Tom Clegg [Fri, 29 May 2015 17:32:40 +0000 (13:32 -0400)]
6146: Ignore SIGPIPE while feeding data to tar. Rely on close() retval instead.
Tom Clegg [Fri, 29 May 2015 16:02:03 +0000 (12:02 -0400)]
In install script, log archive hash before running tar. refs #6146
Tom Clegg [Fri, 29 May 2015 15:31:43 +0000 (11:31 -0400)]
Merge branch '6146-job-runtime-sanity' refs #6146
Tom Clegg [Thu, 28 May 2015 21:13:44 +0000 (17:13 -0400)]
6146: Exit TEMPFAIL early (without failing the job) if worker nodes cannot run a trivial command.
This is meant to improve the way we handle a couple of edge cases.
1. A worker node doesn't get bootstrapped properly. It works well
enough to persuade nodemanager and the API server that it's alive and
ready to run jobs, but it can't actually run jobs. This means there's
a bug in the bootstrapping process -- its startup script shouldn't
tell slurm State=RESUME without checking itself -- but even so this
doesn't deserve to fail a job: it's definitely a system problem,
there's zero chance a different job would have gone any differently.
2. A worker node has a hardware problem, or it has fallen off the
network, or something like that, but slurm hasn't yet noticed and set
its state to DOWN, so slurm still uses it to satisfy crunch-dispatch's
"salloc" commands. As above, there's zero chance this could have gone
differently for any other job, so it doesn't make sense to fail the
job.
Tom Clegg [Wed, 27 May 2015 20:10:24 +0000 (16:10 -0400)]
Merge branch '6146-retry-install' refs #6146
Tom Clegg [Wed, 27 May 2015 19:48:54 +0000 (15:48 -0400)]
6146: Retry install (max 3 attempts) if install script fails with no error messages.
Also: if install fails, croak() instead of exit(1) so we still get a log file.
radhika [Wed, 27 May 2015 19:27:36 +0000 (15:27 -0400)]
closes #6057
Merge branch '6057-public-projects-page'
radhika [Wed, 27 May 2015 19:26:20 +0000 (15:26 -0400)]
6057: few more minor tweaks
Peter Amstutz [Wed, 27 May 2015 19:11:58 +0000 (15:11 -0400)]
Merge branch '6141-doc-workbench-links' refs #6141
radhika [Wed, 27 May 2015 19:03:54 +0000 (15:03 -0400)]
Merge branch 'master' into 6057-public-projects-page
Peter Amstutz [Wed, 27 May 2015 18:23:03 +0000 (14:23 -0400)]
Merge branch '6090-docker-use-local-sso' closes #6138
Ward Vandewege [Wed, 27 May 2015 16:42:44 +0000 (12:42 -0400)]
Add GPG key for RVM installation in the doc.
No issue #
Tom Clegg [Wed, 27 May 2015 13:06:10 +0000 (09:06 -0400)]
Merge branch '6098-full-text-index' refs #6098
Tom Clegg [Wed, 27 May 2015 13:05:40 +0000 (09:05 -0400)]
6098: Recreate full text indexes with leading spaces, to persuade Postgres to actually use them.
radhika [Tue, 26 May 2015 22:58:18 +0000 (18:58 -0400)]
Merge branch 'master' into 6057-public-projects-page
radhika [Tue, 26 May 2015 22:54:13 +0000 (18:54 -0400)]
6057: if /projects/public is accessed when anonymous config is not enabled, show 404.
Tom Clegg [Tue, 26 May 2015 14:31:56 +0000 (10:31 -0400)]
Merge branch '6094-install-script-sigpipe' refs #6094
Tom Clegg [Tue, 26 May 2015 14:18:38 +0000 (10:18 -0400)]
6094: Propagate install script stderr+stdout to job log.
Brett Smith [Tue, 26 May 2015 00:32:19 +0000 (20:32 -0400)]
Merge branch '6095-arv-copy-preserve-object-order-wip'
Closes #6095, #6117.
Brett Smith [Fri, 22 May 2015 21:10:37 +0000 (17:10 -0400)]
6095: arv-copy preserves order of copied JSON.
This means arv-copy no longer loses the order of pipeline template
components, which makes for a nicer presentation in Workbench.
Other Python clients that would like to preserve the order of JSON
responses can use OrderedJsonModel the same way.
Tom Clegg [Fri, 22 May 2015 21:42:17 +0000 (17:42 -0400)]
Merge branch '6094-install-script-sigpipe' (early part) refs #6094
radhika [Fri, 22 May 2015 20:40:59 +0000 (16:40 -0400)]
Merge branch 'master' into 6057-public-projects-page
radhika [Fri, 22 May 2015 20:39:57 +0000 (16:39 -0400)]
6057: add projects/public page, which lists publicly accessible projects.
