (11:00 -0400)]
3149: Merge branch 'master' into 3149-server-side-search

9 years agoSet up arvados env vars when running arv-normalize. No issue #
Tom Clegg [Tue, 26 Aug 2014 13:49:37 +0000 (09:49 -0400)]
Set up arvados env vars when running arv-normalize. No issue #

9 years agoMerge branch '3036-collection-uuids' closes #3036
Peter Amstutz [Tue, 26 Aug 2014 14:45:17 +0000 (10:45 -0400)]
Merge branch '3036-collection-uuids' closes #3036

9 years agoMerge branch 'master' into 3036-collection-uuids
Peter Amstutz [Tue, 26 Aug 2014 14:43:41 +0000 (10:43 -0400)]
Merge branch 'master' into 3036-collection-uuids

Conflicts:
services/api/test/fixtures/groups.yml

9 years ago3036: Fix merge conflicts. One python sdk test still fails.
Peter Amstutz [Tue, 26 Aug 2014 12:48:08 +0000 (08:48 -0400)]
3036: Fix merge conflicts.  One python sdk test still fails.

9 years agoMove styles out of tab partial. No issue #
Tom Clegg [Tue, 26 Aug 2014 05:41:53 +0000 (01:41 -0400)]
Move styles out of tab partial. No issue #

9 years agoPropagate query params to tab panes. No issue #
Tom Clegg [Tue, 26 Aug 2014 05:29:04 +0000 (01:29 -0400)]
Propagate query params to tab panes. No issue #

9 years agoRemove uuid-guessing code from "combine selected files". refs #3504
Tom Clegg [Tue, 26 Aug 2014 04:20:13 +0000 (00:20 -0400)]
Remove uuid-guessing code from "combine selected files". refs #3504

9 years agoDo not blow up in install stage when TASK_WORK is not set. No issue #
Tom Clegg [Tue, 26 Aug 2014 03:51:25 +0000 (23:51 -0400)]
Do not blow up in install stage when TASK_WORK is not set. No issue #

9 years agoDo not blow up when tmp directory already exists. No issue #
Tom Clegg [Tue, 26 Aug 2014 03:26:38 +0000 (23:26 -0400)]
Do not blow up when tmp directory already exists. No issue #

9 years ago3112: alert left justification
radhika [Tue, 26 Aug 2014 03:12:55 +0000 (23:12 -0400)]
3112: alert left justification

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Tue, 26 Aug 2014 03:09:37 +0000 (23:09 -0400)]
Merge branch 'master' into 3112-report-bug

9 years ago3149: Clarify comments. Stick with a-b-c data keys where possible;
Tom Clegg [Tue, 26 Aug 2014 02:29:11 +0000 (22:29 -0400)]
3149: Clarify comments. Stick with a-b-c data keys where possible;
when not possible, explain why not.

9 years agoMerge branch '3149-filter-any' refs #3149
Tom Clegg [Tue, 26 Aug 2014 01:50:41 +0000 (21:50 -0400)]
Merge branch '3149-filter-any' refs #3149

9 years ago3149: Explain what "any" does as a filter attribute.
Tom Clegg [Tue, 26 Aug 2014 01:48:47 +0000 (21:48 -0400)]
3149: Explain what "any" does as a filter attribute.

9 years agoFix test fixtures breaking Workbench tests. refs #3171
Tom Clegg [Tue, 26 Aug 2014 01:33:57 +0000 (21:33 -0400)]
Fix test fixtures breaking Workbench tests. refs #3171

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Tue, 26 Aug 2014 01:26:43 +0000 (21:26 -0400)]
Merge branch 'master' into 3112-report-bug

9 years agoDo not blow up when stdout!=subprocess.PIPE. no issue #
Tom Clegg [Tue, 26 Aug 2014 00:59:37 +0000 (20:59 -0400)]
Do not blow up when stdout!=subprocess.PIPE. no issue #

9 years agoMerge branch '3660-project-editable' closes #3660
Tom Clegg [Tue, 26 Aug 2014 00:41:43 +0000 (20:41 -0400)]
Merge branch '3660-project-editable' closes #3660

9 years ago3660: Clarify self-contradicting comment.
Tom Clegg [Tue, 26 Aug 2014 00:41:23 +0000 (20:41 -0400)]
3660: Clarify self-contradicting comment.

9 years agoUpdate Gemfile.lock. refs #3405
Tom Clegg [Tue, 26 Aug 2014 00:34:00 +0000 (20:34 -0400)]
Update Gemfile.lock. refs #3405

9 years agoMerge branch '3171-admin-groups' closes #3171
Tom Clegg [Tue, 26 Aug 2014 00:24:56 +0000 (20:24 -0400)]
Merge branch '3171-admin-groups' closes #3171

9 years agoInstead of munging TASK_WORK var, mkdir -p it (and therefore JOB_WORK)
Tom Clegg [Tue, 26 Aug 2014 00:24:12 +0000 (20:24 -0400)]
Instead of munging TASK_WORK var, mkdir -p it (and therefore JOB_WORK)
in setup script.

