Peter Amstutz [Mon, 20 May 2019 19:48:27 +0000 (15:48 -0400)]
Merge branch '15241-collection-input' refs #15241
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 20 May 2019 19:46:17 +0000 (15:46 -0400)]
15241: Fix input bare collection as directory
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Fri, 17 May 2019 17:31:29 +0000 (14:31 -0300)]
Merge branch '14988-wb-rails5-upgrade'
Closes #14988
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 17 May 2019 17:30:33 +0000 (14:30 -0300)]
Merge branch '15227-apiserver-properties-bugfix'
Closes #15227
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Fri, 17 May 2019 15:55:31 +0000 (11:55 -0400)]
Update the note about supported Python versions for Arv SDK.
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Fri, 17 May 2019 14:42:19 +0000 (11:42 -0300)]
14988: Restores debug message when accessing non-loaded attributes.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Fri, 17 May 2019 14:18:13 +0000 (10:18 -0400)]
Add user email and cancel button to federated user redirect page
refs #15061
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Fri, 17 May 2019 13:28:13 +0000 (10:28 -0300)]
14988: Fixes destroyed? method to return false on new records.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 17 May 2019 00:20:33 +0000 (21:20 -0300)]
15227: Fixes type checking on json attributes.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 17 May 2019 00:19:57 +0000 (21:19 -0300)]
15227: More tests to expose the bug.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Wed, 15 May 2019 21:05:55 +0000 (17:05 -0400)]
Merge branch '15232-blobttl-suffix'
fixes #15232
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 15 May 2019 20:25:01 +0000 (17:25 -0300)]
Syncs up generated config.
No issue #
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Wed, 15 May 2019 20:09:48 +0000 (16:09 -0400)]
Merge branch '15061-fed-migrate' refs #15061
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 15 May 2019 18:38:15 +0000 (14:38 -0400)]
15061: Code cleanup, improve validity checking & error handling
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Wed, 15 May 2019 18:50:24 +0000 (15:50 -0300)]
15227: Adds test exposing bug.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Wed, 15 May 2019 18:02:33 +0000 (14:02 -0400)]
15232: Fix type of Collections.BlobSigningTTL config key.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 15 May 2019 16:54:22 +0000 (13:54 -0300)]
Merge branch '15167-unlogged-attrs-api-docs'
Closes #15167
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Wed, 15 May 2019 14:59:46 +0000 (10:59 -0400)]
Merge branch '15003-preprocess-config'
refs #15003
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 15 May 2019 13:57:36 +0000 (09:57 -0400)]
15003: Merge branch 'master' into 15003-preprocess-config
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Ward Vandewege [Tue, 14 May 2019 21:33:33 +0000 (17:33 -0400)]
Reset the rails package iteration to 1
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Tue, 14 May 2019 21:30:04 +0000 (17:30 -0400)]
Merge branch '15200-fix-blobsigning-config-migration'
closes #15200
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Tue, 14 May 2019 21:16:28 +0000 (17:16 -0400)]
When specified in the api configuration,
permit_create_collection_with_unsigned_manifest: false
needs to be translated to
BlobSigning: true
refs #15200
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Tue, 14 May 2019 20:17:23 +0000 (16:17 -0400)]
15061: Add warning about clusters that are not in tokens file.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 14 May 2019 18:12:25 +0000 (14:12 -0400)]
15061: Check well-connectedness. Fix typos.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Tue, 14 May 2019 16:37:43 +0000 (12:37 -0400)]
Bump the rails package iteration to 9, for the packaging fix in commit
b4fabf39c7cb1c48a2ba09ba2f45da45b6c4574
refs #15225
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Tue, 14 May 2019 14:29:04 +0000 (11:29 -0300)]
14988: Fixes bootstrap import issue
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Tue, 14 May 2019 14:21:08 +0000 (10:21 -0400)]
Fix the api server package postinstall script to use `rake config:dump` to get a
value, rather than `rake config:check` which no longer produces output.
