Peter Amstutz [Mon, 13 Apr 2020 14:42:47 +0000 (10:42 -0400)]
Merge branch '16263-logincluster-user-list-fix' refs #16263
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 13 Apr 2020 14:25:11 +0000 (10:25 -0400)]
16263: Add test for BypassFederation
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Ward Vandewege [Fri, 10 Apr 2020 12:56:56 +0000 (08:56 -0400)]
Fix tests.
refs #16326
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>
Ward Vandewege [Thu, 9 Apr 2020 22:29:13 +0000 (18:29 -0400)]
Merge branch '16326-doc-and-keepstore-update'
refs #16326
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>
Ward Vandewege [Thu, 9 Apr 2020 21:53:31 +0000 (17:53 -0400)]
documentation: update descriptions for MaxKeepBlobBuffers and MaxConcurrentRequests
keepstore: MaxConcurrentRequests set to zero should mean no limit
refs #16326
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>
Tom Clegg [Thu, 9 Apr 2020 20:58:36 +0000 (16:58 -0400)]
Warn if MaxKeepBlobBuffers > MaxConcurrentRequests.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 8 Apr 2020 14:11:23 +0000 (10:11 -0400)]
Merge branch '16212-pam-login'
refs #16212
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 7 Apr 2020 21:26:46 +0000 (17:26 -0400)]
16212: Populate all api_client_auth fields.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 7 Apr 2020 19:25:16 +0000 (15:25 -0400)]
Merge branch '16053-install-deps'
refs #16053
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 7 Apr 2020 14:32:48 +0000 (10:32 -0400)]
16053: Avoid using host's tmp/cache dir in railsapi.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 6 Apr 2020 19:54:34 +0000 (15:54 -0400)]
Merge branch '16217-ws-metrics'
refs #16217
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Lucas Di Pentima [Mon, 6 Apr 2020 14:01:18 +0000 (11:01 -0300)]
16263: Pulls from official git repo when running federation tests.
This is helpful to ask for specific branches that aren't published on github.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Tom Clegg [Thu, 2 Apr 2020 15:33:46 +0000 (11:33 -0400)]
Merge branch '16270-instance-type'
fixes #16270
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Thu, 2 Apr 2020 14:52:44 +0000 (10:52 -0400)]
16263: User migration test also checks federated user behavior
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Wed, 1 Apr 2020 20:44:02 +0000 (16:44 -0400)]
16270: Fill in missing scratch fields on InstanceType entries.
Previously they were being filled in correctly when written as an
array in the config file, but not when written as a map.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 1 Apr 2020 17:42:43 +0000 (13:42 -0400)]
16217: Restore http.Hijacker capability to wrapped ResponseWriter.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 1 Apr 2020 17:42:08 +0000 (13:42 -0400)]
16217: Fix test (satisfy additional handler interface).
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 1 Apr 2020 15:59:06 +0000 (11:59 -0400)]
16217: Update startup scripts to run "arvados-server ws".
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 1 Apr 2020 15:50:03 +0000 (11:50 -0400)]
16212: Return error for users/authenticate endpoint in SSO mode.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 1 Apr 2020 15:49:16 +0000 (11:49 -0400)]
16212: Don't forward users/authenticate to Rails in legacy mode.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Wed, 1 Apr 2020 01:03:42 +0000 (21:03 -0400)]
16263: Tweak federation tests, use CWL 1.1
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 31 Mar 2020 21:42:03 +0000 (17:42 -0400)]
16263: Add bypass_federation test
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 31 Mar 2020 21:16:57 +0000 (17:16 -0400)]
16263: Fix no_federation -> bypass_federation in boolParms
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 31 Mar 2020 21:12:31 +0000 (17:12 -0400)]
16263: Fix only_admin_can_bypass_federation
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Tue, 31 Mar 2020 20:55:16 +0000 (16:55 -0400)]
16217: Update boot command to run ws via arvados-server.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 31 Mar 2020 20:51:35 +0000 (16:51 -0400)]
16217: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Tue, 31 Mar 2020 20:45:49 +0000 (16:45 -0400)]
16263: Missed rename
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 31 Mar 2020 20:33:27 +0000 (16:33 -0400)]
16263: Rename no_federation -> bypass_federation
Enforce if bypass_federation is true that user is admin.
