Ward Vandewege [Thu, 29 Jul 2021 18:01:35 +0000 (14:01 -0400)]
17949: add support for Debian Bullseye in our build scripts. Remove some
configuration for older, no longer supported distributions.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Tom Clegg [Thu, 29 Jul 2021 13:57:48 +0000 (09:57 -0400)]
Merge branch '17756-dispatch-lsf' into main
closes #17756
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Thu, 29 Jul 2021 03:45:23 +0000 (23:45 -0400)]
17574: Fix misleading errors after reaching update limit.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Wed, 28 Jul 2021 22:23:05 +0000 (18:23 -0400)]
17574: Update test.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Wed, 28 Jul 2021 22:22:08 +0000 (18:22 -0400)]
17574: Fix wait on empty channel.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Wed, 28 Jul 2021 20:20:33 +0000 (16:20 -0400)]
17574: Update install/upgrade docs wrt PostgreSQL access.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Wed, 28 Jul 2021 20:11:52 +0000 (16:11 -0400)]
17574: Batch updates into transactions, skip when unchanged.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Ward Vandewege [Wed, 28 Jul 2021 19:28:17 +0000 (15:28 -0400)]
Fix the example AWS InstanceTypes for the installer, none of these node
types come with IncludedScratch.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Wed, 28 Jul 2021 15:11:50 +0000 (11:11 -0400)]
Merge branch '17903-login-sync-centos7'
closes #17903
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Wed, 28 Jul 2021 15:11:11 +0000 (11:11 -0400)]
17903: Merge branch 'main' into 17903-login-sync-centos7
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Lucas Di Pentima [Wed, 28 Jul 2021 13:43:07 +0000 (10:43 -0300)]
Merge branch '17830-reqid-header-propagation-fix' into main. Closes #17830
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Tom Clegg [Wed, 28 Jul 2021 04:19:03 +0000 (00:19 -0400)]
17574: Process collections in a worker pool.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Wed, 28 Jul 2021 04:18:53 +0000 (00:18 -0400)]
17574: Add BalanceUpdateLimit config, fix tests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Wed, 28 Jul 2021 04:13:50 +0000 (00:13 -0400)]
17574: add -pprof flag to service commands.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Wed, 28 Jul 2021 04:04:56 +0000 (00:04 -0400)]
17574: Speed up manifest parsing.
Previous code spent a lot of time allocating, copying, and GCing
strings. Working with byte slices is much faser.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Lucas Di Pentima [Tue, 27 Jul 2021 21:19:54 +0000 (18:19 -0300)]
17830: Moves header setting code to cover more use cases.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Tue, 27 Jul 2021 19:22:26 +0000 (16:22 -0300)]
17830: Adds test cases & fixes one more issue.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Ward Vandewege [Tue, 27 Jul 2021 18:40:19 +0000 (14:40 -0400)]
17903: use more distribution-agnostic commands to add/remove a user
to/from a group. This makes arvados-login-sync work on CentOS as
well as Debian-based distributions.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Tom Clegg [Tue, 27 Jul 2021 15:23:48 +0000 (11:23 -0400)]
17574: Add -update-confirmed-fields=false option.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Tue, 27 Jul 2021 15:16:49 +0000 (11:16 -0400)]
17574: Get collections directly from DB instead of controller.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Lucas Di Pentima [Tue, 27 Jul 2021 14:35:21 +0000 (11:35 -0300)]
Merge branch '16665-keepproxy-spurious-413-status' into main. Closes #16665
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Tom Clegg [Mon, 26 Jul 2021 20:02:31 +0000 (16:02 -0400)]
Merge branch '17813-docker-to-singularity' into main
refs #17813
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Mon, 26 Jul 2021 20:01:54 +0000 (16:01 -0400)]
17813: Error out if sif cache collection cannot be created.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Mon, 26 Jul 2021 19:28:01 +0000 (15:28 -0400)]
17574: Update replication_confirmed fields after keep-balance run.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Ward Vandewege [Mon, 26 Jul 2021 19:09:44 +0000 (15:09 -0400)]
Fix typo in documentation.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Lucas Di Pentima [Mon, 26 Jul 2021 14:32:05 +0000 (11:32 -0300)]
Merge branch '17388-arvcopy-storage-classes' into main. Closes #17388
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Fri, 23 Jul 2021 22:52:00 +0000 (19:52 -0300)]
17388: Adds storage classes support to arv-copy.
