Tom Clegg [Tue, 2 Apr 2019 17:28:10 +0000 (13:28 -0400)]
Merge branch '15044-test-fixes'
closes #15044
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 2 Apr 2019 17:24:45 +0000 (13:24 -0400)]
15044: Sanity-check test services when bringing them up.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 2 Apr 2019 14:20:45 +0000 (10:20 -0400)]
15044: Require newer mocha.
Without this, old dev environments will not necessarily support the
non-deprecated usage (require 'mocha/minitest').
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 1 Apr 2019 18:58:40 +0000 (14:58 -0400)]
Merge branch 'arvbox-cert-docs' no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 1 Apr 2019 16:28:12 +0000 (12:28 -0400)]
Update arvbox docs to describe how to install root cert
Remove slurm from arvbox
Arvbox cluster ids now always start with 'x' to be consistent with
cluster identifier guidelines for "experimental/local-only/private clusters"
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 1 Apr 2019 15:16:58 +0000 (11:16 -0400)]
Merge branch '14758-keepproxy-panic'
fixes #14758
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 1 Apr 2019 14:40:43 +0000 (10:40 -0400)]
14758: Fix panic on error reading request body.
The deferred inline func panics if status != 200 && err == nil.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 1 Apr 2019 15:08:53 +0000 (11:08 -0400)]
Merge branch '15050-limit-cdl-containers' closes #15050
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Sun, 31 Mar 2019 19:25:11 +0000 (15:25 -0400)]
Add another nil check to Azure driver.
refs #15007
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 29 Mar 2019 20:27:04 +0000 (16:27 -0400)]
15050: After waking up, check if the container was cancelled
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 29 Mar 2019 19:22:44 +0000 (15:22 -0400)]
15044: Fix sensitivity to group existence on the testing host.
Also fix some ruby warnings.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 29 Mar 2019 18:28:01 +0000 (14:28 -0400)]
15050: Need to make sure to raise the semaphore when we're done
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 29 Mar 2019 18:06:22 +0000 (14:06 -0400)]
15050: Limit number of containers that crunch-dispatch-local runs at a time
So I can do some testing with submitting a huge number of containers
and not melt my machine.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 29 Mar 2019 17:36:51 +0000 (13:36 -0400)]
15044: Don't kill run-tests's keepproxy server in sdk/python tests.
This was causing an apps/workbench test
(CollectionUploadTest#test_Upload_non-empty_files) to fail when
running after sdk/python tests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 29 Mar 2019 15:44:51 +0000 (11:44 -0400)]
Fix assigning APIHost in NewClientFromConfig refs #15045
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 28 Mar 2019 20:21:26 +0000 (16:21 -0400)]
15044: Specify test database collation.
apps/workbench/test/controllers/projects_controller_test.rb:546 fails
with other collations.
Remove obsolete websocket comment.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 28 Mar 2019 20:01:28 +0000 (16:01 -0400)]
15044: Fix unnecessarily unsafe yaml load.
...and eliminate the associated warnings in test logs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 28 Mar 2019 19:58:10 +0000 (15:58 -0400)]
15044: Fix workbench test args in interactive mode.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 28 Mar 2019 18:58:10 +0000 (14:58 -0400)]
15044: Improve error reporting in test case.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 28 Mar 2019 17:27:52 +0000 (13:27 -0400)]
15044: Listen on localhost instead of default dual-stack [::].
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 28 Mar 2019 15:12:44 +0000 (11:12 -0400)]
15044: Test gofmt as a separate suite, instead of refusing to run Go tests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 28 Mar 2019 18:12:37 +0000 (14:12 -0400)]
15044: Always use the en_US.UTF-8 locale. Add sanity check.