Without this, scripts that write to arvados.current_job().tmpdir
(i.e., JOB_WORK) fail.

No issue #

9 years ago3112: move manage account testing into its own file
radhika [Mon, 25 Aug 2014 23:19:41 +0000 (19:19 -0400)]
3112: move manage account testing into its own file

9 years ago3112: update issue report routes config and some other minor test updates.
radhika [Mon, 25 Aug 2014 21:20:51 +0000 (17:20 -0400)]
3112: update issue report routes config and some other minor test updates.

9 years agoDo not blow up with pipeline has a plain value in a script_parameter. No issue #
Tom Clegg [Mon, 25 Aug 2014 20:53:02 +0000 (16:53 -0400)]
Do not blow up with pipeline has a plain value in a script_parameter. No issue #

9 years ago3112: fix indentation
radhika [Mon, 25 Aug 2014 20:52:39 +0000 (16:52 -0400)]
3112: fix indentation

9 years ago3112: add some space below the submit button and alert panel
radhika [Mon, 25 Aug 2014 20:43:58 +0000 (16:43 -0400)]
3112: add some space below the submit button and alert panel

9 years agoMerge branch 'master' into 3036-collection-uuids
Peter Amstutz [Mon, 25 Aug 2014 20:29:32 +0000 (16:29 -0400)]
Merge branch 'master' into 3036-collection-uuids

Conflicts:
sdk/python/arvados/commands/put.py
services/api/app/controllers/application_controller.rb
services/api/app/controllers/arvados/v1/collections_controller.rb
services/api/app/models/arvados_model.rb
services/api/test/fixtures/groups.yml
services/api/test/fixtures/links.yml

9 years ago3112: minor cleanup
radhika [Mon, 25 Aug 2014 20:25:58 +0000 (16:25 -0400)]
3112: minor cleanup

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Mon, 25 Aug 2014 18:36:55 +0000 (14:36 -0400)]
Merge branch 'master' into 3112-report-bug

9 years agoMerge branch '3171-group-membership' refs #3171
Tom Clegg [Mon, 25 Aug 2014 18:16:11 +0000 (14:16 -0400)]
Merge branch '3171-group-membership' refs #3171

9 years ago3171: Merge branch 'master' into 3171-group-membership
Tom Clegg [Mon, 25 Aug 2014 18:15:57 +0000 (14:15 -0400)]
3171: Merge branch 'master' into 3171-group-membership

Conflicts:
services/api/test/fixtures/links.yml

9 years ago3171: Fix wording, update docs.
Tom Clegg [Mon, 25 Aug 2014 18:12:37 +0000 (14:12 -0400)]
3171: Fix wording, update docs.

9 years agoMerge branch '3448-keep-put-timestamps'
Tim Pierce [Mon, 25 Aug 2014 17:31:01 +0000 (13:31 -0400)]
Merge branch '3448-keep-put-timestamps'

Closes #3448.

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Mon, 25 Aug 2014 17:29:39 +0000 (13:29 -0400)]
Merge branch 'master' into 3112-report-bug

9 years ago3112: minor update in application layout test
radhika [Mon, 25 Aug 2014 16:09:41 +0000 (12:09 -0400)]
3112: minor update in application layout test

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Mon, 25 Aug 2014 16:04:20 +0000 (12:04 -0400)]
Merge branch 'master' into 3112-report-bug

9 years ago3112: Move profile testing out of application_layout_test.rb into it's own file for...
radhika [Mon, 25 Aug 2014 16:02:57 +0000 (12:02 -0400)]
3112: Move profile testing out of application_layout_test.rb into it's own file for better testability.

9 years agoDo not blow up in crunch-dispatch.rb: do not pass --jobs and --pipelines
Ward Vandewege [Mon, 25 Aug 2014 15:39:05 +0000 (11:39 -0400)]
Do not blow up in crunch-dispatch.rb: do not pass --jobs and --pipelines
arguments to Rails.

no issue #

9 years agoDo not blow up in crunch-dispatch: fix syntax error. Ouch.
Ward Vandewege [Mon, 25 Aug 2014 15:29:53 +0000 (11:29 -0400)]
Do not blow up in crunch-dispatch: fix syntax error. Ouch.

no issue #

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Mon, 25 Aug 2014 15:13:51 +0000 (11:13 -0400)]
Merge branch 'master' into 3112-report-bug

9 years ago3448: update tests with "untouchable" volumes
Tim Pierce [Mon, 25 Aug 2014 14:40:28 +0000 (10:40 -0400)]
3448: update tests with "untouchable" volumes

Added a "Touchable" flag to MockVolume, so that we can test that
PutBlock does the right thing when Touch fails.  Previous code was using
volume.Bad as an attempt to test this, but that short-circuited the Put
request before it ever attempted to call Touch.

