arvados.git
9 years agorefs #4156
radhika [Fri, 21 Nov 2014 20:03:05 +0000 (15:03 -0500)]
refs #4156
Merge branch '4156-cli-tests'

9 years agoMerge branch 'master' into 4156-cli-tests
radhika [Fri, 21 Nov 2014 19:50:58 +0000 (14:50 -0500)]
Merge branch 'master' into 4156-cli-tests

9 years ago4156: uncomment one of the asserts
radhika [Fri, 21 Nov 2014 19:50:25 +0000 (14:50 -0500)]
4156: uncomment one of the asserts

9 years agocloses #4641
radhika [Fri, 21 Nov 2014 19:21:14 +0000 (14:21 -0500)]
closes #4641
Merge branch '4641-make-jenkins-tests-pass'

9 years ago4641: click on confirm dialog OK button in sharing test on Revoke action.
radhika [Fri, 21 Nov 2014 18:20:33 +0000 (13:20 -0500)]
4641: click on confirm dialog OK button in sharing test on Revoke action.

9 years ago4641: use selenium driver and bigger page width.
radhika [Fri, 21 Nov 2014 16:32:55 +0000 (11:32 -0500)]
4641: use selenium driver and bigger page width.

9 years agoMerge branch 'master' into 4156-cli-tests
radhika [Fri, 21 Nov 2014 13:52:15 +0000 (08:52 -0500)]
Merge branch 'master' into 4156-cli-tests

9 years ago4156: 3 more tests needed to be skipped.
radhika [Fri, 21 Nov 2014 13:51:37 +0000 (08:51 -0500)]
4156: 3 more tests needed to be skipped.

9 years agoMerge branch '4400-python-install-herring' refs #4400
Tom Clegg [Thu, 20 Nov 2014 21:56:05 +0000 (16:56 -0500)]
Merge branch '4400-python-install-herring' refs #4400

9 years agoMerge branch '4595-document-arv-filters'
Tim Pierce [Thu, 20 Nov 2014 21:39:33 +0000 (16:39 -0500)]
Merge branch '4595-document-arv-filters'

Refs #4595.

9 years agoReorganize the arv documentation a bit more, putting it all in one place.
Ward Vandewege [Thu, 20 Nov 2014 21:35:04 +0000 (16:35 -0500)]
Reorganize the arv documentation a bit more, putting it all in one place.

refs #4595

9 years ago4400: Fix whitespace. Fix tagging in nodemanager, too.
Tom Clegg [Thu, 20 Nov 2014 21:33:49 +0000 (16:33 -0500)]
4400: Fix whitespace. Fix tagging in nodemanager, too.

9 years agoRemove spurious empty line
Ward Vandewege [Thu, 20 Nov 2014 20:47:45 +0000 (15:47 -0500)]
Remove spurious empty line

refs #4595

9 years ago4595: add documentation for list --filters
Tim Pierce [Thu, 20 Nov 2014 20:38:14 +0000 (15:38 -0500)]
4595: add documentation for list --filters

9 years agoMerge branch 'master' into 4156-cli-tests
radhika [Thu, 20 Nov 2014 19:08:56 +0000 (14:08 -0500)]
Merge branch 'master' into 4156-cli-tests

9 years agocloses #4592
radhika [Thu, 20 Nov 2014 18:57:58 +0000 (13:57 -0500)]
closes #4592
Merge branch '4592-input-selection'

9 years ago4592: update fixture checksum
radhika [Thu, 20 Nov 2014 18:48:44 +0000 (13:48 -0500)]
4592: update fixture checksum

9 years ago4156: skip all the tests that require api server until #4534 is completed.
radhika [Thu, 20 Nov 2014 18:27:55 +0000 (13:27 -0500)]
4156: skip all the tests that require api server until #4534 is completed.

9 years agoMerge branch 'master' into 4156-cli-tests
radhika [Thu, 20 Nov 2014 17:36:07 +0000 (12:36 -0500)]
Merge branch 'master' into 4156-cli-tests

9 years ago4592: add fixture to be used by the api server test "search collections with 'any...
radhika [Thu, 20 Nov 2014 17:29:54 +0000 (12:29 -0500)]
4592: add fixture to be used by the api server test "search collections with 'any' operator".