Some tests are sensitive to charset and collation.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 28 Mar 2019 14:37:13 +0000 (10:37 -0400)]
15044: Fix error messages.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 27 Mar 2019 20:46:04 +0000 (16:46 -0400)]
15044: Fix interactive command handling.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 27 Mar 2019 20:42:25 +0000 (16:42 -0400)]
15044: Override unusable nginx defaults. Test nginx startup success.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 28 Mar 2019 17:44:05 +0000 (13:44 -0400)]
Merge branch '14998-hoststat-total'
fixes #14998
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 19 Mar 2019 19:49:49 +0000 (15:49 -0400)]
14998: Report total_* (hierarchy) stats if available.
Otherwise, host stats only include the root cgroup.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 28 Mar 2019 16:56:44 +0000 (12:56 -0400)]
prepare.py in fed tests uses default python refs #15040
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 28 Mar 2019 14:17:50 +0000 (10:17 -0400)]
run prepare.py in fed tests in docker container refs #15040
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Wed, 27 Mar 2019 20:34:36 +0000 (16:34 -0400)]
run-tests.sh: don't prepopulate cmd if running in an emacs buffer.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Wed, 27 Mar 2019 20:04:05 +0000 (16:04 -0400)]
test mode creates certificate so that setting up SSO can succeed
also added "arvbox update"
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Wed, 27 Mar 2019 15:15:15 +0000 (11:15 -0400)]
Accept :py3 modifier for any Python suite in interactive mode.
(even ones that aren't normally run with python3 by jenkins)
refs #14939
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Fernando Monserrat [Tue, 26 Mar 2019 20:29:45 +0000 (17:29 -0300)]
no issue # Remove jessie-updates from sources.list as it is no longer supported
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Peter Amstutz [Tue, 26 Mar 2019 20:09:31 +0000 (16:09 -0400)]
arvbox nginx redirects http to https
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 26 Mar 2019 14:28:19 +0000 (10:28 -0400)]
Merge branch '14807-prod-blockers'
refs #14807
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 25 Mar 2019 14:47:37 +0000 (10:47 -0400)]
14807: Move "fallback to ARVADOS_*" logic out to lib/service.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 22 Mar 2019 20:20:29 +0000 (16:20 -0400)]
14807: Add lib/service test.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 22 Mar 2019 19:25:47 +0000 (15:25 -0400)]
14807: Fix go vet warnings about %s args.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 22 Mar 2019 18:44:03 +0000 (14:44 -0400)]
14807: Pass token to service handlers explicitly, not via context.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 21 Mar 2019 18:47:53 +0000 (14:47 -0400)]
14807: Refuse to create instance with AddedScratch>0.
The resulting VM would be the wrong size because dynamically attached
scratch space is not implemented.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 21 Mar 2019 18:36:29 +0000 (14:36 -0400)]
14807: Load API host/token from cluster config if present.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 21 Mar 2019 20:55:00 +0000 (16:55 -0400)]
Merge branch '15007-azure-panic'
fixes #15007
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 21 Mar 2019 20:54:49 +0000 (16:54 -0400)]
15007: Fix crash when Azure nic has IP config but no IP address.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 21 Mar 2019 20:50:32 +0000 (16:50 -0400)]
Merge branch '14807-prod-blockers'
refs #14807
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Morris [Thu, 21 Mar 2019 20:02:20 +0000 (16:02 -0400)]
Merge branch '14451-crunchstat-summary-cache-ram'
Fix three small crunchstat-summary issues:
- Use default of 1 if no cores requested. fixes #12026
- Don't recommend RAM or CPU changes based on zero usage. fixes #10570
- Remove extra MB (2**20) factor in Keep cache recommendation. Fixes #14451
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Tom Morris [Fri, 15 Mar 2019 05:11:59 +0000 (01:11 -0400)]
Improve wording with direction of recommendation change.
No issue.
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Tom Morris [Fri, 15 Mar 2019 04:47:38 +0000 (00:47 -0400)]
Use default of 1 if no cores requested. refs #12026
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Tom Morris [Fri, 15 Mar 2019 04:10:06 +0000 (00:10 -0400)]
Don't recommend RAM or CPU changes based on zero usage. refs #10570
Never recommend 0 MB RAM. If CPU usage is zero, don't make any
CPU recommendations.
