arvados.git
10 years ago3112: no need to reload after sending report.
radhika [Tue, 26 Aug 2014 15:32:59 +0000 (11:32 -0400)]
3112: no need to reload after sending report.

10 years agoMerge branch 'master' into 3112-report-bug
radhika [Tue, 26 Aug 2014 15:17:24 +0000 (11:17 -0400)]
Merge branch 'master' into 3112-report-bug

10 years agoFix migration and api templates that rely on changes that did not end up happening...
Tom Clegg [Tue, 26 Aug 2014 15:14:07 +0000 (11:14 -0400)]
Fix migration and api templates that rely on changes that did not end up happening. refs #3036

10 years agoMerge branch '3149-server-side-search' closes #3149
Tom Clegg [Tue, 26 Aug 2014 15:00:53 +0000 (11:00 -0400)]
Merge branch '3149-server-side-search' closes #3149

10 years ago3149: Merge branch 'master' into 3149-server-side-search
Tom Clegg [Tue, 26 Aug 2014 15:00:16 +0000 (11:00 -0400)]
3149: Merge branch 'master' into 3149-server-side-search

10 years agoSet up arvados env vars when running arv-normalize. No issue #
Tom Clegg [Tue, 26 Aug 2014 13:49:37 +0000 (09:49 -0400)]
Set up arvados env vars when running arv-normalize. No issue #

10 years agoMerge branch '3036-collection-uuids' closes #3036
Peter Amstutz [Tue, 26 Aug 2014 14:45:17 +0000 (10:45 -0400)]
Merge branch '3036-collection-uuids' closes #3036

10 years agoMerge branch 'master' into 3036-collection-uuids
Peter Amstutz [Tue, 26 Aug 2014 14:43:41 +0000 (10:43 -0400)]
Merge branch 'master' into 3036-collection-uuids

Conflicts:
services/api/test/fixtures/groups.yml

10 years ago3036: Fix merge conflicts. One python sdk test still fails.
Peter Amstutz [Tue, 26 Aug 2014 12:48:08 +0000 (08:48 -0400)]
3036: Fix merge conflicts.  One python sdk test still fails.

10 years agoMove styles out of tab partial. No issue #
Tom Clegg [Tue, 26 Aug 2014 05:41:53 +0000 (01:41 -0400)]
Move styles out of tab partial. No issue #

10 years agoPropagate query params to tab panes. No issue #
Tom Clegg [Tue, 26 Aug 2014 05:29:04 +0000 (01:29 -0400)]
Propagate query params to tab panes. No issue #

10 years agoRemove uuid-guessing code from "combine selected files". refs #3504
Tom Clegg [Tue, 26 Aug 2014 04:20:13 +0000 (00:20 -0400)]
Remove uuid-guessing code from "combine selected files". refs #3504

10 years agoDo not blow up in install stage when TASK_WORK is not set. No issue #
Tom Clegg [Tue, 26 Aug 2014 03:51:25 +0000 (23:51 -0400)]
Do not blow up in install stage when TASK_WORK is not set. No issue #

10 years agoDo not blow up when tmp directory already exists. No issue #
Tom Clegg [Tue, 26 Aug 2014 03:26:38 +0000 (23:26 -0400)]
Do not blow up when tmp directory already exists. No issue #

10 years ago3112: alert left justification
radhika [Tue, 26 Aug 2014 03:12:55 +0000 (23:12 -0400)]
3112: alert left justification

10 years agoMerge branch 'master' into 3112-report-bug
radhika [Tue, 26 Aug 2014 03:09:37 +0000 (23:09 -0400)]
Merge branch 'master' into 3112-report-bug

10 years ago3149: Clarify comments. Stick with a-b-c data keys where possible;
Tom Clegg [Tue, 26 Aug 2014 02:29:11 +0000 (22:29 -0400)]
3149: Clarify comments. Stick with a-b-c data keys where possible;
when not possible, explain why not.