9 years agoFix wrong variable assigned. refs #3824
Tom Clegg [Thu, 20 Nov 2014 17:04:48 +0000 (12:04 -0500)]
Fix wrong variable assigned. refs #3824

9 years agoFix syntax error in whitespace. refs #3824
Tom Clegg [Thu, 20 Nov 2014 17:02:57 +0000 (12:02 -0500)]
Fix syntax error in whitespace. refs #3824

9 years agoMerge branch 'master' into 4592-input-selection
radhika [Thu, 20 Nov 2014 16:59:29 +0000 (11:59 -0500)]
Merge branch 'master' into 4592-input-selection

9 years agoMerge branch 'master' into 4592-input-selection
radhika [Thu, 20 Nov 2014 16:46:41 +0000 (11:46 -0500)]
Merge branch 'master' into 4592-input-selection

9 years agoMerge branch '4027-api-sdk-requires-docker-wip'
Brett Smith [Thu, 20 Nov 2014 16:25:21 +0000 (11:25 -0500)]
Merge branch '4027-api-sdk-requires-docker-wip'

Refs #4027.  Closes #4626, #4629.

9 years ago4027: API Jobs that specify SDK version must also use Docker.
Brett Smith [Thu, 20 Nov 2014 14:52:53 +0000 (09:52 -0500)]
4027: API Jobs that specify SDK version must also use Docker.

Because compute nodes will be upgraded regularly, we don't want to
guarantee that we'll have the necessary tools to run older SDK
versions.  The primary motivation for this feature is to install SDKs
into Docker images, so we require that to be specified.

This commit removes a few `job.valid?` assertions from the job unit
tests.  These are redundant when they come after `Job.create!` because
that will raise an exception if the job isn't valid.

9 years agoMerge branch 'master' into 4592-input-selection
radhika [Thu, 20 Nov 2014 16:23:09 +0000 (11:23 -0500)]
Merge branch 'master' into 4592-input-selection

9 years agoMerge branch 'master' into 4156-cli-tests
radhika [Thu, 20 Nov 2014 16:20:50 +0000 (11:20 -0500)]
Merge branch 'master' into 4156-cli-tests

9 years ago4400: Do not add ".commitdate.hash" tag if a build tag is already set.
Tom Clegg [Thu, 20 Nov 2014 15:59:47 +0000 (10:59 -0500)]
4400: Do not add ".commitdate.hash" tag if a build tag is already set.

9 years agoMerge branch '3824-docker-fixes' refs #3824 refs #4186
Tom Clegg [Thu, 20 Nov 2014 15:41:00 +0000 (10:41 -0500)]
Merge branch '3824-docker-fixes' refs #3824 refs #4186

9 years ago3824: Merge branch 'master' into 3824-docker-fixes
Tom Clegg [Thu, 20 Nov 2014 15:38:27 +0000 (10:38 -0500)]
3824: Merge branch 'master' into 3824-docker-fixes

9 years agoA few wording tweaks.
Ward Vandewege [Thu, 20 Nov 2014 15:32:24 +0000 (10:32 -0500)]
A few wording tweaks.

refs #3824

9 years ago4592: add test where a collection with no name is selected as input to a pipeline...
radhika [Thu, 20 Nov 2014 05:20:49 +0000 (00:20 -0500)]
4592: add test where a collection with no name is selected as input to a pipeline instance.

9 years ago4592: Fix the nil error when a collection without a name is selected as input.
radhika [Thu, 20 Nov 2014 02:05:16 +0000 (21:05 -0500)]
4592: Fix the nil error when a collection without a name is selected as input.
Also refactor the pipeline instances integration test to break re-run instance test into its own test.

9 years agoMerge branch 'master' into 4156-cli-tests
radhika [Wed, 19 Nov 2014 19:24:53 +0000 (14:24 -0500)]
Merge branch 'master' into 4156-cli-tests

9 years ago4156: skip arv-tag tests while arv-tag is being worked on.
radhika [Wed, 19 Nov 2014 19:23:11 +0000 (14:23 -0500)]
4156: skip arv-tag tests while arv-tag is being worked on.

9 years agoMerge branch '3382-always-show-inputs' (closes #3382)
Phil Hodgson [Wed, 19 Nov 2014 19:15:34 +0000 (20:15 +0100)]
Merge branch '3382-always-show-inputs' (closes #3382)

9 years agoMerge branch 'master' into 3382-always-show-inputs
Phil Hodgson [Wed, 19 Nov 2014 18:50:19 +0000 (19:50 +0100)]
Merge branch 'master' into 3382-always-show-inputs

9 years agoMerge branch 'master' into 4156-cli-tests
radhika [Wed, 19 Nov 2014 16:25:04 +0000 (11:25 -0500)]
Merge branch 'master' into 4156-cli-tests

9 years agocloses #4250
radhika [Wed, 19 Nov 2014 16:19:27 +0000 (11:19 -0500)]
closes #4250
Merge branch '4250-doc-updates'

