Peter Amstutz [Tue, 31 Mar 2015 21:13:06 +0000 (17:13 -0400)]
5612: Wrap munge with startup script that cleans up /var/run/munge of stale
sockets and pidfiles. Can now run jobs after stopping and restarting
containers.
Brett Smith [Thu, 26 Mar 2015 16:29:38 +0000 (12:29 -0400)]
5502: Adjust id and name of Node Manager cloud object mocks.
Some GCE objects like disk types have predictable names, so it's
helpful to be able to mock objects with the same name. Use the
name_id argument is the literal name, and generate an id from it.
Brett Smith [Wed, 18 Mar 2015 20:00:01 +0000 (16:00 -0400)]
4253: Use new username to set up repository and VM logins.
The usernames added in 4253 have stricter limits than past usernames
generated to set up a repository and VM login. Use the new generated
username to avoid a weird disconnect between that and these related
objects. Do a little cleanup in the tests, including removing some
test parameters that now seem redundant under the new rules.
Brett Smith [Tue, 17 Mar 2015 22:10:14 +0000 (18:10 -0400)]
4253: Add a username attribute to users.
* Add the column, and propagate it based on available VM logins or
e-mail address, if possible.
* Add format validation and tests.
* Set new usernames based on e-mail address, with tests.
Radhika Chippada [Wed, 25 Mar 2015 14:16:27 +0000 (10:16 -0400)]
5556: Added select() to @logs in CollectionsController#show to avoid trasporting the unneeded log properties.
Also, added Accept-Encoding request header in workbench request to api server.
Radhika Chippada [Tue, 24 Mar 2015 13:49:38 +0000 (09:49 -0400)]
5534: When a pipeline has long running jobs with hundreds of thousands of log lines, the log line display is timing out
fetching all those lines. Limiting the number of log lines retrieved helped resolve this issue. Using limit size of 2000.
I was able to see log when I limited to 10000 log lines as well, but it took much longer wait time and I felt a quicker
response might provide a better user experience and hence using 2000 log lines as the limit. Thus the most recent 2000
log lines are fetched, followed by newer log lines from event log if the job is still running.
Peter Amstutz [Mon, 23 Mar 2015 21:12:55 +0000 (17:12 -0400)]
5539: Arvados-in-Docker improvements
* arvdock start now restarts existing containers instead of deleting them. Use arvdock reset to delete the containers.
* Uses docker data container for keep.
* Prints a note about adding the nameserver to /etc/resolv.conf
Radhika Chippada [Mon, 23 Mar 2015 16:11:42 +0000 (12:11 -0400)]
3762: create NewWorkQueue instances of pullq and trashq in handers_test and remove this logic from handlers.
it is expected that keepstore or the tests will create these objects and handlers should not have to.
Radhika Chippada [Mon, 23 Mar 2015 16:01:05 +0000 (12:01 -0400)]
3762: undo the api server discovery document update. trash worker can instead use permission_ttl in place of defaultTrashLifetime because these two will be the same.
Brett Smith [Fri, 20 Mar 2015 21:16:43 +0000 (17:16 -0400)]
5319: Bound search in collection PDH fix migration.
Only search collections that exist when the migration begins. This
helps avoid an infinite loop where we yield a bad collection, it gets
fixed a new replacement is created, and then we find and yield the
replacement… Refs #5319.
Radhika Chippada [Fri, 20 Mar 2015 18:30:35 +0000 (14:30 -0400)]
5375: improved mime_types initializer. enhance collections_helper to use mime_type sub_type instead of relying on suffix.
update config param name, value, and comment. add .seq, which is another supported extension of fasta to test.
Brett Smith [Wed, 18 Mar 2015 14:44:18 +0000 (10:44 -0400)]
5319: Improve collection PDH fix performance with LIKE searches.
PostgreSQL regexp searches use a lot of RAM, and these queries run out
of RAM on qr1hi. Prefer LIKE queries, which use less RAM and are more
portable. We have to do multiple searches, but that's life.
Tom Clegg [Thu, 19 Mar 2015 22:12:21 +0000 (18:12 -0400)]
5276: Reveal and update the log graph as soon as the first data point
arrives, rather than waiting for the redraw timer.
Return an empty hover tooltip for the placeholder data point. (The
placeholder series is only added when the graph is empty and hideHover
is true, but it doesn't get deleted later when hideHover goes false.)
Render the graph in a show() callback to ensure the div is visible
when Morris creates its SVG element: otherwise the SVG can end up
being created with height=1px. This addresses bugs like "graph doesn't
show up sometimes" and "data point hover tooltips show up, but there's
no graph".
Peter Amstutz [Wed, 18 Mar 2015 16:23:21 +0000 (12:23 -0400)]
5500: Add SLURM "Communication connection failure" to pattern of temporary node
failures. "pip install" failure returns temporary error status (111) so the
task can be retried.
Radhika Chippada [Wed, 18 Mar 2015 14:04:29 +0000 (10:04 -0400)]
5375: after much hair pulling, found the syntax to replace MIME::Types.add(MIME::Type.from_array... since from_array is deprecated; now using MIME::Types.add(MIME::Type.new...
Radhika Chippada [Wed, 18 Mar 2015 13:38:26 +0000 (09:38 -0400)]
5383: Add back Time.parse(). Without it the value returned would be of the format 2015-03-18 13:37:11 UTC,
and with Time.parse it would be 2015-03-18 09:37:11 -0400, which is the same as Time.now.
projects / arvados.git / log