Added TODOs with more testing improvements we can make as time permits.

9 years agoMerge branch 'multiple-dispatch' no issue #
Tom Clegg [Mon, 25 Aug 2014 14:16:27 +0000 (10:16 -0400)]
Merge branch 'multiple-dispatch' no issue #

9 years agocrunch-dispatch can run --jobs, --pipelines, or both.
Tom Clegg [Mon, 25 Aug 2014 14:05:14 +0000 (10:05 -0400)]
crunch-dispatch can run --jobs, --pipelines, or both.

9 years ago3136: Fetch actual job objects for use in rendering pipeline jobs.
Peter Amstutz [Mon, 25 Aug 2014 13:23:34 +0000 (09:23 -0400)]
3136: Fetch actual job objects for use in rendering pipeline jobs.

9 years agoWith new apiserver, after upload, arv-put prints portable data hash instead of
Peter Amstutz [Mon, 25 Aug 2014 12:51:47 +0000 (08:51 -0400)]
With new apiserver, after upload, arv-put prints portable data hash instead of
collection uuid for compatibility with crunch.  refs #3504

9 years ago3149: Propagate filters from remote->dialog->infinite. Fix tests.
Tom Clegg [Mon, 25 Aug 2014 03:43:53 +0000 (23:43 -0400)]
3149: Propagate filters from remote->dialog->infinite. Fix tests.

9 years ago3149: Do not blow up on small devices/windows.
Tom Clegg [Mon, 25 Aug 2014 02:40:09 +0000 (22:40 -0400)]
3149: Do not blow up on small devices/windows.

9 years ago3149: Do not preload results in search dialog. Let infinite scroll do it.
Tom Clegg [Mon, 25 Aug 2014 02:23:43 +0000 (22:23 -0400)]
3149: Do not preload results in search dialog. Let infinite scroll do it.

9 years ago3149: Fix infinite scroll not updating after retry/refresh.
Tom Clegg [Mon, 25 Aug 2014 02:09:42 +0000 (22:09 -0400)]
3149: Fix infinite scroll not updating after retry/refresh.

9 years ago3149: Fix user-controlled filters overwriting page-controlled filters.
Tom Clegg [Mon, 25 Aug 2014 01:36:40 +0000 (21:36 -0400)]
3149: Fix user-controlled filters overwriting page-controlled filters.

9 years ago3149: Let Workbench server do all the filtering where infinite-scroll facilities...
Tom Clegg [Sun, 24 Aug 2014 23:58:54 +0000 (19:58 -0400)]
3149: Let Workbench server do all the filtering where infinite-scroll facilities exist.

9 years ago3149: Propagate search string to Workbench server using filters param.
Tom Clegg [Sun, 24 Aug 2014 22:46:29 +0000 (18:46 -0400)]
3149: Propagate search string to Workbench server using filters param.

9 years ago3149: Untabify.
Tom Clegg [Sun, 24 Aug 2014 21:22:50 +0000 (17:22 -0400)]
3149: Untabify.

9 years ago3149: Fix operator precedence in SQL statements built from record_filters.
Tom Clegg [Mon, 25 Aug 2014 01:50:22 +0000 (21:50 -0400)]
3149: Fix operator precedence in SQL statements built from record_filters.

9 years ago3149: Support "ilike" operator in record_filters.
Tom Clegg [Sun, 24 Aug 2014 23:48:28 +0000 (19:48 -0400)]
3149: Support "ilike" operator in record_filters.

9 years ago3149: Support "any" and array in filter "column" element.
Tom Clegg [Sun, 24 Aug 2014 22:48:48 +0000 (18:48 -0400)]
3149: Support "any" and array in filter "column" element.

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Sun, 24 Aug 2014 22:55:51 +0000 (18:55 -0400)]
Merge branch 'master' into 3112-report-bug

Conflicts:
services/api/config/application.default.yml

9 years agocloses #3153
radhika [Sun, 24 Aug 2014 22:07:07 +0000 (18:07 -0400)]
closes #3153
Merge branch '3153-auto-setup-user'

9 years ago3153: update the newly added vm login link to not point to the "active" user
radhika [Sun, 24 Aug 2014 22:06:10 +0000 (18:06 -0400)]
3153: update the newly added vm login link to not point to the "active" user

9 years agocloses #3153
radhika [Sun, 24 Aug 2014 21:15:09 +0000 (17:15 -0400)]
closes #3153
Merge branch '3153-auto-setup-user'