Peter Amstutz [Fri, 22 May 2015 20:13:22 +0000 (16:13 -0400)]
6141: Remove hard-coded "https://" from "https://{{site.arvados_workbench_host}}" and require that arvados_workbench_host include the url scheme instead.
Tom Clegg [Fri, 22 May 2015 19:40:29 +0000 (15:40 -0400)]
6094: Consider arvados_sdk_version (not just script_version) when
deciding there's no need to extract or install anything.
Tom Clegg [Fri, 22 May 2015 19:39:00 +0000 (15:39 -0400)]
6094: Avoid SIGPIPE by consuming DATA section even when it's not needed.
Peter Amstutz [Fri, 22 May 2015 19:32:47 +0000 (15:32 -0400)]
6138: Added --domain to set ARVADOS_DOMAIN. Removed useless comments in apache2_vhost that mentioned qr1hi.
Ward Vandewege [Fri, 22 May 2015 14:03:01 +0000 (10:03 -0400)]
Add installation instructions for compute nodes; update the installation
instructions for crunch dispatcher.
No issue #
Tom Clegg [Thu, 21 May 2015 21:15:06 +0000 (17:15 -0400)]
Merge branch '6087-collection-timing' (early part) refs #6087 refs #6092
Tom Clegg [Thu, 21 May 2015 20:51:52 +0000 (16:51 -0400)]
6087: Get database time only once per manifest-signing/verifying event, rather than once per locator.
Brett Smith [Thu, 21 May 2015 20:06:16 +0000 (16:06 -0400)]
Update tutorial pipeline page to match new definition.
No issue #.
Peter Amstutz [Thu, 21 May 2015 19:00:10 +0000 (15:00 -0400)]
6090: Docker install uses local SSO server instead of auth.curoverse.com. Also
clean up references to dev.arvados to use @@ARVADOS_DOMAIN@@.
Brett Smith [Thu, 21 May 2015 18:23:46 +0000 (14:23 -0400)]
Update tutorial pipeline template definition.
This helps it run out of the box again.
No issue #.
radhika [Thu, 21 May 2015 16:09:07 +0000 (12:09 -0400)]
refs #6061
6061: set profiling_enabled to true in workbench application.default.yml for test env.
Ward Vandewege [Wed, 20 May 2015 15:29:29 +0000 (11:29 -0400)]
Documentation fix (quoting) for the 'Add an Arvados repository' page.
No issue #
Tom Clegg [Wed, 20 May 2015 14:54:00 +0000 (10:54 -0400)]
5748: Remove unused import. refs #5748
Tom Clegg [Wed, 20 May 2015 14:15:30 +0000 (10:15 -0400)]
5748: Remove runtime.GC() obsoleted by bufferpool. refs #5748
radhika [Wed, 20 May 2015 13:40:35 +0000 (09:40 -0400)]
closes #6064
Merge branch '6064-collection-output-of-perf-issue'
radhika [Wed, 20 May 2015 12:13:14 +0000 (08:13 -0400)]
integration_performance tests: add comment describing how to run the tests; also remove the ENV variable which is not needed
since the tests in this directory will not be part of regular test run because it is not a standard rails test directory.
radhika [Wed, 20 May 2015 03:00:21 +0000 (23:00 -0400)]
6064: rollback cache update so that it can be done in a separate branch.
radhika [Wed, 20 May 2015 02:32:25 +0000 (22:32 -0400)]
Merge branch 'master' into 6064-collection-output-of-perf-issue
Peter Amstutz [Tue, 19 May 2015 20:31:39 +0000 (16:31 -0400)]
Merge branch '6071-java-sdk-timeouts' closes #6071
Peter Amstutz [Tue, 19 May 2015 20:29:36 +0000 (16:29 -0400)]
6071: Bump up timeout to 120 seconds.
Radhika Chippada [Tue, 19 May 2015 19:26:07 +0000 (15:26 -0400)]
refs #6061
Merge branch '6061-intg-perf-tests'
Peter Amstutz [Tue, 19 May 2015 19:31:35 +0000 (15:31 -0400)]
Merge branch '6073-pycurl-version' refs #6073
Radhika Chippada [Tue, 19 May 2015 19:23:34 +0000 (15:23 -0400)]
6061: add workbench integration_performance test folder.
Peter Amstutz [Tue, 19 May 2015 19:20:16 +0000 (15:20 -0400)]
6071: Fix URL
Peter Amstutz [Tue, 19 May 2015 17:55:57 +0000 (13:55 -0400)]
6071: Refactor project organization a bit.