10 years agoMerge branch '3149-filter-any' refs #3149
Tom Clegg [Tue, 26 Aug 2014 01:50:41 +0000 (21:50 -0400)]
Merge branch '3149-filter-any' refs #3149

10 years ago3149: Explain what "any" does as a filter attribute.
Tom Clegg [Tue, 26 Aug 2014 01:48:47 +0000 (21:48 -0400)]
3149: Explain what "any" does as a filter attribute.

10 years agoFix test fixtures breaking Workbench tests. refs #3171
Tom Clegg [Tue, 26 Aug 2014 01:33:57 +0000 (21:33 -0400)]
Fix test fixtures breaking Workbench tests. refs #3171

10 years agoMerge branch 'master' into 3112-report-bug
radhika [Tue, 26 Aug 2014 01:26:43 +0000 (21:26 -0400)]
Merge branch 'master' into 3112-report-bug

10 years agoDo not blow up when stdout!=subprocess.PIPE. no issue #
Tom Clegg [Tue, 26 Aug 2014 00:59:37 +0000 (20:59 -0400)]
Do not blow up when stdout!=subprocess.PIPE. no issue #

10 years agoMerge branch '3660-project-editable' closes #3660
Tom Clegg [Tue, 26 Aug 2014 00:41:43 +0000 (20:41 -0400)]
Merge branch '3660-project-editable' closes #3660

10 years ago3660: Clarify self-contradicting comment.
Tom Clegg [Tue, 26 Aug 2014 00:41:23 +0000 (20:41 -0400)]
3660: Clarify self-contradicting comment.

10 years agoUpdate Gemfile.lock. refs #3405
Tom Clegg [Tue, 26 Aug 2014 00:34:00 +0000 (20:34 -0400)]
Update Gemfile.lock. refs #3405

10 years agoMerge branch '3171-admin-groups' closes #3171
Tom Clegg [Tue, 26 Aug 2014 00:24:56 +0000 (20:24 -0400)]
Merge branch '3171-admin-groups' closes #3171

10 years agoInstead of munging TASK_WORK var, mkdir -p it (and therefore JOB_WORK)
Tom Clegg [Tue, 26 Aug 2014 00:24:12 +0000 (20:24 -0400)]
Instead of munging TASK_WORK var, mkdir -p it (and therefore JOB_WORK)
in setup script.

Without this, scripts that write to arvados.current_job().tmpdir
(i.e., JOB_WORK) fail.

No issue #

10 years ago3112: move manage account testing into its own file
radhika [Mon, 25 Aug 2014 23:19:41 +0000 (19:19 -0400)]
3112: move manage account testing into its own file

10 years ago3112: update issue report routes config and some other minor test updates.
radhika [Mon, 25 Aug 2014 21:20:51 +0000 (17:20 -0400)]
3112: update issue report routes config and some other minor test updates.

10 years agoDo not blow up with pipeline has a plain value in a script_parameter. No issue #
Tom Clegg [Mon, 25 Aug 2014 20:53:02 +0000 (16:53 -0400)]
Do not blow up with pipeline has a plain value in a script_parameter. No issue #

10 years ago3112: fix indentation
radhika [Mon, 25 Aug 2014 20:52:39 +0000 (16:52 -0400)]
3112: fix indentation

10 years ago3112: add some space below the submit button and alert panel
radhika [Mon, 25 Aug 2014 20:43:58 +0000 (16:43 -0400)]
3112: add some space below the submit button and alert panel

10 years agoMerge branch 'master' into 3036-collection-uuids
Peter Amstutz [Mon, 25 Aug 2014 20:29:32 +0000 (16:29 -0400)]
Merge branch 'master' into 3036-collection-uuids

Conflicts:
sdk/python/arvados/commands/put.py
services/api/app/controllers/application_controller.rb
services/api/app/controllers/arvados/v1/collections_controller.rb
services/api/app/models/arvados_model.rb
services/api/test/fixtures/groups.yml
services/api/test/fixtures/links.yml

10 years ago3112: minor cleanup
radhika [Mon, 25 Aug 2014 20:25:58 +0000 (16:25 -0400)]
3112: minor cleanup

