arvados.git
5 years agoMerge branch '13198-keep-web-metrics'
Tom Clegg [Thu, 19 Jul 2018 20:15:47 +0000 (16:15 -0400)]
Merge branch '13198-keep-web-metrics'

refs #13198

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoReflect the new name and url for the public evaluation and trial instance,
Ward Vandewege [Thu, 19 Jul 2018 19:55:18 +0000 (15:55 -0400)]
Reflect the new name and url for the public evaluation and trial instance,
Arvados Playground.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years agoMerge branch '13868-invalid-node-size' refs #13868
Peter Amstutz [Thu, 19 Jul 2018 16:09:44 +0000 (12:09 -0400)]
Merge branch '13868-invalid-node-size' refs #13868

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13868: Fallback behavior when arvados_node_size tag is missing
Peter Amstutz [Thu, 19 Jul 2018 15:12:05 +0000 (11:12 -0400)]
13868: Fallback behavior when arvados_node_size tag is missing

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '13645-fix-arvados-api-host-insecure'
Fuad Muhic [Thu, 19 Jul 2018 14:59:19 +0000 (16:59 +0200)]
Merge branch '13645-fix-arvados-api-host-insecure'

refs #13645

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

5 years agorefs #13667 "Merge branch '13667-add-version-file'".
Fernando Monserrat [Thu, 19 Jul 2018 14:47:18 +0000 (11:47 -0300)]
refs #13667 "Merge branch '13667-add-version-file'".
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years agoMerge branch '13399-nice-logs'
Tom Clegg [Thu, 19 Jul 2018 01:44:23 +0000 (21:44 -0400)]
Merge branch '13399-nice-logs'

refs #13399

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch '13804-no-shutdown-wanted-nodes' refs #13804
Peter Amstutz [Wed, 18 Jul 2018 18:02:40 +0000 (14:02 -0400)]
Merge branch '13804-no-shutdown-wanted-nodes' refs #13804

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoremove trailing white space from all files
Fuad Muhic [Wed, 18 Jul 2018 10:43:20 +0000 (12:43 +0200)]
remove trailing white space from all files

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

5 years agoadd tests for exec and getConnection methods in HttpRequest class
Fuad Muhic [Wed, 18 Jul 2018 10:36:41 +0000 (12:36 +0200)]
add tests for exec and getConnection methods in HttpRequest class

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

5 years ago13399: Link to wiki in warning message.
Tom Clegg [Tue, 17 Jul 2018 21:04:05 +0000 (17:04 -0400)]
13399: Link to wiki in warning message.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago13399: Recognize held jobs with priority between 1 and 20K.
Tom Clegg [Tue, 17 Jul 2018 19:32:45 +0000 (15:32 -0400)]
13399: Recognize held jobs with priority between 1 and 20K.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago13399: If slurm refuses to renice past 10K, stop trying.
Tom Clegg [Tue, 3 Jul 2018 21:03:11 +0000 (17:03 -0400)]
13399: If slurm refuses to renice past 10K, stop trying.

Fixes log spam.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch 'master' into 13804-no-shutdown-wanted-nodes
Peter Amstutz [Tue, 17 Jul 2018 20:55:52 +0000 (16:55 -0400)]
Merge branch 'master' into 13804-no-shutdown-wanted-nodes

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13804: Update comments for comments for "consecutive_idle_count"
Peter Amstutz [Tue, 17 Jul 2018 20:53:31 +0000 (16:53 -0400)]
13804: Update comments for comments for "consecutive_idle_count"

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '13803-oj-gem-malloc-bug'
Lucas Di Pentima [Tue, 17 Jul 2018 19:19:23 +0000 (16:19 -0300)]
Merge branch '13803-oj-gem-malloc-bug'
Closes #13803

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago13804: Fix tests
Peter Amstutz [Tue, 17 Jul 2018 18:47:01 +0000 (14:47 -0400)]
13804: Fix tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13198: Document metrics endpoints.
Tom Clegg [Tue, 17 Jul 2018 18:17:47 +0000 (14:17 -0400)]
13198: Document metrics endpoints.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoFix typo.
Ward Vandewege [Tue, 17 Jul 2018 17:14:44 +0000 (13:14 -0400)]
Fix typo.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years agoMerge branch '13822-nm-delayed-daemon' refs #13822
Peter Amstutz [Tue, 17 Jul 2018 15:40:38 +0000 (11:40 -0400)]
Merge branch '13822-nm-delayed-daemon' refs #13822