Peter Amstutz [Tue, 19 May 2015 17:52:51 +0000 (13:52 -0400)]
6071: Increase default timeout and enable retry support.
Peter Amstutz [Tue, 19 May 2015 16:54:37 +0000 (12:54 -0400)]
6073: Pycurl depends on latest in Arvados SDK setup.py
Radhika Chippada [Tue, 19 May 2015 03:24:46 +0000 (23:24 -0400)]
closes #4717
Merge branch '4717-read-only-keep-services-flag'
Radhika Chippada [Tue, 19 May 2015 03:11:59 +0000 (23:11 -0400)]
4717: rename writableRoots as writableLocalRoots.
Radhika Chippada [Tue, 19 May 2015 02:22:18 +0000 (22:22 -0400)]
Merge branch 'master' into 4717-read-only-keep-services-flag
Radhika Chippada [Tue, 19 May 2015 02:21:33 +0000 (22:21 -0400)]
closes #5720
Merge branch '5720-ajax-loading-error'
Radhika Chippada [Tue, 19 May 2015 02:09:21 +0000 (22:09 -0400)]
6064: display only 5 objects for which this collection is the output in source_summary.
Tom Clegg [Mon, 18 May 2015 17:36:27 +0000 (13:36 -0400)]
5720: Leave existing content in place (and schedule another reload) if a tab-refresh gets cancelled.
Nico Cesar [Fri, 15 May 2015 21:04:06 +0000 (17:04 -0400)]
Merge branch '5998-arvdock-bridge-option'
closes #5998
Nico Cesar [Fri, 15 May 2015 19:00:21 +0000 (15:00 -0400)]
$start_bridge -> $bridge
options modified
ip command refactored
refs #5998
Ward Vandewege [Fri, 15 May 2015 13:46:07 +0000 (09:46 -0400)]
Check in docker/sso/database.yml.in, forgotten in commit
ea7da293b0a10baef18cfc6e107c87a9c3b09546.
No issue #
Radhika Chippada [Fri, 15 May 2015 02:56:12 +0000 (22:56 -0400)]
Merge branch 'master' into 4717-read-only-keep-services-flag
Radhika Chippada [Fri, 15 May 2015 02:55:25 +0000 (22:55 -0400)]
4717: use keep_services -> read_only flag in python sdk.
Tom Clegg [Fri, 15 May 2015 02:11:49 +0000 (22:11 -0400)]
Merge branch '5748-max-buffers-leak-TC' refs #5748
Tom Clegg [Fri, 15 May 2015 02:10:02 +0000 (22:10 -0400)]
5748: gofmt fixes.
Tom Clegg [Fri, 15 May 2015 02:06:46 +0000 (22:06 -0400)]
5748: Time out leak tests after 20s.
Tom Clegg [Fri, 15 May 2015 01:52:12 +0000 (21:52 -0400)]
5748: Put() always takes a non-nil buf.
Brett Smith [Thu, 14 May 2015 22:32:02 +0000 (18:32 -0400)]
5915: Workbench tries the anonymous reader token first for collection wget listing.
This is necessary to make sure we provide a usable token to arv-get.
If we don't check the anonymous reader token first, we might decide
that another token is usable when in actuality, the reader token is
the one that worked. Closes #5915.
Peter Amstutz [Thu, 14 May 2015 21:01:13 +0000 (17:01 -0400)]
5748: Basic tests to check for bufferpool resource leaks
Peter Amstutz [Thu, 14 May 2015 20:02:43 +0000 (16:02 -0400)]
5748: Fix leaks in GetBlock error handling and PutBlock use of GetBlock where
buffers were not being returned to the buffer pool.
Radhika Chippada [Thu, 14 May 2015 16:39:42 +0000 (12:39 -0400)]
4717: just a couple minor tweaks
Radhika Chippada [Thu, 14 May 2015 16:32:12 +0000 (12:32 -0400)]
4717: writable roots in go sdk
Radhika Chippada [Thu, 14 May 2015 15:59:34 +0000 (11:59 -0400)]
Merge branch 'master' into 4717-read-only-keep-services-flag
Radhika Chippada [Thu, 14 May 2015 15:58:59 +0000 (11:58 -0400)]
closes #5645
Merge branch '5645-open-graph-meta-tags'
Radhika Chippada [Thu, 14 May 2015 15:56:49 +0000 (11:56 -0400)]
5645: updated comment
Radhika Chippada [Thu, 14 May 2015 13:23:25 +0000 (09:23 -0400)]
Merge branch 'master' into 5645-open-graph-meta-tags
Radhika Chippada [Thu, 14 May 2015 13:22:43 +0000 (09:22 -0400)]
5645: add og:site_name to the list of open graph meta tags added to the page.