10 years agoMerge branch 'master' into 3112-report-bug
radhika [Mon, 25 Aug 2014 18:36:55 +0000 (14:36 -0400)]
Merge branch 'master' into 3112-report-bug

10 years agoMerge branch '3171-group-membership' refs #3171
Tom Clegg [Mon, 25 Aug 2014 18:16:11 +0000 (14:16 -0400)]
Merge branch '3171-group-membership' refs #3171

10 years ago3171: Merge branch 'master' into 3171-group-membership
Tom Clegg [Mon, 25 Aug 2014 18:15:57 +0000 (14:15 -0400)]
3171: Merge branch 'master' into 3171-group-membership

Conflicts:
services/api/test/fixtures/links.yml

10 years ago3171: Fix wording, update docs.
Tom Clegg [Mon, 25 Aug 2014 18:12:37 +0000 (14:12 -0400)]
3171: Fix wording, update docs.

10 years agoMerge branch '3448-keep-put-timestamps'
Tim Pierce [Mon, 25 Aug 2014 17:31:01 +0000 (13:31 -0400)]
Merge branch '3448-keep-put-timestamps'

Closes #3448.

10 years agoMerge branch 'master' into 3112-report-bug
radhika [Mon, 25 Aug 2014 17:29:39 +0000 (13:29 -0400)]
Merge branch 'master' into 3112-report-bug

10 years ago3112: minor update in application layout test
radhika [Mon, 25 Aug 2014 16:09:41 +0000 (12:09 -0400)]
3112: minor update in application layout test

10 years agoMerge branch 'master' into 3112-report-bug
radhika [Mon, 25 Aug 2014 16:04:20 +0000 (12:04 -0400)]
Merge branch 'master' into 3112-report-bug

10 years ago3112: Move profile testing out of application_layout_test.rb into it's own file for...
radhika [Mon, 25 Aug 2014 16:02:57 +0000 (12:02 -0400)]
3112: Move profile testing out of application_layout_test.rb into it's own file for better testability.

10 years agoDo not blow up in crunch-dispatch.rb: do not pass --jobs and --pipelines
Ward Vandewege [Mon, 25 Aug 2014 15:39:05 +0000 (11:39 -0400)]
Do not blow up in crunch-dispatch.rb: do not pass --jobs and --pipelines
arguments to Rails.

no issue #

10 years agoDo not blow up in crunch-dispatch: fix syntax error. Ouch.
Ward Vandewege [Mon, 25 Aug 2014 15:29:53 +0000 (11:29 -0400)]
Do not blow up in crunch-dispatch: fix syntax error. Ouch.

no issue #

10 years agoMerge branch 'master' into 3112-report-bug
radhika [Mon, 25 Aug 2014 15:13:51 +0000 (11:13 -0400)]
Merge branch 'master' into 3112-report-bug

10 years ago3448: update tests with "untouchable" volumes
Tim Pierce [Mon, 25 Aug 2014 14:40:28 +0000 (10:40 -0400)]
3448: update tests with "untouchable" volumes

Added a "Touchable" flag to MockVolume, so that we can test that
PutBlock does the right thing when Touch fails.  Previous code was using
volume.Bad as an attempt to test this, but that short-circuited the Put
request before it ever attempted to call Touch.

Added TODOs with more testing improvements we can make as time permits.

10 years agoMerge branch 'multiple-dispatch' no issue #
Tom Clegg [Mon, 25 Aug 2014 14:16:27 +0000 (10:16 -0400)]
Merge branch 'multiple-dispatch' no issue #

10 years agocrunch-dispatch can run --jobs, --pipelines, or both.
Tom Clegg [Mon, 25 Aug 2014 14:05:14 +0000 (10:05 -0400)]
crunch-dispatch can run --jobs, --pipelines, or both.

10 years agoWith new apiserver, after upload, arv-put prints portable data hash instead of
Peter Amstutz [Mon, 25 Aug 2014 12:51:47 +0000 (08:51 -0400)]
With new apiserver, after upload, arv-put prints portable data hash instead of
collection uuid for compatibility with crunch.  refs #3504

10 years ago3149: Propagate filters from remote->dialog->infinite. Fix tests.
Tom Clegg [Mon, 25 Aug 2014 03:43:53 +0000 (23:43 -0400)]
3149: Propagate filters from remote->dialog->infinite. Fix tests.