closes #15225
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Tue, 14 May 2019 14:15:50 +0000 (11:15 -0300)]
14988: Upgrades bootstrap-sass to deal with CVE-2019-8331.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 13 May 2019 14:41:38 +0000 (11:41 -0300)]
14988: Fixes pipeline instance controller's param handling.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Mon, 13 May 2019 14:00:47 +0000 (10:00 -0400)]
Add workbench2Url to discovery document refs #15064
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 13 May 2019 13:58:39 +0000 (09:58 -0400)]
Migrate arvbox api application.yml settings to config.yml
To set workbench2 url. refs #15064
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Mon, 13 May 2019 13:56:21 +0000 (10:56 -0300)]
14988: Fixes assert_equal param ordering for proper error messages.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 13 May 2019 12:25:01 +0000 (09:25 -0300)]
Merge branch 'master' into 14988-wb-rails5-upgrade
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Fri, 10 May 2019 20:36:39 +0000 (16:36 -0400)]
Log if client hangs up while waiting for unix volume Serialize lock.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 10 May 2019 20:07:47 +0000 (16:07 -0400)]
Remove extra \n from log.Printf formats
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 9 May 2019 20:57:08 +0000 (16:57 -0400)]
Merge branch '15061-fed-login' refs #15061
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 9 May 2019 19:25:23 +0000 (15:25 -0400)]
15061: Add documentation for using arv-federation-migrate
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 9 May 2019 14:59:56 +0000 (10:59 -0400)]
15061: Move federation migrate script into sdk
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 8 May 2019 21:25:06 +0000 (17:25 -0400)]
15061: add federation-migrate script
Produces a report, users can edit the report to choose which cluster
each user should belong to, then run the report back through to
perform the migration.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 9 May 2019 19:27:07 +0000 (15:27 -0400)]
15061: Add missing file
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 7 May 2019 22:00:57 +0000 (18:00 -0400)]
15061: Implement admin variant of user merge by uuid
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 7 May 2019 20:31:21 +0000 (16:31 -0400)]
15061: API support for linking local account to remote user
Adds page to login process to redirect user to log in to home cluster.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 6 May 2019 19:35:42 +0000 (15:35 -0400)]
15061: Correctly filter out "*" from RemoteClusters
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 9 May 2019 14:37:36 +0000 (10:37 -0400)]
Pin pykka < 2 for nodemanager no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Wed, 8 May 2019 21:50:26 +0000 (18:50 -0300)]
14988: Fixes merge conflict
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Wed, 8 May 2019 20:39:17 +0000 (16:39 -0400)]
Fix unit error in the node manager documentation for EC2.
refs #15199
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Fri, 3 May 2019 20:21:06 +0000 (16:21 -0400)]
arvbox crunch-run and certificate fixes
arvbox crunch-run change to -container-enable-networking=default
Previously was "always" which causes CWL tests that checked that
networking was disabled to fail.
arvbox root-cert creates file with .crt instead of .pem, because
that's the file extension update-ca-certificates looks for.
Add cluster id and timestamp to arvbox test certificate common name to
prevents collisions on the certificate subject.
Arvbox sets trusted api_client for workbench2.
refs #15028 refs #15061
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Wed, 8 May 2019 19:25:57 +0000 (16:25 -0300)]
Merge branch 'master' into 14988-wb-rails5-upgrade
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 8 May 2019 13:10:48 +0000 (10:10 -0300)]
14988: Fixes exception raising due to a change in rails5 behavior.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 8 May 2019 13:09:58 +0000 (10:09 -0300)]
14988: Adds empty subdir to test/ as it's required by rails.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 7 May 2019 20:26:33 +0000 (17:26 -0300)]
14988: Fixes .dup method behavior on ArvadosBase.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Tue, 7 May 2019 15:55:11 +0000 (11:55 -0400)]
Merge branch '15112-rerun-containers' refs #15112
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Tue, 7 May 2019 13:53:24 +0000 (10:53 -0300)]
14988: Fixes exception raising when logging out.
See: https://stackoverflow.com/a/
41266746
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 6 May 2019 20:56:00 +0000 (17:56 -0300)]
14988: Disables wiselinks gem. Testing if it's really needed.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 6 May 2019 20:52:20 +0000 (17:52 -0300)]
14988: Removes deprecation warning about rendering nothing.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 6 May 2019 20:12:30 +0000 (17:12 -0300)]
14988: Fixes anonymous config & token usage issues on tests.
After calling post/get it seems that the token is reset, so on tests with
multiple controller/api calls there were some problems with authentication.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 6 May 2019 18:08:25 +0000 (15:08 -0300)]
14988: Adds missing create!() method to ArvadosBase.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 6 May 2019 15:16:54 +0000 (12:16 -0300)]
14988: Fixes CSS syntax error on Jobs controller tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Mon, 6 May 2019 15:16:15 +0000 (11:16 -0400)]
15003: Merge branch 'master' into 15003-preprocess-config
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Mon, 6 May 2019 15:07:12 +0000 (12:07 -0300)]
14988: Fixes CSS syntax issue.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 6 May 2019 14:30:49 +0000 (11:30 -0300)]
14988: Fixes unit test by adding 'x-python' type to the preview-allowed list.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 6 May 2019 12:23:36 +0000 (09:23 -0300)]
14988: Fixes functionals tests (WIP)
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Fri, 3 May 2019 15:40:43 +0000 (11:40 -0400)]
Fix mistake setting container_count_max from wrong config parameter
refs #13996
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 2 May 2019 14:13:26 +0000 (10:13 -0400)]
Merge branch '15164-cr-finalize-lock' closes #15164
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 2 May 2019 13:22:12 +0000 (09:22 -0400)]
15112: log root user. log progress.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 1 May 2019 20:39:06 +0000 (16:39 -0400)]
15112: Rename since it doesn't rerun anything
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 1 May 2019 20:30:31 +0000 (16:30 -0400)]
15112: Don't submit anything, just produce a csv file with results
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Wed, 1 May 2019 20:18:51 +0000 (16:18 -0400)]
Fix typo.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Morris [Wed, 1 May 2019 18:56:35 +0000 (14:56 -0400)]
Fix debug setup accidentally committed.
