arvados.git
4 years agoMerge branch '15678-pkg-version'
Tom Clegg [Wed, 2 Oct 2019 17:09:42 +0000 (13:09 -0400)]
Merge branch '15678-pkg-version'

closes #15678

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '15599-keepstore-iam-role'
Tom Clegg [Wed, 2 Oct 2019 15:48:55 +0000 (11:48 -0400)]
Merge branch '15599-keepstore-iam-role'

closes #15599

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '15640-cwl-test-mem' refs #15640
Peter Amstutz [Tue, 1 Oct 2019 20:30:52 +0000 (16:30 -0400)]
Merge branch '15640-cwl-test-mem' refs #15640

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoarvbox pin yarn to 1.17.3 no issue #
Peter Amstutz [Tue, 1 Oct 2019 19:22:58 +0000 (15:22 -0400)]
arvbox pin yarn to 1.17.3 no issue #

Work around for "Incorrect integrity when fetching from the cache"

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15599: Reject configuration with both IAMRole and Access/SecretKey.
Tom Clegg [Tue, 1 Oct 2019 18:52:03 +0000 (14:52 -0400)]
15599: Reject configuration with both IAMRole and Access/SecretKey.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15599: Use default/automatic credentials for example config.
Tom Clegg [Tue, 1 Oct 2019 18:47:25 +0000 (14:47 -0400)]
15599: Use default/automatic credentials for example config.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoUpdate workbench bundle.
Tom Clegg [Tue, 1 Oct 2019 18:38:21 +0000 (14:38 -0400)]
Update workbench bundle.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15678: Fix version reporting.
Tom Clegg [Tue, 1 Oct 2019 17:46:14 +0000 (13:46 -0400)]
15678: Fix version reporting.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '15656-user-delete-container'
Tom Clegg [Tue, 1 Oct 2019 14:29:07 +0000 (10:29 -0400)]
Merge branch '15656-user-delete-container'

refs #15656

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15656: Note "delete container" is admin-only and not normally used.
Tom Clegg [Tue, 1 Oct 2019 14:24:02 +0000 (10:24 -0400)]
15656: Note "delete container" is admin-only and not normally used.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoUpdate login-sync Gemfile.lock.
Tom Clegg [Tue, 1 Oct 2019 03:34:23 +0000 (23:34 -0400)]
Update login-sync Gemfile.lock.

refs #15673

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15599: Improve error message when no role is defined.
Tom Clegg [Mon, 30 Sep 2019 23:22:27 +0000 (19:22 -0400)]
15599: Improve error message when no role is defined.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15599: Warn if multiple roles are assigned.
Tom Clegg [Mon, 30 Sep 2019 23:22:25 +0000 (19:22 -0400)]
15599: Warn if multiple roles are assigned.

This is currently impossible on AWS. If it becomes possible in the
future, this may help with troubleshooting.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15599: Look up IAM role name from metadata if not configured.
Tom Clegg [Fri, 27 Sep 2019 21:30:47 +0000 (17:30 -0400)]
15599: Look up IAM role name from metadata if not configured.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15599: Fix misleading error message when address already in use.
Tom Clegg [Fri, 27 Sep 2019 20:40:19 +0000 (16:40 -0400)]
15599: Fix misleading error message when address already in use.

Also warn about unexpected errors encountered while looking for the
current host's entry in InternalURLs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15599: Support IAM role credentials in keepstore.
Tom Clegg [Fri, 27 Sep 2019 20:39:51 +0000 (16:39 -0400)]
15599: Support IAM role credentials in keepstore.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15656: Fix missing permission check.
Tom Clegg [Thu, 26 Sep 2019 14:47:33 +0000 (10:47 -0400)]
15656: Fix missing permission check.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '15673-faraday-pin'
Tom Clegg [Mon, 30 Sep 2019 20:44:34 +0000 (16:44 -0400)]
Merge branch '15673-faraday-pin'

refs #15673

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15673: Pin faraday below 0.16.
Tom Clegg [Mon, 30 Sep 2019 19:33:53 +0000 (15:33 -0400)]
15673: Pin faraday below 0.16.