10 years ago3149: Do not blow up on small devices/windows.
Tom Clegg [Mon, 25 Aug 2014 02:40:09 +0000 (22:40 -0400)]
3149: Do not blow up on small devices/windows.

10 years ago3149: Do not preload results in search dialog. Let infinite scroll do it.
Tom Clegg [Mon, 25 Aug 2014 02:23:43 +0000 (22:23 -0400)]
3149: Do not preload results in search dialog. Let infinite scroll do it.

10 years ago3149: Fix infinite scroll not updating after retry/refresh.
Tom Clegg [Mon, 25 Aug 2014 02:09:42 +0000 (22:09 -0400)]
3149: Fix infinite scroll not updating after retry/refresh.

10 years ago3149: Fix user-controlled filters overwriting page-controlled filters.
Tom Clegg [Mon, 25 Aug 2014 01:36:40 +0000 (21:36 -0400)]
3149: Fix user-controlled filters overwriting page-controlled filters.

10 years ago3149: Let Workbench server do all the filtering where infinite-scroll facilities...
Tom Clegg [Sun, 24 Aug 2014 23:58:54 +0000 (19:58 -0400)]
3149: Let Workbench server do all the filtering where infinite-scroll facilities exist.

10 years ago3149: Propagate search string to Workbench server using filters param.
Tom Clegg [Sun, 24 Aug 2014 22:46:29 +0000 (18:46 -0400)]
3149: Propagate search string to Workbench server using filters param.

10 years ago3149: Untabify.
Tom Clegg [Sun, 24 Aug 2014 21:22:50 +0000 (17:22 -0400)]
3149: Untabify.

10 years ago3149: Fix operator precedence in SQL statements built from record_filters.
Tom Clegg [Mon, 25 Aug 2014 01:50:22 +0000 (21:50 -0400)]
3149: Fix operator precedence in SQL statements built from record_filters.

10 years ago3149: Support "ilike" operator in record_filters.
Tom Clegg [Sun, 24 Aug 2014 23:48:28 +0000 (19:48 -0400)]
3149: Support "ilike" operator in record_filters.

10 years ago3149: Support "any" and array in filter "column" element.
Tom Clegg [Sun, 24 Aug 2014 22:48:48 +0000 (18:48 -0400)]
3149: Support "any" and array in filter "column" element.

10 years agoMerge branch 'master' into 3112-report-bug
radhika [Sun, 24 Aug 2014 22:55:51 +0000 (18:55 -0400)]
Merge branch 'master' into 3112-report-bug

Conflicts:
services/api/config/application.default.yml

10 years agocloses #3153
radhika [Sun, 24 Aug 2014 22:07:07 +0000 (18:07 -0400)]
closes #3153
Merge branch '3153-auto-setup-user'

10 years ago3153: update the newly added vm login link to not point to the "active" user
radhika [Sun, 24 Aug 2014 22:06:10 +0000 (18:06 -0400)]
3153: update the newly added vm login link to not point to the "active" user

10 years agocloses #3153
radhika [Sun, 24 Aug 2014 21:15:09 +0000 (17:15 -0400)]
closes #3153
Merge branch '3153-auto-setup-user'

10 years agoMerge branch 'master' into 3153-auto-setup-user
radhika [Sun, 24 Aug 2014 21:14:32 +0000 (17:14 -0400)]
Merge branch 'master' into 3153-auto-setup-user

10 years agoFix user agreements page when no signatures needed. Add tests. No issue #
Tom Clegg [Sun, 24 Aug 2014 20:05:15 +0000 (16:05 -0400)]
Fix user agreements page when no signatures needed. Add tests. No issue #

10 years agoFix disabled Continue button on user agreements page. No issue #
Tom Clegg [Sun, 24 Aug 2014 18:35:02 +0000 (14:35 -0400)]
Fix disabled Continue button on user agreements page. No issue #

10 years ago3112: trailing white space
radhika [Sun, 24 Aug 2014 12:31:54 +0000 (08:31 -0400)]
3112: trailing white space

10 years ago3112: report issue success event handling working in 404 error page.
radhika [Sun, 24 Aug 2014 12:11:13 +0000 (08:11 -0400)]
3112: report issue success event handling working in 404 error page.