refs #14670
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Peter Amstutz [Tue, 30 Apr 2019 22:06:54 +0000 (18:06 -0400)]
15112: Script to re-run containers
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Tue, 30 Apr 2019 19:55:35 +0000 (16:55 -0300)]
Merge branch '15161-config-check-rake-fix'
Refs #15161
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 30 Apr 2019 16:52:39 +0000 (13:52 -0300)]
15161: Re-adds API's config:check rake task (as a noop)
The unified rails postinst scripts assume that this task is always available.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Tue, 30 Apr 2019 15:53:01 +0000 (11:53 -0400)]
15164: Add locking between container completion and reuse
Addresses race condition between container completion and container
reuse. Without this locking, a container request can resolve and
attempt to reuse a container which is concurrently being completed,
resulting in a race condition that results in the container request
never being finalized.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Tue, 30 Apr 2019 15:43:04 +0000 (12:43 -0300)]
Fixes test running call on API server to be able to run single test files.
No issue #
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 30 Apr 2019 14:57:57 +0000 (11:57 -0300)]
15167: Adds mention about unlogged_attributes setting on Admin docs section.
Also, fixes discrepancies on minimum max_audit_log_age values.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 29 Apr 2019 14:19:21 +0000 (11:19 -0300)]
Merge branch 'api-tests-summary-fix'
No issue #
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 26 Apr 2019 23:34:07 +0000 (20:34 -0300)]
Fixes API Server's test runner to print failures summary at the end of the run.
No issue #
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 26 Apr 2019 21:57:22 +0000 (18:57 -0300)]
14988: Makes test runner defer the test failures summary.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 26 Apr 2019 20:56:23 +0000 (17:56 -0300)]
14988: Refactors ArvadosBase class to not subclass ActiveRecord.
Unit tests passing ok. The nulldb gem is still needed to avoid rails
try to run db reset/migrations.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Fri, 26 Apr 2019 20:39:28 +0000 (16:39 -0400)]
Merge branch '15148-lost-collection-pdh'
refs #15148
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 26 Apr 2019 20:06:39 +0000 (16:06 -0400)]
15148: Include list of affected PDHs in LostBlocksFile.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 26 Apr 2019 17:47:21 +0000 (13:47 -0400)]
15003: Merge branch 'master' into 15003-preprocess-config
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 26 Apr 2019 17:30:20 +0000 (13:30 -0400)]
Merge branch '14399-azure-list-retry'
fixes #14399
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 25 Apr 2019 17:54:40 +0000 (13:54 -0400)]
14399: Don't insert error text in the middle of an index response.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 25 Apr 2019 17:54:03 +0000 (13:54 -0400)]
14399: Retry Azure ListBlobs call after 503 errors.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Nico Cesar [Fri, 26 Apr 2019 16:07:38 +0000 (12:07 -0400)]
Typo in one of the parameters
no issue #
Arvados-DCO-1.1-Signed-off-by: Nico Cesar <ncesar@veritasgenetics.com>
Tom Clegg [Wed, 24 Apr 2019 20:42:06 +0000 (16:42 -0400)]
Merge branch '15112-save-lost-blocks-file'
refs #15112
refs #15148
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 24 Apr 2019 20:30:00 +0000 (16:30 -0400)]
15112: Remove tempfile only if still locked (not renamed).
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 24 Apr 2019 20:23:56 +0000 (16:23 -0400)]
15112: Fix fd leak on error.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 24 Apr 2019 19:22:44 +0000 (15:22 -0400)]
15112: Add config option to save list of lost blocks to a file.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 24 Apr 2019 17:34:02 +0000 (13:34 -0400)]
15003: Warn about unknown keys and bad value types.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Morris [Wed, 24 Apr 2019 16:20:58 +0000 (12:20 -0400)]
Merge branch '14627-crunchstat-summary-elapsed'
Fixes #14627
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Tom Morris [Mon, 18 Mar 2019 22:48:33 +0000 (18:48 -0400)]
Fix elapsed time calculation.
refs #14627
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Tom Morris [Wed, 24 Apr 2019 16:19:12 +0000 (12:19 -0400)]
Merge branch '14939-crunchstat-summary-python3-fixup'
Fixes #14939
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Tom Morris [Mon, 22 Apr 2019 19:34:39 +0000 (15:34 -0400)]
Fix iteration order dependency.
Causes tests to fail in Python 3.5, but not Python 3.7 due to dependency on iteration order of dicts.
Refs #14939
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Tom Morris [Wed, 27 Mar 2019 17:19:24 +0000 (13:19 -0400)]
Add crunchstat-summary Python 3 to all tests.
Refs #14939
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Peter Amstutz [Wed, 24 Apr 2019 15:49:33 +0000 (11:49 -0400)]
Add gradle.properties with empty ossrhUsername/Password refs #14670
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Wed, 24 Apr 2019 15:36:57 +0000 (11:36 -0400)]
Make the doc Rakefile a little more helpful when it's missing javadoc
dependencies.
refs #14670
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Tue, 23 Apr 2019 20:33:58 +0000 (16:33 -0400)]
15003: Update service names.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 23 Apr 2019 20:28:38 +0000 (16:28 -0400)]
15003: Add config-check command.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
projects / arvados.git / log