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13198: Track & serve keep-web metrics.
Tom Clegg [Tue, 17 Jul 2018 15:38:45 +0000 (11:38 -0400)]
13198: Track & serve keep-web metrics.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch 'master' into 13822-nm-delayed-daemon
Peter Amstutz [Tue, 17 Jul 2018 14:26:29 +0000 (10:26 -0400)]
Merge branch 'master' into 13822-nm-delayed-daemon

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13804: Smarter shutdown behavior WIP
Peter Amstutz [Tue, 17 Jul 2018 13:51:23 +0000 (09:51 -0400)]
13804: Smarter shutdown behavior WIP

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13803: Fix behavior change on Oj 3.x
Lucas Di Pentima [Mon, 16 Jul 2018 23:43:38 +0000 (20:43 -0300)]
13803: Fix behavior change on Oj 3.x

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago13804: Try to cancel pending shutdowns if nodes are needed
Peter Amstutz [Mon, 16 Jul 2018 21:19:53 +0000 (17:19 -0400)]
13804: Try to cancel pending shutdowns if nodes are needed

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13803: Re-enable Oj's rails optimizations & fix time format test failures.
Lucas Di Pentima [Mon, 16 Jul 2018 20:52:52 +0000 (17:52 -0300)]
13803: Re-enable Oj's rails optimizations & fix time format test failures.

There's one failing test pending on collection controller: when asking for
the index with select="" the followin exception is being masked by
load_limit_offset_order_params():

JSON::ParserError: Empty input at line 1, column 1 [parse.c:928]

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago13804: Node must report as "idle" two consecutive times
Peter Amstutz [Mon, 16 Jul 2018 20:05:02 +0000 (16:05 -0400)]
13804: Node must report as "idle" two consecutive times

Gives idle nodes 1 poll period to be allocated by slurm before
becoming candidates for shutdown.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13198: Test case for keep-web metrics.
Tom Clegg [Mon, 16 Jul 2018 19:01:42 +0000 (15:01 -0400)]
13198: Test case for keep-web metrics.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago13822: Don't call list_sizes() in cloud client constructor.
Peter Amstutz [Mon, 16 Jul 2018 18:54:35 +0000 (14:54 -0400)]
13822: Don't call list_sizes() in cloud client constructor.

Also make subscribe() call to SetupActor asynchronous.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13803: Remove oj_mimic_json gem.
Lucas Di Pentima [Mon, 16 Jul 2018 18:47:14 +0000 (15:47 -0300)]
13803: Remove oj_mimic_json gem.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago13198: Move metrics to httpserver package.
Tom Clegg [Mon, 16 Jul 2018 14:42:23 +0000 (10:42 -0400)]
13198: Move metrics to httpserver package.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch '13799-install-doc-sections' refs #13799
Peter Amstutz [Mon, 16 Jul 2018 13:50:27 +0000 (09:50 -0400)]
Merge branch '13799-install-doc-sections' refs #13799

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '13497-controller'
Tom Clegg [Fri, 13 Jul 2018 20:31:11 +0000 (16:31 -0400)]
Merge branch '13497-controller'

refs #13497

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago13497: Merge branch 'master' into 13497-controller
Tom Clegg [Fri, 13 Jul 2018 20:30:48 +0000 (16:30 -0400)]
13497: Merge branch 'master' into 13497-controller

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago13667: clean up
Fernando Monserrat [Fri, 13 Jul 2018 19:10:56 +0000 (16:10 -0300)]
13667: clean up
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years ago13667: test fail on rpm package
Fernando Monserrat [Fri, 13 Jul 2018 18:01:03 +0000 (15:01 -0300)]
13667: test fail on rpm package
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years ago13497: Add comments on odd Nginx config. Less confusing vhost name.
Tom Clegg [Fri, 13 Jul 2018 17:24:07 +0000 (13:24 -0400)]
13497: Add comments on odd Nginx config. Less confusing vhost name.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago13667: test fail on rpm package
Fernando Monserrat [Fri, 13 Jul 2018 15:44:55 +0000 (12:44 -0300)]
13667: test fail on rpm package
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years ago13497: Improve nginx logging in test suite.
Tom Clegg [Fri, 13 Jul 2018 14:51:43 +0000 (10:51 -0400)]
13497: Improve nginx logging in test suite.

Include request scheme://host:port, elapsed time, and upstream server
type.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago13497: Avoid misdirecting POST to GET when request has double slash.
Tom Clegg [Thu, 12 Jul 2018 20:50:59 +0000 (16:50 -0400)]
13497: Avoid misdirecting POST to GET when request has double slash.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago13497: Use X-Forwarded-Proto as scheme for keep-web redirect URLs.
Tom Clegg [Thu, 12 Jul 2018 20:43:37 +0000 (16:43 -0400)]
13497: Use X-Forwarded-Proto as scheme for keep-web redirect URLs.