10 years ago3112: update report_issue.js to confine event handling to report issue. WIP: mostly...
radhika [Sun, 24 Aug 2014 04:12:44 +0000 (00:12 -0400)]
3112: update report_issue.js to confine event handling to report issue. WIP: mostly working, except from the 404 error page.

10 years ago3660: Show add/run buttons if project is writable.
Tom Clegg [Sun, 24 Aug 2014 01:14:23 +0000 (21:14 -0400)]
3660: Show add/run buttons if project is writable.

Hide move/delete buttons if move is impossible.

10 years ago3171: Add administrator UI for toggling user<->role permissions.
Tom Clegg [Sun, 24 Aug 2014 00:00:59 +0000 (20:00 -0400)]
3171: Add administrator UI for toggling user<->role permissions.

10 years agoMerge branch 'master' into 3153-auto-setup-user
radhika [Sat, 23 Aug 2014 22:22:19 +0000 (18:22 -0400)]
Merge branch 'master' into 3153-auto-setup-user

10 years ago3153: minor test updates: rename the variable "active_recipients" as "new_user_recipi...
radhika [Sat, 23 Aug 2014 19:32:02 +0000 (15:32 -0400)]
3153: minor test updates: rename the variable "active_recipients" as "new_user_recipients" to ensure test readability.

10 years ago3153: update tests to look for new user created message also when an inactive user...
radhika [Sat, 23 Aug 2014 19:17:15 +0000 (15:17 -0400)]
3153: update tests to look for new user created message also when an inactive user is being created.

10 years ago3153: when new_users_are_active config param is set, even blacklisted users will...
radhika [Sat, 23 Aug 2014 17:19:39 +0000 (13:19 -0400)]
3153: when new_users_are_active config param is set, even blacklisted users will be "active", and hence the email notification would say the user is setup when auto_setup_new_users is set.

10 years agoMerge branch '3153-auto-setup-tests' into 3153-auto-setup-user
radhika [Sat, 23 Aug 2014 15:07:57 +0000 (11:07 -0400)]
Merge branch '3153-auto-setup-tests' into 3153-auto-setup-user

10 years ago3153: change variable name in test from valid_username to ok_to_auto_setup
radhika [Sat, 23 Aug 2014 15:00:29 +0000 (11:00 -0400)]
3153: change variable name in test from valid_username to ok_to_auto_setup

10 years ago3153: directly invoke setup method during auto-setup
radhika [Sat, 23 Aug 2014 14:50:43 +0000 (10:50 -0400)]
3153: directly invoke setup method during auto-setup

10 years ago3153: Add integration tests.
Tom Clegg [Sat, 23 Aug 2014 02:46:53 +0000 (22:46 -0400)]
3153: Add integration tests.

10 years agoAccomodate otherwise valid user-supplied portable data hashes with no size
Peter Amstutz [Fri, 22 Aug 2014 20:51:10 +0000 (16:51 -0400)]
Accomodate otherwise valid user-supplied portable data hashes with no size
hint, as provided by crunch.