9 years ago4250: keep doc update
radhika [Wed, 19 Nov 2014 14:00:05 +0000 (09:00 -0500)]
4250: keep doc update

9 years ago3382: test that after editing that an input is editable a second time
Phil Hodgson [Wed, 19 Nov 2014 09:15:45 +0000 (10:15 +0100)]
3382: test that after editing that an input is editable a second time
  - reverted from commit 7bd04ed26901e34e3e5788093bee12be4406dd7b and then adjusted according to latest code review

9 years ago4156: little cleanup
radhika [Tue, 18 Nov 2014 22:43:35 +0000 (17:43 -0500)]
4156: little cleanup

9 years agoMerge branch 'master' into 4250-doc-updates
radhika [Tue, 18 Nov 2014 22:28:55 +0000 (17:28 -0500)]
Merge branch 'master' into 4250-doc-updates

9 years agoMerge branch 'master' into 4156-cli-tests
radhika [Tue, 18 Nov 2014 22:28:38 +0000 (17:28 -0500)]
Merge branch 'master' into 4156-cli-tests

9 years ago4156: update tests to match current impl
radhika [Tue, 18 Nov 2014 22:27:49 +0000 (17:27 -0500)]
4156: update tests to match current impl

9 years ago4156: minor updates
radhika [Tue, 18 Nov 2014 21:38:07 +0000 (16:38 -0500)]
4156: minor updates

9 years agoMerge branch '4380-node-manager-slurm-drain-wip'
Brett Smith [Tue, 18 Nov 2014 20:04:13 +0000 (15:04 -0500)]
Merge branch '4380-node-manager-slurm-drain-wip'

Closes #4380, #4519.

9 years ago4380: Add SLURM dispatcher to Node Manager.
Brett Smith [Thu, 13 Nov 2014 20:34:54 +0000 (15:34 -0500)]
4380: Add SLURM dispatcher to Node Manager.

9 years ago4380: Fix retry scheduling for Node Manager change methods.
Brett Smith [Thu, 13 Nov 2014 20:44:19 +0000 (15:44 -0500)]
4380: Fix retry scheduling for Node Manager change methods.

9 years ago4380: Node Manager shutdown actor is more robust.
Brett Smith [Thu, 13 Nov 2014 17:58:14 +0000 (12:58 -0500)]
4380: Node Manager shutdown actor is more robust.

ComputeNodeShutdownActor now checks that destroying the cloud node
succeeds.  Before retrying, it will check if the node is still
eligible for shutdown, and abort if not.

9 years ago4380: Node Manager monitors respond to shutdown_eligible message.
Brett Smith [Thu, 13 Nov 2014 14:47:07 +0000 (09:47 -0500)]
4380: Node Manager monitors respond to shutdown_eligible message.

9 years ago4156: update test to expect uuid instead of pdh
radhika [Tue, 18 Nov 2014 19:49:07 +0000 (14:49 -0500)]
4156: update test to expect uuid instead of pdh

9 years ago4250: update pdh to uuid in keep tutorial
radhika [Tue, 18 Nov 2014 19:34:57 +0000 (14:34 -0500)]
4250: update pdh to uuid in keep tutorial

9 years agoMerge branch 'master' into 4250-doc-updates
radhika [Tue, 18 Nov 2014 19:16:54 +0000 (14:16 -0500)]
Merge branch 'master' into 4250-doc-updates

9 years agoMerge branch 'master' into 4156-cli-tests
radhika [Tue, 18 Nov 2014 19:14:44 +0000 (14:14 -0500)]
Merge branch 'master' into 4156-cli-tests

9 years agorefs #4194
radhika [Tue, 18 Nov 2014 19:14:06 +0000 (14:14 -0500)]
refs #4194
Merge branch '4194-keep-logging'

9 years agoMerge branch '4552-collection-unique-name' closes #4552
Tom Clegg [Tue, 18 Nov 2014 19:16:09 +0000 (14:16 -0500)]
Merge branch '4552-collection-unique-name' closes #4552

Conflicts:
services/api/app/models/collection.rb

9 years agoMerge branch 'master' into 4194-keep-logging
radhika [Tue, 18 Nov 2014 19:13:08 +0000 (14:13 -0500)]
Merge branch 'master' into 4194-keep-logging

9 years ago4156: update failing tests in test_arv-put that were expecting pdh instead of uuid.
radhika [Tue, 18 Nov 2014 19:05:22 +0000 (14:05 -0500)]
4156: update failing tests in test_arv-put that were expecting pdh instead of uuid.