Update API revision and make federation migrate check for it.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 31 Mar 2020 18:42:46 +0000 (14:42 -0400)]
16263: Add no_federation to user update
We might agree on a different API but try this and see if it helps
pass the test.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Tue, 31 Mar 2020 17:52:23 +0000 (13:52 -0400)]
16053: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 31 Mar 2020 17:51:31 +0000 (13:51 -0400)]
16053: Error out on unimplemented install in production mode.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 31 Mar 2020 17:11:17 +0000 (13:11 -0400)]
16212: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 31 Mar 2020 17:10:06 +0000 (13:10 -0400)]
16212: Upate generated default config.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 31 Mar 2020 17:08:32 +0000 (13:08 -0400)]
16212: Fix propagation of logout redirect target.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 31 Mar 2020 15:27:01 +0000 (11:27 -0400)]
16212: Add clues/details to authentication error messages.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 31 Mar 2020 15:26:01 +0000 (11:26 -0400)]
16212: Make test timeout more predictable by pulling image first.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 31 Mar 2020 14:32:17 +0000 (10:32 -0400)]
16212: Ensure added user doesn't prevent subsequent database reset.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Tue, 31 Mar 2020 02:30:10 +0000 (22:30 -0400)]
16263: local_user_list -> no_federation in boolParams
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 31 Mar 2020 02:14:23 +0000 (22:14 -0400)]
16263: Generalize "local_user_list" flag to "no_federation"
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Mon, 30 Mar 2020 21:26:40 +0000 (17:26 -0400)]
16212: Disallow overriding HTTP method on GET requests.
Removes an opportunity to circumvent CORS restrictions.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 30 Mar 2020 21:26:22 +0000 (17:26 -0400)]
16212: Fix wrong API endpoint for users/batch_update.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 30 Mar 2020 21:26:13 +0000 (17:26 -0400)]
16212: Move user/pass authentication to its own endpoint.
Overloading the /login endpoint turns out to be too awkward: method,
CORS permissions, and response type are all different.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Mon, 30 Mar 2020 21:12:17 +0000 (17:12 -0400)]
16263: UserMerge shouldn't be federated
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 30 Mar 2020 18:50:06 +0000 (14:50 -0400)]
16263: Fix omitempty placement
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 30 Mar 2020 18:43:36 +0000 (14:43 -0400)]
16263: Add omitempty to GetOptions
Don't try to migrate if activate_remote_user fails.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Mon, 30 Mar 2020 16:44:53 +0000 (12:44 -0400)]
16212: Allow X-Http-Method-Override header in CORS requests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Sat, 28 Mar 2020 01:36:09 +0000 (21:36 -0400)]
16263: Add local_user_list to boolParams
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 27 Mar 2020 21:08:48 +0000 (17:08 -0400)]
16263: Add local_user_list flag to bypass LoginCluster behavior
Required by federation migrate script.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Lucas Di Pentima [Fri, 27 Mar 2020 15:04:07 +0000 (12:04 -0300)]
Merge branch '16265-security-updates'
Closes #16265
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Fri, 27 Mar 2020 14:21:36 +0000 (11:21 -0300)]
Merge branch '16266-wb1-xss-fix'
Closes #16266
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Tom Clegg [Thu, 26 Mar 2020 18:31:18 +0000 (14:31 -0400)]
16212: Return 401 or 500 instead of 200 on authentication failure.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Lucas Di Pentima [Thu, 26 Mar 2020 17:02:40 +0000 (14:02 -0300)]
16265: Merge branch 'dependabot/bundler/services/api/nokogiri-1.10.8' into 16265-security-updates
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 26 Mar 2020 17:02:24 +0000 (14:02 -0300)]
Merge branch '16265-security-updates' into dependabot/bundler/services/api/nokogiri-1.10.8
Lucas Di Pentima [Thu, 26 Mar 2020 16:59:58 +0000 (13:59 -0300)]
16265: Merge branch 'dependabot/bundler/apps/workbench/loofah-2.3.1' into 16265-security-updates
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 26 Mar 2020 16:59:19 +0000 (13:59 -0300)]
Merge branch '16265-security-updates' into dependabot/bundler/apps/workbench/loofah-2.3.1
Lucas Di Pentima [Thu, 26 Mar 2020 16:56:37 +0000 (13:56 -0300)]
16265: Merge branch 'dependabot/bundler/apps/workbench/nokogiri-1.10.8' into 16265-security-updates
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 26 Mar 2020 16:56:18 +0000 (13:56 -0300)]
Merge branch '16265-security-updates' into dependabot/bundler/apps/workbench/nokogiri-1.10.8
Lucas Di Pentima [Thu, 26 Mar 2020 16:54:26 +0000 (13:54 -0300)]
16265: Merge branch 'dependabot/bundler/apps/workbench/rake-13.0.1' into 16265-security-updates
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 26 Mar 2020 16:54:07 +0000 (13:54 -0300)]
Merge branch '16265-security-updates' into dependabot/bundler/apps/workbench/rake-13.0.1
Lucas Di Pentima [Thu, 26 Mar 2020 16:46:52 +0000 (13:46 -0300)]
16265: Merge branch 'dependabot/bundler/services/api/rake-13.0.1' into 16265-security-updates
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 26 Mar 2020 16:45:27 +0000 (13:45 -0300)]
Merge branch '16265-security-updates' into dependabot/bundler/services/api/rake-13.0.1
Lucas Di Pentima [Mon, 23 Mar 2020 21:07:56 +0000 (18:07 -0300)]
16266: Applies monkeypatch to fix CVE-2020-5267 on workbench1.