10 years agoMerge branch 'master' into 3112-report-bug
radhika [Fri, 22 Aug 2014 20:22:32 +0000 (16:22 -0400)]
Merge branch 'master' into 3112-report-bug

10 years agoMerge branch 'master' into 3036-collection-uuids
Peter Amstutz [Fri, 22 Aug 2014 20:14:03 +0000 (16:14 -0400)]
Merge branch 'master' into 3036-collection-uuids

10 years agoReject empty fields in job creation filters. no issue #
Peter Amstutz [Fri, 22 Aug 2014 20:10:42 +0000 (16:10 -0400)]
Reject empty fields in job creation filters. no issue #

10 years agoMerge branch 'master' into 3112-report-bug
radhika [Fri, 22 Aug 2014 20:09:32 +0000 (16:09 -0400)]
Merge branch 'master' into 3112-report-bug

10 years agocloses #3183
radhika [Fri, 22 Aug 2014 20:08:46 +0000 (16:08 -0400)]
closes #3183
Merge branch '3188-remove-selected-button'

10 years agoMerge branch 'master' into 3188-remove-selected-button
radhika [Fri, 22 Aug 2014 20:05:43 +0000 (16:05 -0400)]
Merge branch 'master' into 3188-remove-selected-button

10 years ago3153: fix the while loop logic.
radhika [Fri, 22 Aug 2014 20:02:19 +0000 (16:02 -0400)]
3153: fix the while loop logic.

10 years agoImprove error checking a bit on find_commit_range for bad revisions and missing
Peter Amstutz [Fri, 22 Aug 2014 19:54:12 +0000 (15:54 -0400)]
Improve error checking a bit on find_commit_range for bad revisions and missing
repositories.  no issue #

10 years ago3112: reload current location when error report modal is closing. otherwise, the...
radhika [Fri, 22 Aug 2014 19:51:08 +0000 (15:51 -0400)]
3112: reload current location when error report modal is closing. otherwise, the modal does not show up if the help menu dropdown option is used right after sending an error report from within the 404 page.

10 years ago3112: modal is shown by js
radhika [Fri, 22 Aug 2014 19:31:32 +0000 (15:31 -0400)]
3112: modal is shown by js

10 years agoDisplay first file in collection if name field is nil or empty. refs #3504
Peter Amstutz [Fri, 22 Aug 2014 17:56:59 +0000 (13:56 -0400)]
Display first file in collection if name field is nil or empty. refs #3504

10 years agoChange 'expire_time' column to 'expires_at' for consistency with other date
Peter Amstutz [Fri, 22 Aug 2014 17:59:06 +0000 (13:59 -0400)]
Change 'expire_time' column to 'expires_at' for consistency with other date
columns.

10 years agoDisplay first file in collection if name field is nil or empty. refs #3504
Peter Amstutz [Fri, 22 Aug 2014 17:56:59 +0000 (13:56 -0400)]
Display first file in collection if name field is nil or empty. refs #3504

10 years ago3448: unit tests, bug fixes
Tim Pierce [Fri, 22 Aug 2014 17:52:33 +0000 (13:52 -0400)]
3448: unit tests, bug fixes

UnixVolume.Delete tests the return status of lockfile (oops, left out of
previous commit)

New unit/integration tests:

* TestPutTouch (volume_unix_test.go): issues a volume.Put for a block
  that already exists, and confirms that the mtime of the existing block
  is updated.

* TestPutBlockTouchFails (keepstore_test.go): issues PutBlock for a
  block that already exists but cannot be modified, confirms that the
  mtime on the old block is unchanged and that a new copy has been
  stored.

Added a volume.Mtime() method to return the block mtime, to assist in
testing.

10 years ago3112: ajax event handling on form not working. reverting back to document for now.
radhika [Fri, 22 Aug 2014 17:49:21 +0000 (13:49 -0400)]
3112: ajax event handling on form not working. reverting back to document for now.

10 years agoMerge branch 'master' into 3036-collection-uuids
Peter Amstutz [Fri, 22 Aug 2014 17:25:46 +0000 (13:25 -0400)]
Merge branch 'master' into 3036-collection-uuids

10 years ago3171: Do not use select param for database lookup during create/destroy actions.
Tom Clegg [Fri, 22 Aug 2014 15:58:41 +0000 (11:58 -0400)]
3171: Do not use select param for database lookup during create/destroy actions.

10 years ago3171: Skip find_object_by_uuid during :create action.
Tom Clegg [Fri, 22 Aug 2014 15:58:27 +0000 (11:58 -0400)]
3171: Skip find_object_by_uuid during :create action.