Tom Clegg [Wed, 17 Jul 2013 18:26:21 +0000 (14:26 -0400)]
count files instead of specimens on dashboard
Tom Clegg [Wed, 17 Jul 2013 17:00:14 +0000 (13:00 -0400)]
count accessible objects instead of owned objects on dashboard
Tom Clegg [Wed, 17 Jul 2013 16:40:07 +0000 (12:40 -0400)]
fix "pipeline run" command
Tom Clegg [Wed, 17 Jul 2013 16:29:53 +0000 (12:29 -0400)]
fix pipeline component names
Tom Clegg [Wed, 17 Jul 2013 15:42:50 +0000 (11:42 -0400)]
use "nano" instead of pseudocode "edit"
Tom Clegg [Wed, 17 Jul 2013 08:52:44 +0000 (04:52 -0400)]
new dashboard content
Tom Clegg [Wed, 17 Jul 2013 07:36:21 +0000 (03:36 -0400)]
add new-pipeline tutorial
Tom Clegg [Wed, 17 Jul 2013 05:24:57 +0000 (01:24 -0400)]
fix command line parsing
Tom Clegg [Wed, 17 Jul 2013 04:41:55 +0000 (00:41 -0400)]
add "arv pipeline run" -> "arv-run-pipeline-instance" wrapper
Tom Clegg [Wed, 17 Jul 2013 04:35:11 +0000 (00:35 -0400)]
rename wh-run-pipeline-instance to arv-run-pipeline-instance
Tom Clegg [Wed, 17 Jul 2013 03:39:58 +0000 (23:39 -0400)]
link job and collection uuids to workbench pages
Tom Clegg [Wed, 17 Jul 2013 02:42:53 +0000 (22:42 -0400)]
strip extra newline
Tom Clegg [Wed, 17 Jul 2013 02:17:02 +0000 (22:17 -0400)]
add usr/local/arvados/src pythonpath
Tom Clegg [Wed, 17 Jul 2013 01:50:53 +0000 (21:50 -0400)]
fix namespace
Tom Clegg [Wed, 17 Jul 2013 01:50:36 +0000 (21:50 -0400)]
prepend to PYTHONPATH instead of replacing
Tom Clegg [Tue, 16 Jul 2013 23:20:58 +0000 (19:20 -0400)]
fix job dependencies -- grok arrays and hashes in script_parameters
Tom Clegg [Tue, 16 Jul 2013 23:19:54 +0000 (23:19 +0000)]
add collection-merge script
Tom Clegg [Tue, 16 Jul 2013 23:19:43 +0000 (23:19 +0000)]
add CollectionReader.manifest_text()
Tom Clegg [Tue, 16 Jul 2013 23:18:30 +0000 (23:18 +0000)]
comments
Tom Clegg [Tue, 16 Jul 2013 18:55:45 +0000 (14:55 -0400)]
tweak example templates
Tom Clegg [Mon, 15 Jul 2013 21:01:44 +0000 (17:01 -0400)]
add GATK VariantFiltration tutorial
Tom Clegg [Mon, 15 Jul 2013 21:00:53 +0000 (17:00 -0400)]
update git commit hash link target
Tom Clegg [Mon, 15 Jul 2013 20:37:54 +0000 (16:37 -0400)]
add "arv keep check"
Tom Clegg [Mon, 15 Jul 2013 16:03:40 +0000 (12:03 -0400)]
open up specimens page index and show pages
Tom Clegg [Thu, 11 Jul 2013 22:08:37 +0000 (18:08 -0400)]
link to "ssh access" doc page from "authorized keys" workbench page
Tom Clegg [Thu, 11 Jul 2013 22:07:47 +0000 (18:07 -0400)]
add piwik info to workbench install doc
Tom Clegg [Thu, 11 Jul 2013 15:56:14 +0000 (15:56 +0000)]
add GATK2 VariantFiltration example crunch script
Tom Clegg [Thu, 11 Jul 2013 15:50:54 +0000 (15:50 +0000)]
add transparent decompression option to util.collection_extract
Ward Vandewege [Thu, 11 Jul 2013 15:14:34 +0000 (11:14 -0400)]
Tweak arv keep wrapper a bit more. No more output rewriting, instead use
exec for performance. Support ls, get, put, and less.
Tom Clegg [Thu, 11 Jul 2013 04:04:12 +0000 (04:04 +0000)]
lazy check for # files actually retrieved
Tom Clegg [Thu, 11 Jul 2013 03:43:07 +0000 (03:43 +0000)]
add util functions, fix up tmp dirs
Tom Clegg [Thu, 11 Jul 2013 03:07:59 +0000 (23:07 -0400)]
add output & code notes to job tutorial
Tom Clegg [Thu, 11 Jul 2013 02:44:47 +0000 (22:44 -0400)]
remove extra newline
Ward Vandewege [Thu, 11 Jul 2013 01:08:27 +0000 (21:08 -0400)]
Add piwik support to workbench.