This avoids relying on the downstream proxy to rewrite redirects.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago13497: Fix Rails redirect targets.
Tom Clegg [Thu, 12 Jul 2018 18:09:59 +0000 (14:09 -0400)]
13497: Fix Rails redirect targets.

Rails relies on the X-Forwarded-Proto request header, so we need to
set that in the test suite's Nginx config, like we do in the install
guide.

Also tidy up needlessly divergent proxy directives in Nginx test
config.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago13803: Upgrade oj to latest on workbench
Lucas Di Pentima [Fri, 13 Jul 2018 14:43:01 +0000 (11:43 -0300)]
13803: Upgrade oj to latest on workbench

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago13803: Upgrade oj dependency on arvados-cli gem.
Lucas Di Pentima [Fri, 13 Jul 2018 14:34:48 +0000 (11:34 -0300)]
13803: Upgrade oj dependency on arvados-cli gem.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago13803: Upgrade oj gem on API server by removing arvados-cli dependency
Lucas Di Pentima [Fri, 13 Jul 2018 14:33:41 +0000 (11:33 -0300)]
13803: Upgrade oj gem on API server by removing arvados-cli dependency

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago13667: test fail on rpm package
Fernando Monserrat [Thu, 12 Jul 2018 20:52:48 +0000 (17:52 -0300)]
13667: test fail on rpm package
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years ago13667: test fail on rpm package
Fernando Monserrat [Thu, 12 Jul 2018 20:21:44 +0000 (17:21 -0300)]
13667: test fail on rpm package
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years ago13667: test fail on rpm package
Fernando Monserrat [Thu, 12 Jul 2018 20:01:01 +0000 (17:01 -0300)]
13667: test fail on rpm package
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years ago13667: test fail on rpm package
Fernando Monserrat [Thu, 12 Jul 2018 19:51:13 +0000 (16:51 -0300)]
13667: test fail on rpm package
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years ago13667: test fail on rpm package
Fernando Monserrat [Thu, 12 Jul 2018 19:37:22 +0000 (16:37 -0300)]
13667: test fail on rpm package
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years ago13799: More install doc refactor
Peter Amstutz [Thu, 12 Jul 2018 18:18:14 +0000 (14:18 -0400)]
13799: More install doc refactor

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoFix slow tests skipped even when not in --short mode.
Tom Clegg [Thu, 12 Jul 2018 16:36:37 +0000 (12:36 -0400)]
Fix slow tests skipped even when not in --short mode.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago13799: Install doc refactor WIP
Peter Amstutz [Thu, 12 Jul 2018 15:34:56 +0000 (11:34 -0400)]
13799: Install doc refactor WIP

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13667: test fail on rpm package
Fernando Monserrat [Thu, 12 Jul 2018 15:07:21 +0000 (12:07 -0300)]
13667: test fail on rpm package
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years ago13497: Fix bypassing controller in test suite after calling reset().
Tom Clegg [Thu, 12 Jul 2018 15:06:45 +0000 (11:06 -0400)]
13497: Fix bypassing controller in test suite after calling reset().

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago13667: remove PKG_VERSION in run-build-packages
Fernando Monserrat [Thu, 12 Jul 2018 14:06:05 +0000 (11:06 -0300)]
13667: remove PKG_VERSION in run-build-packages
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years agoMerge branch '13690-composer-install' refs #13690
Peter Amstutz [Thu, 12 Jul 2018 13:57:30 +0000 (09:57 -0400)]
Merge branch '13690-composer-install' refs #13690

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13667: remove PKG_VERSION in run-build-packages
Fernando Monserrat [Wed, 11 Jul 2018 20:23:14 +0000 (17:23 -0300)]
13667: remove PKG_VERSION in run-build-packages
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years ago13667: test add PKG_VERSION in run-build-packages
Fernando Monserrat [Wed, 11 Jul 2018 20:10:00 +0000 (17:10 -0300)]
13667: test add PKG_VERSION in run-build-packages
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years ago13667: test add config-file for rpm
Fernando Monserrat [Wed, 11 Jul 2018 19:35:19 +0000 (16:35 -0300)]
13667: test add config-file for rpm
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years agoMerge branch '13767-reserve-ram-doc' closes #13767
Peter Amstutz [Wed, 11 Jul 2018 19:34:08 +0000 (15:34 -0400)]
Merge branch '13767-reserve-ram-doc' closes #13767