As adviced on https://github.com/advisories/GHSA-65cv-r6x7-79hv
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 26 Mar 2020 16:29:40 +0000 (13:29 -0300)]
16266: Adds tests exposing potential XSS vulnerability on escape_javascript()
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Tom Clegg [Thu, 26 Mar 2020 16:25:37 +0000 (12:25 -0400)]
16212: Build arvados-server binary for test.
On a dev system, the one in $GOPATH/bin might be a different version.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 26 Mar 2020 15:24:31 +0000 (11:24 -0400)]
16217: Update docs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Lucas Di Pentima [Thu, 26 Mar 2020 14:46:34 +0000 (11:46 -0300)]
16263: Decodes JSON numbers as strings instead of float64.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Tom Clegg [Wed, 25 Mar 2020 20:54:59 +0000 (16:54 -0400)]
16217: Remove old status/debug endpoints, test /metrics instead.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 25 Mar 2020 20:23:41 +0000 (16:23 -0400)]
16217: Add prometheus metrics.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Lucas Di Pentima [Wed, 25 Mar 2020 19:35:18 +0000 (16:35 -0300)]
16263: Adds unit test case confirming 'limit' bug.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Tom Clegg [Wed, 25 Mar 2020 18:57:42 +0000 (14:57 -0400)]
16053: Specify utf8 encoding when creating databases.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Wed, 25 Mar 2020 18:35:51 +0000 (14:35 -0400)]
Merge branch '16138-fix-arv-copy' refs #16138
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 25 Mar 2020 17:53:25 +0000 (13:53 -0400)]
Merge branch 'Majewski/feature/links-client' refs #16260
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Wed, 25 Mar 2020 15:28:25 +0000 (11:28 -0400)]
16217: Exit service command if the service handler fails.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 25 Mar 2020 15:00:03 +0000 (11:00 -0400)]
16217: Refactor ws to use lib/service.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Lucas Di Pentima [Wed, 25 Mar 2020 14:26:55 +0000 (11:26 -0300)]
16263: Adds test exposing a bug when using 'limit' with the max int64 value.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 24 Mar 2020 20:39:01 +0000 (17:39 -0300)]
16263: Bool filter bug fix.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 24 Mar 2020 21:03:34 +0000 (18:03 -0300)]
16263: Adds test exposing a bug on filter unmarshalling.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Tom Clegg [Tue, 24 Mar 2020 19:40:59 +0000 (15:40 -0400)]
16053: Add ca-certificates to deps.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 24 Mar 2020 16:12:30 +0000 (12:12 -0400)]
16053: Add example script for installing from scratch.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 24 Mar 2020 16:03:36 +0000 (12:03 -0400)]
16053: Add scripts for running tests in docker.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Tue, 24 Mar 2020 19:35:38 +0000 (15:35 -0400)]
16138: Remove additional/code references to copying pipelines
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 24 Mar 2020 17:23:01 +0000 (13:23 -0400)]
Remove python2 arvados-cwl-runner package build, only python3
refs #12409
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Mon, 23 Mar 2020 21:40:29 +0000 (17:40 -0400)]
16053: Fix check for installed bundler versions.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 23 Mar 2020 20:30:55 +0000 (16:30 -0400)]
16053: Fix test for already-installed en_US.UTF-8 locale.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 23 Mar 2020 19:21:44 +0000 (15:21 -0400)]
15063: Fix tests to accommodate curl speed check granularity.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Lucas Di Pentima [Mon, 23 Mar 2020 19:20:41 +0000 (16:20 -0300)]
16263: Makes gofmt happy.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 23 Mar 2020 18:32:59 +0000 (15:32 -0300)]
16263: Don't cache modified_by_*_uuid fields when using LoginCluster.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Tom Clegg [Mon, 23 Mar 2020 18:19:10 +0000 (14:19 -0400)]
16053: Fix keepstore tests that fail when running as root.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 23 Mar 2020 18:02:57 +0000 (14:02 -0400)]
16053: Upgrade mockito for JDK 11 compatibility.