Ward Vandewege [Wed, 10 Jul 2013 22:02:25 +0000 (18:02 -0400)]
Add whls wrapper. This is a temporary hack. Not proud of it :/
Ward Vandewege [Wed, 10 Jul 2013 15:08:59 +0000 (11:08 -0400)]
Remove 'pre' from the gem version; otherwise we can't pull them in easily from puppet.
Ward Vandewege [Wed, 10 Jul 2013 14:40:38 +0000 (10:40 -0400)]
Merge branch 'master' of git.clinicalfuture.com:arvados
Ward Vandewege [Wed, 10 Jul 2013 14:40:18 +0000 (10:40 -0400)]
Changes for ruby sdk packaging as a gem.
Tom Clegg [Wed, 10 Jul 2013 14:33:40 +0000 (10:33 -0400)]
clarify monitoring jobs until success=True
Tom Clegg [Wed, 10 Jul 2013 14:03:40 +0000 (10:03 -0400)]
pipeline_templates and pipeline_instances are not admin-only
Tom Clegg [Wed, 10 Jul 2013 09:01:51 +0000 (05:01 -0400)]
hide expired and job-specific auth tokens from workbench list
Tom Clegg [Wed, 10 Jul 2013 08:34:42 +0000 (04:34 -0400)]
fix nil bugs
Tom Clegg [Wed, 10 Jul 2013 08:23:41 +0000 (04:23 -0400)]
extend pgp data tutorial
Tom Clegg [Wed, 10 Jul 2013 07:37:00 +0000 (03:37 -0400)]
fix is_locked_by reference
Tom Clegg [Wed, 10 Jul 2013 07:30:30 +0000 (03:30 -0400)]
fix is_locked_by reference
Tom Clegg [Wed, 10 Jul 2013 06:37:53 +0000 (02:37 -0400)]
use pattern as regexp
Tom Clegg [Wed, 10 Jul 2013 06:26:30 +0000 (02:26 -0400)]
update language on job intro page
Tom Clegg [Wed, 10 Jul 2013 06:16:14 +0000 (02:16 -0400)]
fix word wrap
Tom Clegg [Wed, 10 Jul 2013 06:15:26 +0000 (02:15 -0400)]
quote yaml title
Tom Clegg [Wed, 10 Jul 2013 04:52:17 +0000 (00:52 -0400)]
update uuids for pgp data example
Tom Clegg [Wed, 10 Jul 2013 03:58:23 +0000 (23:58 -0400)]
remove special group/show stuff
Tom Clegg [Wed, 10 Jul 2013 03:40:18 +0000 (23:40 -0400)]
restore uuid column
Tom Clegg [Wed, 10 Jul 2013 03:39:46 +0000 (23:39 -0400)]
remove special group/show stuff
Tom Clegg [Wed, 10 Jul 2013 00:07:26 +0000 (20:07 -0400)]
update provenance link conventions
Tom Clegg [Tue, 9 Jul 2013 23:06:25 +0000 (19:06 -0400)]
show provenance
Tom Clegg [Tue, 9 Jul 2013 22:32:57 +0000 (18:32 -0400)]
fix up collections index/show
Tom Clegg [Tue, 9 Jul 2013 21:39:57 +0000 (17:39 -0400)]
reword "change api endpoint to suit" reminder
Ward Vandewege [Mon, 8 Jul 2013 20:04:28 +0000 (16:04 -0400)]
Merge branch 'master' of git.clinicalfuture.com:arvados
Ward Vandewege [Mon, 8 Jul 2013 20:04:16 +0000 (16:04 -0400)]
Fix versoining number for arvados gem.
Tom Clegg [Mon, 8 Jul 2013 19:03:51 +0000 (15:03 -0400)]
update example collection hash
Tom Clegg [Mon, 8 Jul 2013 18:54:00 +0000 (14:54 -0400)]
rename more foreign uuid attributes
Tom Clegg [Mon, 8 Jul 2013 18:45:38 +0000 (14:45 -0400)]
document adding crunch user
Tom Clegg [Mon, 8 Jul 2013 18:32:29 +0000 (14:32 -0400)]
rename more foreign uuid attributes
Tom Clegg [Mon, 8 Jul 2013 18:18:43 +0000 (14:18 -0400)]
rename foreign uuid attributes
Ward Vandewege [Mon, 8 Jul 2013 17:57:01 +0000 (13:57 -0400)]
Add some more detail about arv's dependencies and how to install them.