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13767: Tweak text for ReserveExtraRAM to specify default value.
Peter Amstutz [Wed, 11 Jul 2018 19:29:42 +0000 (15:29 -0400)]
13767: Tweak text for ReserveExtraRAM to specify default value.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13497: Merge branch 'master' into 13497-controller
Tom Clegg [Wed, 11 Jul 2018 19:19:55 +0000 (15:19 -0400)]
13497: Merge branch 'master' into 13497-controller

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch '12983-containerd' closes #12983
Peter Amstutz [Wed, 11 Jul 2018 19:17:53 +0000 (15:17 -0400)]
Merge branch '12983-containerd' closes #12983

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago12983: Change break -> return to exit goroutine, add comment
Peter Amstutz [Wed, 11 Jul 2018 19:15:38 +0000 (15:15 -0400)]
12983: Change break -> return to exit goroutine, add comment

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13667: test add config-file for rpm
Fernando Monserrat [Wed, 11 Jul 2018 18:37:49 +0000 (15:37 -0300)]
13667: test add config-file for rpm
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years agoMerge branch '13780-sprockets' closes #13780
Peter Amstutz [Wed, 11 Jul 2018 17:32:03 +0000 (13:32 -0400)]
Merge branch '13780-sprockets' closes #13780

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13497: 13779: Forward Host header, and don't follow redirects.
Tom Clegg [Wed, 11 Jul 2018 13:27:12 +0000 (09:27 -0400)]
13497: 13779: Forward Host header, and don't follow redirects.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoFix: subcommand not recognized in $0 when no CLI args are given.
Tom Clegg [Wed, 11 Jul 2018 03:00:06 +0000 (23:00 -0400)]
Fix: subcommand not recognized in $0 when no CLI args are given.

refs #13779

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago13667: clean up version file generationx
Fernando Monserrat [Tue, 10 Jul 2018 21:03:03 +0000 (18:03 -0300)]
13667: clean up version file generationx
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years ago13690: Add Composer install documentation
Peter Amstutz [Tue, 10 Jul 2018 20:16:44 +0000 (16:16 -0400)]
13690: Add Composer install documentation

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13667: fix variable in adding version file to ROR packages
Fernando Monserrat [Tue, 10 Jul 2018 19:53:08 +0000 (16:53 -0300)]
13667: fix variable in adding version file to ROR packages
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years ago13667: fix variable in adding version file to ROR packages
Fernando Monserrat [Tue, 10 Jul 2018 19:25:29 +0000 (16:25 -0300)]
13667: fix variable in adding version file to ROR packages
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years ago13780: Update sprockets gem
Peter Amstutz [Tue, 10 Jul 2018 19:04:28 +0000 (15:04 -0400)]
13780: Update sprockets gem

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13667: fix variable in adding version file to ROR packages
Fernando Monserrat [Tue, 10 Jul 2018 18:50:42 +0000 (15:50 -0300)]
13667: fix variable in adding version file to ROR packages
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years agoMerge branch '13501-subprocess32'
Lucas Di Pentima [Tue, 10 Jul 2018 18:50:27 +0000 (15:50 -0300)]
Merge branch '13501-subprocess32'
Closes #13501

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '13668-api-wb-package-version'
Lucas Di Pentima [Tue, 10 Jul 2018 18:31:50 +0000 (15:31 -0300)]
Merge branch '13668-api-wb-package-version'
Closes #13668

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago12983: Tweak error regex
Peter Amstutz [Tue, 10 Jul 2018 18:31:28 +0000 (14:31 -0400)]
12983: Tweak error regex

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago12983: Add another error message to the "broken node" blacklist.
Peter Amstutz [Tue, 10 Jul 2018 18:27:38 +0000 (14:27 -0400)]
12983: Add another error message to the "broken node" blacklist.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago12983: Command line option takes duration. Add tests.
Peter Amstutz [Tue, 10 Jul 2018 18:12:32 +0000 (14:12 -0400)]
12983: Command line option takes duration.  Add tests.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13668: Updates VersionHelper on workbench to read packageVersion key
Lucas Di Pentima [Tue, 10 Jul 2018 17:58:38 +0000 (14:58 -0300)]
13668: Updates VersionHelper on workbench to read packageVersion key

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago13668: Replaced package_version with packageVersion on discovery doc.
Lucas Di Pentima [Tue, 10 Jul 2018 17:47:52 +0000 (14:47 -0300)]
13668: Replaced package_version with packageVersion on discovery doc.