Fixes:
17:19:59.486 [DEBUG] [TestEventLogger] org.arvados.client.logic.keep.FileDownloaderTest STARTED
17:19:59.573 [DEBUG] [TestEventLogger]
17:19:59.573 [DEBUG] [TestEventLogger] org.arvados.client.logic.keep.FileDownloaderTest > classMethod STARTED
17:19:59.593 [DEBUG] [TestEventLogger]
17:19:59.594 [DEBUG] [TestEventLogger] org.arvados.client.logic.keep.FileDownloaderTest > classMethod FAILED
17:19:59.594 [DEBUG] [TestEventLogger] org.mockito.exceptions.base.MockitoException:
17:19:59.594 [DEBUG] [TestEventLogger] Mockito cannot mock this class: class org.arvados.client.api.client.CollectionsApiClient.
17:19:59.594 [DEBUG] [TestEventLogger]
17:19:59.594 [DEBUG] [TestEventLogger] If you're not sure why you're getting this error, please report to the mailing list.
17:19:59.594 [DEBUG] [TestEventLogger]
17:19:59.594 [DEBUG] [TestEventLogger]
17:19:59.594 [DEBUG] [TestEventLogger] Java : 11
17:19:59.595 [DEBUG] [TestEventLogger] JVM vendor name : Debian
17:19:59.595 [DEBUG] [TestEventLogger] JVM vendor version : 11.0.6+10-post-Debian-1deb10u1
17:19:59.595 [DEBUG] [TestEventLogger] JVM name : OpenJDK 64-Bit Server VM
17:19:59.595 [DEBUG] [TestEventLogger] JVM version : 11.0.6+10-post-Debian-1deb10u1
17:19:59.595 [DEBUG] [TestEventLogger] JVM info : mixed mode, sharing
17:19:59.595 [DEBUG] [TestEventLogger] OS name : Linux
17:19:59.595 [DEBUG] [TestEventLogger] OS version : 4.9.0-12-amd64
17:19:59.595 [DEBUG] [TestEventLogger]
17:19:59.595 [DEBUG] [TestEventLogger]
17:19:59.595 [DEBUG] [TestEventLogger] You are seeing this disclaimer because Mockito is configured to create inlined mocks.
17:19:59.595 [DEBUG] [TestEventLogger] You can learn about inline mocks and their limitations under item #39 of the Mockito class javadoc.
17:19:59.595 [DEBUG] [TestEventLogger]
17:19:59.595 [DEBUG] [TestEventLogger] Underlying exception : org.mockito.exceptions.base.MockitoException: Could not modify all classes [class java.lang.Object, class org.arvados.client.api.client.BaseApiClient, class org.arvados.client.api.client.CollectionsApiClient, class org.arvados.client.api.client.BaseStandardApiClient]
17:19:59.595 [DEBUG] [TestEventLogger] at org.mockito.internal.runners.DefaultInternalRunner$1.withBefores(DefaultInternalRunner.java:38)
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 23 Mar 2020 16:42:14 +0000 (12:42 -0400)]
16053: Pass along test args to gradle in java-v2 test suite.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 23 Mar 2020 16:39:37 +0000 (12:39 -0400)]
16053: Install java runtime and jdk.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Lucas Di Pentima [Mon, 23 Mar 2020 15:27:18 +0000 (12:27 -0300)]
16263: Adds nullify behavior to users's batch_update endpoint.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Peter Amstutz [Mon, 23 Mar 2020 15:00:07 +0000 (11:00 -0400)]
16138: Remove additional pipelines related code
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Fri, 20 Mar 2020 21:04:38 +0000 (17:04 -0400)]
16053: Install gradle.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Fri, 20 Mar 2020 19:47:00 +0000 (15:47 -0400)]
16138: whitelist fields for arv-copy
Also removed code for copying
PipelineTemplate/PipelineInstance (obsolete jobs API).
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Lucas Di Pentima [Thu, 19 Mar 2020 21:15:52 +0000 (18:15 -0300)]
16263: Assigns nil to select attributes when receiving empty values.
Controller may translate NULL values to "" on certain object string fields.
The same with integers, NULLs are converted to 0.
When controller retrieves objects from railsAPI and uses the data to create
or update objects, some of those fields should get converted back to NULL.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Tom Clegg [Thu, 19 Mar 2020 20:29:50 +0000 (16:29 -0400)]
16053: Fix warnings when installer cwd is not readable by postgres.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 19 Mar 2020 18:57:26 +0000 (14:57 -0400)]
16053: Fix permissions for test db user.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 19 Mar 2020 17:35:23 +0000 (13:35 -0400)]
16053: Run initdb, start postgresql, and add arvados user if needed.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 19 Mar 2020 17:34:57 +0000 (13:34 -0400)]
16053: Install all three needed versions of bundler.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
projects / arvados.git / log