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Tom Morris [Fri, 15 Mar 2019 04:03:59 +0000 (00:03 -0400)]
Fix Keep cache recommendation calculation.
Remove extra MB (2**20) factor. Refs #14451
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Tom Morris [Fri, 15 Mar 2019 02:11:45 +0000 (22:11 -0400)]
Spell MB consistently.
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Eric Biagiotti [Thu, 21 Mar 2019 19:52:26 +0000 (15:52 -0400)]
Merge branch '14645-fuse-operations-reporting'
refs #14645
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Morris [Thu, 21 Mar 2019 19:47:54 +0000 (15:47 -0400)]
Merge branch '14939-crunchstat-summary-python3'
Fixes #14939
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Tom Morris [Thu, 14 Mar 2019 22:47:20 +0000 (18:47 -0400)]
Resolve deprecation warnings
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Tom Morris [Thu, 14 Mar 2019 22:30:52 +0000 (18:30 -0400)]
Fix resource leak warned by Python 3
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Tom Morris [Wed, 13 Mar 2019 23:33:03 +0000 (19:33 -0400)]
Add crunchstat-summary to Python 3 tests. refs #14939
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Tom Morris [Wed, 13 Mar 2019 23:26:00 +0000 (19:26 -0400)]
Fix test Python 3 integer divide difference.
Use float for both Python 2 & 3 like the rest of the metrics.
refs #14393
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Tom Morris [Fri, 8 Mar 2019 23:40:24 +0000 (18:40 -0500)]
Update crunchstat-summary to Python 3. Refs #14939
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Tom Clegg [Thu, 21 Mar 2019 18:12:54 +0000 (14:12 -0400)]
14807: Allow some fake nodes to remain unbroken.
If every fake node hits a fake failure mode in 200-400 ms, throughput
can fall below 20 containers per second and fail the test.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Thu, 21 Mar 2019 18:03:16 +0000 (14:03 -0400)]
Merge remote-tracking branch 'origin/master' into 14645-fuse-operations-reporting
refs #14645
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 21 Mar 2019 14:49:31 +0000 (10:49 -0400)]
14645: Updates crunchstat format for fuse ops
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Lucas Di Pentima [Wed, 20 Mar 2019 20:17:07 +0000 (17:17 -0300)]
Merge branch '14873-google-api-client-update'
Refs #14873
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Wed, 20 Mar 2019 05:50:10 +0000 (01:50 -0400)]
14807: Give up if initial keep services list isn't loaded in 60s.
Otherwise, MakeKeepClient blocks forever when ARVADOS_* env vars are
bad.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 19 Mar 2019 21:02:05 +0000 (17:02 -0400)]
14807: Report queue metrics.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 19 Mar 2019 17:40:10 +0000 (13:40 -0400)]
14807: Add "kill instance" management API.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 18 Mar 2019 21:27:40 +0000 (17:27 -0400)]
14807: Configurable rate limit for cloud provider API calls.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 18 Mar 2019 20:32:58 +0000 (16:32 -0400)]
14807: Drain instances that crunch-run reports broken.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Mar 2019 19:24:02 +0000 (15:24 -0400)]
Merge branch '14807-escalate-sigterm'
refs #14807
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Mar 2019 19:20:57 +0000 (15:20 -0400)]
14807: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Mar 2019 19:20:38 +0000 (15:20 -0400)]
14807: Tweak log message.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Mar 2019 18:07:06 +0000 (14:07 -0400)]
Merge branch '14947-run-tests-interactive'
closes #14947
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Mar 2019 17:41:35 +0000 (13:41 -0400)]
14947: Ignore --only / --skip args in interactive mode.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 20 Mar 2019 17:39:03 +0000 (14:39 -0300)]
14873: Updates arvados & arvados-cli gems dependency on google-api-client.