Also, updates tests and documentation.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Peter Amstutz [Fri, 23 Jul 2021 18:35:15 +0000 (14:35 -0400)]
17813: Handle case where the cache collection update fails
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Javier Bértoli [Fri, 23 Jul 2021 18:02:45 +0000 (15:02 -0300)]
17535: Modify provision script to run on Centos
Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@curii.com>
Peter Amstutz [Thu, 22 Jul 2021 21:32:44 +0000 (17:32 -0400)]
17813: Fix tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Lucas Di Pentima [Thu, 22 Jul 2021 21:02:53 +0000 (18:02 -0300)]
16665: Fixes tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Peter Amstutz [Thu, 22 Jul 2021 20:44:19 +0000 (16:44 -0400)]
17813: continue refactor & fix tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Lucas Di Pentima [Thu, 22 Jul 2021 20:30:51 +0000 (17:30 -0300)]
16665: Wraps error type to be able to differentiate it in a case switch.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Thu, 22 Jul 2021 20:24:26 +0000 (17:24 -0300)]
16665: Exposes bug through updated test.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Peter Amstutz [Thu, 22 Jul 2021 20:22:39 +0000 (16:22 -0400)]
17813: Refactor singularity image loading / caching / conversion
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Lucas Di Pentima [Thu, 22 Jul 2021 18:31:11 +0000 (15:31 -0300)]
17830: Copies request's X-Request-Id header to response. Moves tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Wed, 21 Jul 2021 23:51:10 +0000 (20:51 -0300)]
17830: Sets up X-Request-Id if not provided by client. Adds it to the response.
Uses the IDGenerator to explicitly set one request id if needed, so that it
can return it to the client without the need to dig it out from the railsAPI
response.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Tue, 20 Jul 2021 20:59:58 +0000 (17:59 -0300)]
17830: Adds controller tests exposing the X-Request-Id header propagation bug.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Tue, 20 Jul 2021 19:23:36 +0000 (16:23 -0300)]
17830: Customizes ActionDispatch::RequestId middleware to our needs.
Moves all the request id code to the proper middleware, and updates tests.
As functional tests are "unit tests for controllers", things that happen inside
middlewares need to be tested from integration tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Tue, 20 Jul 2021 14:26:21 +0000 (11:26 -0300)]
17830: Adds test exposing incorrect X-Request-Id format on railsAPI.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Tom Clegg [Thu, 22 Jul 2021 15:10:25 +0000 (11:10 -0400)]
17756: Fix test.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Thu, 22 Jul 2021 15:06:29 +0000 (11:06 -0400)]
17756: Note that bsub sudo user must exist on worker nodes.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Thu, 22 Jul 2021 14:36:14 +0000 (10:36 -0400)]
17756: Move "no suitable instance type" reporting to dispatch lib.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Ward Vandewege [Thu, 22 Jul 2021 14:27:45 +0000 (10:27 -0400)]
Merge branch '17863-bundler-update'
closes #17863
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Thu, 22 Jul 2021 14:25:59 +0000 (10:25 -0400)]
17863: Merge branch 'main' into 17863-bundler-update
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Thu, 22 Jul 2021 13:02:27 +0000 (09:02 -0400)]
17863: further cleanup in our rails postinst scripts and documentation:
* replace `bundle exec` calls with the appropriate binstub
* update deprecated use of `bundle install --path` to avoid warning
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Wed, 21 Jul 2021 12:46:46 +0000 (08:46 -0400)]
Merge branch '17962-bump-lib-pq'
closes #17962
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Wed, 21 Jul 2021 12:46:12 +0000 (08:46 -0400)]
17962: Merge branch 'main' into 17962-bump-lib-pq
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Peter Amstutz [Tue, 20 Jul 2021 21:01:24 +0000 (17:01 -0400)]
17813: Change default value of runtime_auth_scopes to []
It is documented to be an array of strings, so having the default be
an object just seems to be a mistake.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 20 Jul 2021 21:01:08 +0000 (17:01 -0400)]
17813: Fix tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 20 Jul 2021 20:28:30 +0000 (16:28 -0400)]
Make singularity suid in arvbox, crunch-dispatch-local runs as user
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Ward Vandewege [Tue, 20 Jul 2021 19:25:05 +0000 (15:25 -0400)]
17962: Bump the version of lib/pq to 1.10.2
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Tue, 20 Jul 2021 17:08:46 +0000 (13:08 -0400)]
Another doc tweak.