Tom Clegg [Fri, 5 Jul 2013 20:24:00 +0000 (16:24 -0400)]
add identifier link to conventions list
Tom Clegg [Fri, 5 Jul 2013 20:12:35 +0000 (16:12 -0400)]
start pgp data tutorial
Tom Clegg [Mon, 1 Jul 2013 19:35:18 +0000 (15:35 -0400)]
fix inflections
Tom Clegg [Mon, 1 Jul 2013 19:08:54 +0000 (15:08 -0400)]
add repository usage example and doc link
Tom Clegg [Mon, 1 Jul 2013 18:48:52 +0000 (14:48 -0400)]
show login names and config instructions on VMs page
Tom Clegg [Mon, 1 Jul 2013 18:48:07 +0000 (14:48 -0400)]
restrict visible-because-references-me to permission and resource links
Tom Clegg [Mon, 1 Jul 2013 14:44:41 +0000 (10:44 -0400)]
update example configs
Tom Clegg [Fri, 28 Jun 2013 21:32:23 +0000 (17:32 -0400)]
fix tutorial bugs
Tom Clegg [Fri, 28 Jun 2013 16:31:10 +0000 (12:31 -0400)]
fix doc link
Tom Clegg [Fri, 28 Jun 2013 16:04:59 +0000 (12:04 -0400)]
point to doc.arvados.org tutorial if no local tutorials are set up
Tom Clegg [Fri, 28 Jun 2013 15:58:58 +0000 (11:58 -0400)]
remove stub pages
Tom Clegg [Fri, 28 Jun 2013 15:58:39 +0000 (11:58 -0400)]
add "first job" tutorial
Tom Clegg [Fri, 28 Jun 2013 15:45:32 +0000 (11:45 -0400)]
add Data menu
Tom Clegg [Fri, 28 Jun 2013 15:45:15 +0000 (11:45 -0400)]
collections does not need to be admin-only
Tom Clegg [Fri, 28 Jun 2013 15:34:54 +0000 (11:34 -0400)]
remove "add a new VM" button from non-admin VM index page
Tom Clegg [Fri, 28 Jun 2013 15:19:38 +0000 (11:19 -0400)]
more specific info about VMs page
Tom Clegg [Fri, 28 Jun 2013 15:15:16 +0000 (11:15 -0400)]
use the same API host for all examples
Tom Clegg [Fri, 28 Jun 2013 14:29:41 +0000 (10:29 -0400)]
update running and finished_at attributes at completion
Tom Clegg [Fri, 28 Jun 2013 14:29:04 +0000 (10:29 -0400)]
document redis dependency
Tom Clegg [Fri, 28 Jun 2013 14:28:43 +0000 (10:28 -0400)]
chdir out of supervise dir when starting job
Tom Clegg [Fri, 28 Jun 2013 05:42:14 +0000 (01:42 -0400)]
add pgp-survey-import
Tom Clegg [Fri, 28 Jun 2013 05:41:28 +0000 (01:41 -0400)]
add workbench favicon
Tom Clegg [Fri, 28 Jun 2013 02:17:23 +0000 (22:17 -0400)]
fix up default site name
Tom Clegg [Thu, 27 Jun 2013 20:06:46 +0000 (16:06 -0400)]
add pgp-survey-parse
Tom Clegg [Thu, 27 Jun 2013 20:06:32 +0000 (16:06 -0400)]
fixes and docs for testing crunch jobs locally
Tom Clegg [Thu, 27 Jun 2013 19:22:39 +0000 (15:22 -0400)]
fix human/humans inflection
Tom Clegg [Thu, 27 Jun 2013 18:52:43 +0000 (14:52 -0400)]
add Human resource
Tom Clegg [Thu, 27 Jun 2013 18:36:07 +0000 (14:36 -0400)]
add Admin menu with Users and Groups
Tom Clegg [Thu, 27 Jun 2013 18:24:53 +0000 (14:24 -0400)]
remove "create new api client authorization" button
Tom Clegg [Thu, 27 Jun 2013 17:40:44 +0000 (13:40 -0400)]
update dispatch docs
Tom Clegg [Thu, 27 Jun 2013 16:35:35 +0000 (12:35 -0400)]
fix editable + serialized-hash attributes
Tom Clegg [Thu, 27 Jun 2013 16:34:49 +0000 (12:34 -0400)]
fix active/admin editables
Tom Clegg [Thu, 27 Jun 2013 16:04:25 +0000 (12:04 -0400)]
fix editable User attributes
Tom Clegg [Thu, 27 Jun 2013 15:53:23 +0000 (11:53 -0400)]
add trait resource
Tom Clegg [Thu, 27 Jun 2013 15:21:01 +0000 (11:21 -0400)]
add util class
projects / arvados.git / log