Start using our own fork arvados-google-api-client that ask for activesupport
version <5.1 so that it doesn't block the rails 5 upgrade.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Wed, 20 Mar 2019 17:37:28 +0000 (13:37 -0400)]
14947: Fix controller install in deps.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Mar 2019 13:28:24 +0000 (09:28 -0400)]
14947: Accept test suite options in interactive mode.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Tue, 19 Mar 2019 20:27:00 +0000 (16:27 -0400)]
14645: Adds op counts to reporting
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Tue, 19 Mar 2019 20:23:55 +0000 (16:23 -0400)]
14947: Install controller (cmd/arvados-server) for integration tests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 19 Mar 2019 17:28:39 +0000 (13:28 -0400)]
14807: Don't send SIGKILL to crunch-run processes.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Tue, 19 Mar 2019 17:26:26 +0000 (13:26 -0400)]
14645: Adds individual ops time output
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Tue, 19 Mar 2019 15:57:32 +0000 (11:57 -0400)]
14807: Add comments to "error indicates success" code.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 19 Mar 2019 14:30:36 +0000 (10:30 -0400)]
14947: Suggest "install deps" as first interactive command.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 18 Mar 2019 20:13:35 +0000 (16:13 -0400)]
Move back arvbox version of nodejs to fix composer compile issue
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 18 Mar 2019 19:16:25 +0000 (15:16 -0400)]
14807: Update tests to new worker/pool interface.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 18 Mar 2019 19:08:19 +0000 (15:08 -0400)]
14807: Lengthen kill delays in stub driver to test term-kill-drain.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 18 Mar 2019 18:43:31 +0000 (14:43 -0400)]
Merge branch '14322-cwl-uuid-input' refs #14322
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 18 Mar 2019 18:04:19 +0000 (14:04 -0400)]
14322: Tweak JSON_KEEP_LOCATOR_REGEXP and comment
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 18 Mar 2019 15:09:09 +0000 (11:09 -0400)]
14807: Escalate sigterm->sigkill->drain instance.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 18 Mar 2019 15:44:19 +0000 (11:44 -0400)]
14807: Fail test if a container gets run twice.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 18 Mar 2019 15:44:07 +0000 (11:44 -0400)]
14807: Fix unreliable test.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 18 Mar 2019 15:11:56 +0000 (11:11 -0400)]
Merge branch '14977-kill-if-not-in-queue'
fixes #14977
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 18 Mar 2019 13:42:27 +0000 (09:42 -0400)]
14977: Re-order statements for clarity.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 15 Mar 2019 20:19:51 +0000 (16:19 -0400)]
14977: Don't try fixStaleLocks until worker pool state is loaded.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 15 Mar 2019 20:11:48 +0000 (16:11 -0400)]
14977: Kill containers that don't exist according to controller.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 15 Mar 2019 19:21:39 +0000 (15:21 -0400)]
14977: Drop containers when the controller says they don't exist.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 15 Mar 2019 14:54:59 +0000 (10:54 -0400)]
14322: Fix noisy unicode logging error in tests, add comments
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Mar 2019 21:30:57 +0000 (17:30 -0400)]
14322: Add missing test files
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Mar 2019 21:26:07 +0000 (17:26 -0400)]
14322: Workbench links collection uuids in workflow inputs
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Mar 2019 21:20:22 +0000 (17:20 -0400)]
14322: Update comment on bwa-mem-input-mixed.yml
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Mar 2019 20:40:33 +0000 (16:40 -0400)]
14322: Add additional example input files
* with uuids
* with both portable data hashes and uuids
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Mar 2019 20:19:37 +0000 (16:19 -0400)]
14322: Tweak workbench support from manual testing
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Mar 2019 19:52:20 +0000 (15:52 -0400)]
14322: Update workbench to use new collectionUUID
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
projects / arvados.git / log