refs #17464
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Tue, 20 Jul 2021 15:53:27 +0000 (11:53 -0400)]
Add some more clarifications to the doc page about restricting uploads
and downloads.
refs #17464
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Peter Amstutz [Tue, 20 Jul 2021 15:15:44 +0000 (11:15 -0400)]
17813: Handle setting $HOME as a special case
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Nico Cesar [Tue, 20 Jul 2021 14:07:09 +0000 (10:07 -0400)]
Merge branch '17748-extra-claims-take2'
closes #17748
Arvados-DCO-1.1-Signed-off-by: Nico Cesar <nico@curii.com>
Ward Vandewege [Tue, 20 Jul 2021 12:47:52 +0000 (08:47 -0400)]
Fix typos in the documentation.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Nico Cesar [Mon, 19 Jul 2021 22:03:38 +0000 (18:03 -0400)]
OIDC given name / family name fields support
Arvados-DCO-1.1-Signed-off-by: Nico Cesar <nico@nicocesar.com>
Peter Amstutz [Mon, 19 Jul 2021 20:13:33 +0000 (16:13 -0400)]
17813: Upload .sif file to cache project & read it from keep
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Ward Vandewege [Mon, 19 Jul 2021 15:17:46 +0000 (11:17 -0400)]
17863: update to using bundler 2.2.19 everywhere.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Mon, 19 Jul 2021 14:25:56 +0000 (10:25 -0400)]
Fix arvbox demo image build.
refs #17816
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Peter Amstutz [Fri, 16 Jul 2021 21:26:31 +0000 (17:26 -0400)]
17813: Singularity image caching wip
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Fri, 16 Jul 2021 20:42:46 +0000 (16:42 -0400)]
17756: Review feedback.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Lucas Di Pentima [Fri, 16 Jul 2021 19:03:20 +0000 (16:03 -0300)]
Merge branch '17573-export-storage-classes' into main. Refs #17573
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Peter Amstutz [Fri, 16 Jul 2021 15:27:06 +0000 (11:27 -0400)]
Merge branch '17816-singularity-cwd' into main refs #17816
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Fri, 16 Jul 2021 15:23:31 +0000 (11:23 -0400)]
Merge branch '17394-collectionfs-storage-class' into main
closes #17394
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Peter Amstutz [Fri, 16 Jul 2021 15:00:57 +0000 (11:00 -0400)]
17816: Sort bind mounts on singularity command line
Need to mount parent directories before we can mount things inside
them.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Fri, 16 Jul 2021 14:44:57 +0000 (10:44 -0400)]
17816: Add test.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Peter Amstutz [Thu, 15 Jul 2021 17:50:22 +0000 (13:50 -0400)]
17816: Set the current working directory in the singularity container
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 15 Jul 2021 19:58:45 +0000 (15:58 -0400)]
17816: crunch-dispatch-local uses cluster config.
Added upgrade note.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 14 Jul 2021 20:47:45 +0000 (16:47 -0400)]
17816: Fix tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 14 Jul 2021 20:39:02 +0000 (16:39 -0400)]
17816: Make singularity-in-arvbox work
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 14 Jul 2021 20:37:19 +0000 (16:37 -0400)]
17816: Add --runtime-engine to crunch-dispatch-local and crunch-dispatch-slurm
refs #17816
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 14 Jul 2021 18:50:07 +0000 (14:50 -0400)]
Don't pull arvbox checkouts after clone
We already have latest and tags/detached HEADS can't be pulled anyway
(and they fail, which is the real problem).