9 years agoMerge branch 'master' into 4194-keep-logging
radhika [Tue, 18 Nov 2014 18:53:15 +0000 (13:53 -0500)]
Merge branch 'master' into 4194-keep-logging

9 years ago4194: use same log statement for successes as well as errors.
radhika [Tue, 18 Nov 2014 18:49:31 +0000 (13:49 -0500)]
4194: use same log statement for successes as well as errors.

9 years ago4552: Set permit_unsigned_manifests=false needed for test.
Tom Clegg [Tue, 18 Nov 2014 18:40:32 +0000 (13:40 -0500)]
4552: Set permit_unsigned_manifests=false needed for test.

9 years agoMerge branch '4363-less-filename-munging' closes #4363
Tom Clegg [Tue, 18 Nov 2014 18:31:11 +0000 (13:31 -0500)]
Merge branch '4363-less-filename-munging' closes #4363

9 years ago4363: Fix flaky test case (race with filterable.js debounce timer).
Tom Clegg [Tue, 18 Nov 2014 17:39:50 +0000 (12:39 -0500)]
4363: Fix flaky test case (race with filterable.js debounce timer).

9 years ago4194: use go fmt to replace spaces with tabs.
radhika [Tue, 18 Nov 2014 17:37:22 +0000 (12:37 -0500)]
4194: use go fmt to replace spaces with tabs.

9 years ago4194: just print data size and never the data
radhika [Tue, 18 Nov 2014 17:29:33 +0000 (12:29 -0500)]
4194: just print data size and never the data

9 years ago4363: Fix size hints for multi-byte manifests (backported from f78caf9).
Tom Clegg [Tue, 18 Nov 2014 16:33:15 +0000 (11:33 -0500)]
4363: Fix size hints for multi-byte manifests (backported from f78caf9).

9 years ago4363: Accept manifest_text in a non-UTF-8 encoding that is equal to its UTF-8 encoding.
Tom Clegg [Tue, 18 Nov 2014 16:24:58 +0000 (11:24 -0500)]
4363: Accept manifest_text in a non-UTF-8 encoding that is equal to its UTF-8 encoding.

9 years ago4363: Specify ASCII encoding in test case.
Tom Clegg [Tue, 18 Nov 2014 15:58:19 +0000 (10:58 -0500)]
4363: Specify ASCII encoding in test case.

9 years agocloses #4194
radhika [Tue, 18 Nov 2014 15:11:23 +0000 (10:11 -0500)]
closes #4194
Merge branch '4194-keep-logging'

9 years agoMerge branch 'master' into 4194-keep-logging
radhika [Tue, 18 Nov 2014 15:08:14 +0000 (10:08 -0500)]
Merge branch 'master' into 4194-keep-logging

9 years agoMerge branch '4027-sdk-constraint-reuse-wip'
Brett Smith [Tue, 18 Nov 2014 14:21:24 +0000 (09:21 -0500)]
Merge branch '4027-sdk-constraint-reuse-wip'

Refs #4027.  Closes #4532.

9 years ago4027: Test updating job's SDK version after it's already set.
Brett Smith [Mon, 17 Nov 2014 22:31:12 +0000 (17:31 -0500)]
4027: Test updating job's SDK version after it's already set.

9 years ago4027: API server considers arvados_sdk_version for Job reuse.
Brett Smith [Fri, 14 Nov 2014 18:57:33 +0000 (13:57 -0500)]
4027: API server considers arvados_sdk_version for Job reuse.

* Extend "in git" and "not in git" filters to the arvados_sdk_version
  column.
* When no filters are specified, if the submitted job specifies an
  arvados_sdk_version constraint, require reuse candidates to meet it.
* Document all this.

9 years ago4363: Merge branch 'master' into 4363-less-filename-munging
Tom Clegg [Tue, 18 Nov 2014 08:32:11 +0000 (03:32 -0500)]
4363: Merge branch 'master' into 4363-less-filename-munging

9 years ago4363: Explicit UTF-8 for test string.
Tom Clegg [Tue, 18 Nov 2014 08:31:19 +0000 (03:31 -0500)]
4363: Explicit UTF-8 for test string.

9 years ago4363: Validate utf-8 encoding of manifest_text.
Tom Clegg [Mon, 17 Nov 2014 16:01:49 +0000 (11:01 -0500)]
4363: Validate utf-8 encoding of manifest_text.

9 years ago4363: Remove redundant test.
Tom Clegg [Thu, 13 Nov 2014 19:54:29 +0000 (14:54 -0500)]
4363: Remove redundant test.