9 years agoMerge branch 'master' into 3153-auto-setup-user
radhika [Sun, 24 Aug 2014 21:14:32 +0000 (17:14 -0400)]
Merge branch 'master' into 3153-auto-setup-user

9 years agoFix user agreements page when no signatures needed. Add tests. No issue #
Tom Clegg [Sun, 24 Aug 2014 20:05:15 +0000 (16:05 -0400)]
Fix user agreements page when no signatures needed. Add tests. No issue #

9 years agoFix disabled Continue button on user agreements page. No issue #
Tom Clegg [Sun, 24 Aug 2014 18:35:02 +0000 (14:35 -0400)]
Fix disabled Continue button on user agreements page. No issue #

9 years ago3112: trailing white space
radhika [Sun, 24 Aug 2014 12:31:54 +0000 (08:31 -0400)]
3112: trailing white space

9 years ago3112: report issue success event handling working in 404 error page.
radhika [Sun, 24 Aug 2014 12:11:13 +0000 (08:11 -0400)]
3112: report issue success event handling working in 404 error page.

9 years ago3112: update report_issue.js to confine event handling to report issue. WIP: mostly...
radhika [Sun, 24 Aug 2014 04:12:44 +0000 (00:12 -0400)]
3112: update report_issue.js to confine event handling to report issue. WIP: mostly working, except from the 404 error page.

9 years ago3660: Show add/run buttons if project is writable.
Tom Clegg [Sun, 24 Aug 2014 01:14:23 +0000 (21:14 -0400)]
3660: Show add/run buttons if project is writable.

Hide move/delete buttons if move is impossible.

9 years ago3171: Add administrator UI for toggling user<->role permissions.
Tom Clegg [Sun, 24 Aug 2014 00:00:59 +0000 (20:00 -0400)]
3171: Add administrator UI for toggling user<->role permissions.

9 years agoMerge branch 'master' into 3153-auto-setup-user
radhika [Sat, 23 Aug 2014 22:22:19 +0000 (18:22 -0400)]
Merge branch 'master' into 3153-auto-setup-user

9 years ago3153: minor test updates: rename the variable "active_recipients" as "new_user_recipi...
radhika [Sat, 23 Aug 2014 19:32:02 +0000 (15:32 -0400)]
3153: minor test updates: rename the variable "active_recipients" as "new_user_recipients" to ensure test readability.

9 years ago3153: update tests to look for new user created message also when an inactive user...
radhika [Sat, 23 Aug 2014 19:17:15 +0000 (15:17 -0400)]
3153: update tests to look for new user created message also when an inactive user is being created.

9 years ago3153: when new_users_are_active config param is set, even blacklisted users will...
radhika [Sat, 23 Aug 2014 17:19:39 +0000 (13:19 -0400)]
3153: when new_users_are_active config param is set, even blacklisted users will be "active", and hence the email notification would say the user is setup when auto_setup_new_users is set.

9 years agoMerge branch '3153-auto-setup-tests' into 3153-auto-setup-user
radhika [Sat, 23 Aug 2014 15:07:57 +0000 (11:07 -0400)]
Merge branch '3153-auto-setup-tests' into 3153-auto-setup-user

9 years ago3153: change variable name in test from valid_username to ok_to_auto_setup
radhika [Sat, 23 Aug 2014 15:00:29 +0000 (11:00 -0400)]
3153: change variable name in test from valid_username to ok_to_auto_setup

9 years ago3153: directly invoke setup method during auto-setup
radhika [Sat, 23 Aug 2014 14:50:43 +0000 (10:50 -0400)]
3153: directly invoke setup method during auto-setup

9 years ago3153: Add integration tests.
Tom Clegg [Sat, 23 Aug 2014 02:46:53 +0000 (22:46 -0400)]
3153: Add integration tests.

9 years agoAccomodate otherwise valid user-supplied portable data hashes with no size
Peter Amstutz [Fri, 22 Aug 2014 20:51:10 +0000 (16:51 -0400)]
Accomodate otherwise valid user-supplied portable data hashes with no size
hint, as provided by crunch.

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Fri, 22 Aug 2014 20:22:32 +0000 (16:22 -0400)]
Merge branch 'master' into 3112-report-bug

9 years agoMerge branch 'master' into 3036-collection-uuids
Peter Amstutz [Fri, 22 Aug 2014 20:14:03 +0000 (16:14 -0400)]
Merge branch 'master' into 3036-collection-uuids

9 years agoReject empty fields in job creation filters. no issue #
Peter Amstutz [Fri, 22 Aug 2014 20:10:42 +0000 (16:10 -0400)]
Reject empty fields in job creation filters. no issue #

9 years agoMerge branch 'master' into 3112-report-bug
radhika [Fri, 22 Aug 2014 20:09:32 +0000 (16:09 -0400)]
Merge branch 'master' into 3112-report-bug