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 14 Jul 2021 18:12:08 +0000 (14:12 -0400)]
arvbox docs include a docker image tag
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 14 Jul 2021 17:57:37 +0000 (13:57 -0400)]
Add ARVADOS_BRANCH and WORKBENCH2_BRANCH to arvbox
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 14 Jul 2021 15:19:58 +0000 (11:19 -0400)]
Fix "wrong bundler" error starting API server in arvbox
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Fri, 16 Jul 2021 14:24:42 +0000 (10:24 -0400)]
17816: Close stdin/stdout/stderr from main instead of executor.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Thu, 15 Jul 2021 14:13:39 +0000 (10:13 -0400)]
17394: Check by_id dir obeys storage classes.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Thu, 15 Jul 2021 13:44:17 +0000 (09:44 -0400)]
17394: Update callback name.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Thu, 15 Jul 2021 13:42:21 +0000 (09:42 -0400)]
17394: Use BlockWrite interface in crunch-run.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Thu, 15 Jul 2021 13:27:25 +0000 (09:27 -0400)]
17394: Test BlockWrite storage classes precedence.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Lucas Di Pentima [Thu, 15 Jul 2021 01:22:37 +0000 (22:22 -0300)]
17573: Adds test storage classes to arvados-server test mode.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Thu, 8 Jul 2021 19:31:27 +0000 (16:31 -0300)]
17573: Exposes storage classes for every configured volume.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Tom Clegg [Wed, 14 Jul 2021 20:52:12 +0000 (16:52 -0400)]
17394: Propagate storage classes when writing data via collectionfs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Peter Amstutz [Wed, 14 Jul 2021 18:50:07 +0000 (14:50 -0400)]
Don't pull arvbox checkouts after clone
We already have latest and tags/detached HEADS can't be pulled anyway
(and they fail, which is the real problem).
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 14 Jul 2021 18:12:08 +0000 (14:12 -0400)]
arvbox docs include a docker image tag
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 14 Jul 2021 17:57:37 +0000 (13:57 -0400)]
Add ARVADOS_BRANCH and WORKBENCH2_BRANCH to arvbox
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 14 Jul 2021 15:19:58 +0000 (11:19 -0400)]
Fix "wrong bundler" error starting API server in arvbox
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 13 Jul 2021 21:11:57 +0000 (17:11 -0400)]
arvbox uses react-scripts, refs #17782
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Lucas Di Pentima [Tue, 13 Jul 2021 19:55:30 +0000 (16:55 -0300)]
Merge branch '17913-addressable-upgrade' into main. Closes #17913
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Tue, 13 Jul 2021 19:14:49 +0000 (16:14 -0300)]
17913: Upgrades 'addressable' gem to 2.8.0
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Mon, 12 Jul 2021 15:14:28 +0000 (12:14 -0300)]
Merge branch '17782-nodejs-update' into main
Refs #17782
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Peter Amstutz [Fri, 9 Jul 2021 14:54:30 +0000 (10:54 -0400)]
Pin networkx to avoid new version that pulls in scipy/numpy
refs #17879
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 8 Jul 2021 21:02:36 +0000 (17:02 -0400)]
Add missing link to "restricting-upload-download" to doc refs #17464
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 8 Jul 2021 19:24:55 +0000 (15:24 -0400)]
Merge branch '17879-update-schema-salad' into main refs #17879
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 8 Jul 2021 19:20:51 +0000 (15:20 -0400)]
17879: Add test that acr doesn't fail on sbg fields
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 8 Jul 2021 18:36:00 +0000 (14:36 -0400)]
17879: Default --thread-count=0, upgrade schema-salad
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 7 Jul 2021 20:23:27 +0000 (16:23 -0400)]
Put the default arvados-cwl-runner --thread-count back down to 1.
On account of reports of workflows deadlocking.
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 7 Jul 2021 20:18:58 +0000 (16:18 -0400)]
Merge branch '17858-cwl-exprtool-defaults' into main refs #17858
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
projects / arvados.git / log