9 years ago4400: Silence git error messages during package install (we ignore them anyway)
Tom Clegg [Tue, 18 Nov 2014 07:36:58 +0000 (02:36 -0500)]
4400: Silence git error messages during package install (we ignore them anyway)

9 years ago4552: Tidy up ensure_unique_name block.
Tom Clegg [Mon, 17 Nov 2014 20:17:59 +0000 (15:17 -0500)]
4552: Tidy up ensure_unique_name block.

9 years ago4552: Use faster database_cleaner strategy.
Tom Clegg [Mon, 17 Nov 2014 18:57:51 +0000 (13:57 -0500)]
4552: Use faster database_cleaner strategy.

9 years ago4552: Fix conflict between ensure_unique_name and signed manifests.
Tom Clegg [Mon, 17 Nov 2014 18:48:30 +0000 (13:48 -0500)]
4552: Fix conflict between ensure_unique_name and signed manifests.

9 years ago4194: rename wrapper as logging_router
radhika [Tue, 18 Nov 2014 03:11:17 +0000 (22:11 -0500)]
4194: rename wrapper as logging_router

9 years agoMerge branch 'master' into 4194-keep-logging
radhika [Mon, 17 Nov 2014 22:27:30 +0000 (17:27 -0500)]
Merge branch 'master' into 4194-keep-logging

9 years ago4194: MakeLoggingRESTRouter returns a pointer rather than the struct.
radhika [Mon, 17 Nov 2014 22:26:39 +0000 (17:26 -0500)]
4194: MakeLoggingRESTRouter returns a pointer rather than the struct.

9 years ago4194: rename wrapper
radhika [Mon, 17 Nov 2014 22:13:03 +0000 (17:13 -0500)]
4194: rename wrapper

9 years agoBe a bit smarter about handling the dynamic dns resolver records for
Ward Vandewege [Mon, 17 Nov 2014 22:09:54 +0000 (17:09 -0500)]
Be a bit smarter about handling the dynamic dns resolver records for
compute nodes on api server startup.

refs #4461

9 years ago4194: rename RESTRouterWrapper as LoggingRESTRouter
radhika [Mon, 17 Nov 2014 22:02:00 +0000 (17:02 -0500)]
4194: rename RESTRouterWrapper as LoggingRESTRouter

9 years agoMerge branch 'master' into 4194-keep-logging
radhika [Mon, 17 Nov 2014 21:53:33 +0000 (16:53 -0500)]
Merge branch 'master' into 4194-keep-logging

9 years ago4250: update user guide to reflect current code.
radhika [Mon, 17 Nov 2014 21:42:12 +0000 (16:42 -0500)]
4250: update user guide to reflect current code.

9 years ago3382: test that after editing that an input is editable a second time
Phil Hodgson [Mon, 17 Nov 2014 17:40:16 +0000 (18:40 +0100)]
3382: test that after editing that an input is editable a second time

9 years agocloses #4024
radhika [Mon, 17 Nov 2014 17:35:22 +0000 (12:35 -0500)]
closes #4024
Merge branch '4024-pipeline-instances-scroll'

9 years ago3382: test that an input without a description is still displayed after it has been...
Phil Hodgson [Mon, 17 Nov 2014 17:18:48 +0000 (18:18 +0100)]
3382: test that an input without a description is still displayed after it has been specified

9 years agoMerge branch 'master' into 3382-always-show-inputs
Phil Hodgson [Mon, 17 Nov 2014 17:16:06 +0000 (18:16 +0100)]
Merge branch 'master' into 3382-always-show-inputs

9 years agoMerge branch '4024-pipeline-instances-scroll' of git.curoverse.com:arvados into 4024...
radhika [Mon, 17 Nov 2014 17:02:52 +0000 (12:02 -0500)]
Merge branch '4024-pipeline-instances-scroll' of git.curoverse.com:arvados into 4024-pipeline-instances-scroll

9 years ago4024: Make items_available, result_limit, and result_offset work for empty result...
Tom Clegg [Mon, 17 Nov 2014 16:46:30 +0000 (11:46 -0500)]
4024: Make items_available, result_limit, and result_offset work for empty result sets.

9 years agoMerge branch '3824-task-work' closes #3824
Tom Clegg [Mon, 17 Nov 2014 16:05:14 +0000 (11:05 -0500)]
Merge branch '3824-task-work' closes #3824

9 years ago3824: Check whether there is anything to install before trying to lock $destdir.
Tom Clegg [Mon, 17 Nov 2014 15:55:59 +0000 (10:55 -0500)]
3824: Check whether there is anything to install before trying to lock $destdir.

9 years agoMerge branch '4535-configure-api-host-url' closes #4535
Peter Amstutz [Mon, 17 Nov 2014 15:51:17 +0000 (10:51 -0500)]
Merge branch '4535-configure-api-host-url' closes #4535