Radhika Chippada [Wed, 13 May 2015 20:02:41 +0000 (16:02 -0400)]
4717: use keep_services -> read_only flag in go sdk.
Radhika Chippada [Tue, 12 May 2015 19:55:10 +0000 (15:55 -0400)]
4717: add read_only column for keep_services data model.
Nico Cesar [Tue, 12 May 2015 19:31:49 +0000 (15:31 -0400)]
Merge branch 'master' into 5998-arvdock-bridge-option
Nico Cesar [Tue, 12 May 2015 19:24:27 +0000 (15:24 -0400)]
trailing whitespaces
Nico Cesar [Tue, 12 May 2015 19:22:19 +0000 (15:22 -0400)]
fixing some trailing whitespaces
Ward Vandewege [Tue, 12 May 2015 19:12:46 +0000 (15:12 -0400)]
Fix sso docker container build, and enable local account creation for
this sso container uses.
No issue #
Nico Cesar [Tue, 12 May 2015 19:08:42 +0000 (15:08 -0400)]
initial version to have a --bridge parameter
also improves:
grep: The -P option is not supported if libpcre.so.3 is not available // Replaced -E making compatible
Radhika Chippada [Tue, 12 May 2015 17:50:31 +0000 (13:50 -0400)]
Merge branch 'master' into 5720-ajax-loading-error
Radhika Chippada [Tue, 12 May 2015 17:46:56 +0000 (13:46 -0400)]
5720: when jqxhr readyState == 0 or status == 0, instead of skipping show "Cancelled" message.
Radhika Chippada [Tue, 12 May 2015 17:39:05 +0000 (13:39 -0400)]
5720: when jqxhr readyState == 0 or status == 0, instead of skipping show "Cancelled" message.
Radhika Chippada [Tue, 12 May 2015 17:05:00 +0000 (13:05 -0400)]
5645: added open graph meta tags to page
Ward Vandewege [Tue, 12 May 2015 16:51:36 +0000 (12:51 -0400)]
Add instructions to generate assets to SSO installation page.
No issue #
Ward Vandewege [Tue, 12 May 2015 15:17:48 +0000 (11:17 -0400)]
Reorder SSO install documentation so that the rake db:setup call does
not fail because uuid_prefix and secret_token are not set yet.
No issue #
Ward Vandewege [Tue, 12 May 2015 14:48:26 +0000 (10:48 -0400)]
Even more SSO server install instructions.
No issue #
Ward Vandewege [Tue, 12 May 2015 14:27:51 +0000 (10:27 -0400)]
Update SSO server documentation to match current reality.
No issue #
Brett Smith [Mon, 11 May 2015 21:50:40 +0000 (17:50 -0400)]
Merge branch '5736-node-manager-easy-slot-cleanup-wip'
Refs #5736. Closes #5995.
Brett Smith [Mon, 11 May 2015 20:51:29 +0000 (16:51 -0400)]
5736: Node Manager cleans node records after shutting down a paired node.
This is an easy case to handle, and helps avoid exhausting SLURM
slot numbers.
Brett Smith [Mon, 11 May 2015 18:57:49 +0000 (14:57 -0400)]
5736: Fix typo in Node Manager test comments.
Brett Smith [Mon, 11 May 2015 21:35:58 +0000 (17:35 -0400)]
Merge branch '3793-clean-docker-images-wip'
Refs #3793. Closes #5857.
Brett Smith [Thu, 30 Apr 2015 13:19:15 +0000 (09:19 -0400)]
3793: Add Docker image cleaner service for compute nodes.
This service monitors Docker events. When a container is destroyed,
it deletes any images that are unused and exceed the configured
storage quota. This will prevent Docker images from growing
indefinitely on long-running compute nodes.
Peter Amstutz [Mon, 11 May 2015 21:11:01 +0000 (17:11 -0400)]
Merge branch '5992-keep-proxy-ignore-locator-hints' closes #5992
Peter Amstutz [Mon, 11 May 2015 20:38:23 +0000 (16:38 -0400)]
5992: keepproxy strips +K@{5} hints from locators before trying GET. +K@5-5-15
locators are preserved.
Radhika Chippada [Mon, 11 May 2015 17:33:53 +0000 (13:33 -0400)]
closes #3454
Merge branch '3454-default-docker-image'
Peter Amstutz [Mon, 11 May 2015 15:57:52 +0000 (11:57 -0400)]
Merge branch '3198-inode-cache' refs #3198
Radhika Chippada [Mon, 11 May 2015 15:17:02 +0000 (11:17 -0400)]
Merge branch 'master' into 3454-default-docker-image
projects / arvados.git / log