Also, enhanced package version caching on api server & workbench.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago12983: Periodically check for containerd
Peter Amstutz [Tue, 10 Jul 2018 13:49:17 +0000 (09:49 -0400)]
12983: Periodically check for containerd

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13667: fix variable in adding version file to ROR packages
Fernando Monserrat [Tue, 10 Jul 2018 15:19:10 +0000 (12:19 -0300)]
13667: fix variable in adding version file to ROR packages
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years ago13667: Add version file to ROR packages
Fernando Monserrat [Tue, 10 Jul 2018 14:49:30 +0000 (11:49 -0300)]
13667: Add version file to ROR packages
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

5 years agoMerge branch '13330-cwl-intermediate-collections-cleanup'
Fuad Muhic [Tue, 10 Jul 2018 14:20:09 +0000 (16:20 +0200)]
Merge branch '13330-cwl-intermediate-collections-cleanup'

closes #13330

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

5 years agoMerge branch 'master' of git.curoverse.com:arvados into 13330-cwl-intermediate-collec...
Fuad Muhic [Tue, 10 Jul 2018 10:48:03 +0000 (12:48 +0200)]
Merge branch 'master' of git.curoverse.com:arvados into 13330-cwl-intermediate-collections-cleanup

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

5 years agoUpdate get_intermediate_collection_info and add owner_uuid to save_new
Fuad Muhic [Tue, 10 Jul 2018 10:33:43 +0000 (12:33 +0200)]
Update get_intermediate_collection_info and add owner_uuid to save_new
method in arvcontainer.py and arvjob.py

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

5 years ago13668: Adds package version to workbench. Reports versions on dialog.
Lucas Di Pentima [Mon, 9 Jul 2018 21:01:19 +0000 (18:01 -0300)]
13668: Adds package version to workbench. Reports versions on dialog.

API & Workbench package versions are displayed on the 'Show version' &
'Report problem' dialogs.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago13668: Adds support for package version on API server.
Lucas Di Pentima [Mon, 9 Jul 2018 20:24:56 +0000 (17:24 -0300)]
13668: Adds support for package version on API server.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago13501: Adds subprocess32 install dependency on python-client for keepdocker.
Lucas Di Pentima [Mon, 9 Jul 2018 18:33:37 +0000 (15:33 -0300)]
13501: Adds subprocess32 install dependency on python-client for keepdocker.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago13501: Replaces subprocess with subprocess32 on keepdocker.
Lucas Di Pentima [Mon, 9 Jul 2018 18:09:34 +0000 (15:09 -0300)]
13501: Replaces subprocess with subprocess32 on keepdocker.

Reverted subprocess32 usage on arvados_version.py files so that package
building scripts don't break.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago13501: Replaces subprocess with subprocess32 on arvados-cwl-runner
Lucas Di Pentima [Mon, 9 Jul 2018 17:05:22 +0000 (14:05 -0300)]
13501: Replaces subprocess with subprocess32 on arvados-cwl-runner

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '13766-libyaml-workaround' refs #13766
Peter Amstutz [Mon, 9 Jul 2018 16:41:24 +0000 (12:41 -0400)]
Merge branch '13766-libyaml-workaround' refs #13766

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13767: Update crunch-dispatch-slurm install docs
Peter Amstutz [Mon, 9 Jul 2018 14:11:38 +0000 (10:11 -0400)]
13767: Update crunch-dispatch-slurm install docs

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoRemove _get_intermediate_collection_info method and create function
Fuad Muhic [Mon, 9 Jul 2018 13:08:59 +0000 (15:08 +0200)]
Remove _get_intermediate_collection_info method and create function
with same name

Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic@capeannenterprises.com>

5 years agoMerge branch '13681-wb-acr-submit-ram' closes #13681
Peter Amstutz [Mon, 9 Jul 2018 12:48:16 +0000 (08:48 -0400)]
Merge branch '13681-wb-acr-submit-ram' closes #13681

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13681: Fix workbench for workflows that don't have "hints"
Peter Amstutz [Fri, 6 Jul 2018 19:41:46 +0000 (15:41 -0400)]
13681: Fix workbench for workflows that don't have "hints"

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13681: Revert to yaml.round_trip_dump instead of json.dumps().
Peter Amstutz [Fri, 6 Jul 2018 17:48:34 +0000 (13:48 -0400)]
13681: Revert to yaml.round_trip_dump instead of json.dumps().

Also style tweaks.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago13681: Add new test file
Peter Amstutz [Thu, 5 Jul 2018 20:28:13 +0000 (16:28 -0400)]
13681: Add new test file

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>