This allows arvados-cli and login-sync to install correctly even if an
older arvados gem (without the faraday pin) is already installed.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15673: Pin faraday gem version.
Tom Clegg [Mon, 30 Sep 2019 19:03:06 +0000 (15:03 -0400)]
15673: Pin faraday gem version.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15673: Fix ruby warnings.
Tom Clegg [Mon, 30 Sep 2019 14:00:28 +0000 (10:00 -0400)]
15673: Fix ruby warnings.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15673: Show stderr before giving up failed command.
Tom Clegg [Mon, 30 Sep 2019 13:39:25 +0000 (09:39 -0400)]
15673: Show stderr before giving up failed command.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoUse default Azure storage endpoint if configured value is "".
Tom Clegg [Mon, 30 Sep 2019 18:53:57 +0000 (14:53 -0400)]
Use default Azure storage endpoint if configured value is "".

This is the documented behavior.

refs #13647

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15640: Adjust memory requirements
Peter Amstutz [Mon, 30 Sep 2019 18:51:00 +0000 (14:51 -0400)]
15640: Adjust memory requirements

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '13647-keepstore-config'
Tom Clegg [Mon, 30 Sep 2019 15:13:24 +0000 (11:13 -0400)]
Merge branch '13647-keepstore-config'

refs #13647

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Check ARVADOS_* env vars when loading config.
Tom Clegg [Fri, 27 Sep 2019 18:12:22 +0000 (14:12 -0400)]
13647: Check ARVADOS_* env vars when loading config.

Previously they were only checked when starting up a service, so they
weren't noticed by config-dump etc., and couldn't be used by the
keepstore config migration when loading the keep_services endpoint.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Don't check pending keepstore migrations during API startup.
Tom Clegg [Fri, 27 Sep 2019 17:38:35 +0000 (13:38 -0400)]
13647: Don't check pending keepstore migrations during API startup.

Fixes deadlock: If controller is already up when RailsAPI boots,
RailsAPI runs "config-dump -skip-legacy", which (until this change)
requests .../keep_services; controller forwards the request to
RailsAPI; and passenger queues the request until RailsAPI finishes
booting.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoAvoid nginx startup race in test suite.
Tom Clegg [Thu, 26 Sep 2019 19:27:17 +0000 (15:27 -0400)]
Avoid nginx startup race in test suite.

If run_test_server.py doesn't wait for nginx to start up before
returning, run-tests.sh might check the pidfile, conclude nginx has
died, and abort.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '13647-keepstore-config'
Tom Clegg [Thu, 26 Sep 2019 15:15:56 +0000 (11:15 -0400)]
Merge branch '13647-keepstore-config'

refs #13647

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Migrate arvbox volume config.
Tom Clegg [Wed, 25 Sep 2019 21:15:11 +0000 (17:15 -0400)]
13647: Migrate arvbox volume config.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Set X-External-Client header in arvbox.
Tom Clegg [Wed, 25 Sep 2019 19:29:23 +0000 (15:29 -0400)]
13647: Set X-External-Client header in arvbox.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Add keepstore service entries to arvbox config.
Tom Clegg [Sat, 21 Sep 2019 06:28:37 +0000 (02:28 -0400)]
13647: Add keepstore service entries to arvbox config.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Remove duplicate Keepproxy config.
Tom Clegg [Sat, 21 Sep 2019 06:27:34 +0000 (02:27 -0400)]
13647: Remove duplicate Keepproxy config.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Fix send-HUP-to-keepproxy command.
Tom Clegg [Sat, 21 Sep 2019 06:26:52 +0000 (02:26 -0400)]
13647: Fix send-HUP-to-keepproxy command.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '15648-centos7-upgrade-to-rh-python36'
Ward Vandewege [Fri, 20 Sep 2019 20:23:41 +0000 (16:23 -0400)]
Merge branch '15648-centos7-upgrade-to-rh-python36'

closes #15648

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

4 years ago15648: update documentation adding upgrade to rh-python36
Fernando Monserrat [Fri, 20 Sep 2019 15:49:15 +0000 (12:49 -0300)]
15648: update documentation adding upgrade to rh-python36

Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

4 years ago15648: update to rh-python36
Fernando Monserrat [Thu, 19 Sep 2019 18:57:59 +0000 (15:57 -0300)]
15648: update to rh-python36

Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

4 years agoMerge branch '15649-libcloud-azure'
Tom Clegg [Fri, 20 Sep 2019 18:11:16 +0000 (14:11 -0400)]
Merge branch '15649-libcloud-azure'

refs #15649

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15649: Pin libcloud 2.5.0.
Tom Clegg [Fri, 20 Sep 2019 15:16:04 +0000 (11:16 -0400)]
15649: Pin libcloud 2.5.0.

libcloud 2.6.0 uses an incorrect blob storage URL when creating Azure
nodes.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Fix nil loggers in test suites.
Tom Clegg [Thu, 19 Sep 2019 19:05:50 +0000 (15:05 -0400)]
13647: Fix nil loggers in test suites.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Don't do API calls while loading controller config.
Tom Clegg [Thu, 19 Sep 2019 17:45:49 +0000 (13:45 -0400)]
13647: Don't do API calls while loading controller config.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Update migration notes to use "arvados-server config-diff".
Tom Clegg [Thu, 19 Sep 2019 15:12:41 +0000 (11:12 -0400)]
13647: Update migration notes to use "arvados-server config-diff".

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Update keepstore references on keep-balance install page.
Tom Clegg [Thu, 19 Sep 2019 14:41:32 +0000 (10:41 -0400)]
13647: Update keepstore references on keep-balance install page.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Merge branch 'master' into 13647-keepstore-config
Tom Clegg [Thu, 19 Sep 2019 14:21:52 +0000 (10:21 -0400)]
13647: Merge branch 'master' into 13647-keepstore-config

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoCount "failed to start services" as failure, not success.
Tom Clegg [Thu, 19 Sep 2019 13:52:44 +0000 (09:52 -0400)]
Count "failed to start services" as failure, not success.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '15615-retry-wb1-tests'
Tom Clegg [Thu, 19 Sep 2019 13:51:32 +0000 (09:51 -0400)]
Merge branch '15615-retry-wb1-tests'

closes #15615

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Count "failed to start services" as failure, not success.
Tom Clegg [Thu, 19 Sep 2019 13:39:11 +0000 (09:39 -0400)]
13647: Count "failed to start services" as failure, not success.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Export keepproxy's ExternalURL, not InternalURLs.
Tom Clegg [Thu, 19 Sep 2019 13:07:07 +0000 (09:07 -0400)]
13647: Export keepproxy's ExternalURL, not InternalURLs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Update keepstore/keep_services config migration instructions.
Tom Clegg [Thu, 19 Sep 2019 01:21:18 +0000 (21:21 -0400)]
13647: Update keepstore/keep_services config migration instructions.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Advise deleting keep_services entries after migrating.
Tom Clegg [Wed, 18 Sep 2019 20:28:46 +0000 (16:28 -0400)]
13647: Advise deleting keep_services entries after migrating.

Also warn about orphaned keepstore servers with no configured volumes,
and volumes configured to be accessed by nonexistent keepstore
servers.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Add upgrade note about keepstore command line flags.
Tom Clegg [Tue, 17 Sep 2019 17:28:48 +0000 (13:28 -0400)]
13647: Add upgrade note about keepstore command line flags.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Update config keywords in docs, comments, and error messages.
Tom Clegg [Tue, 17 Sep 2019 17:25:45 +0000 (13:25 -0400)]
13647: Update config keywords in docs, comments, and error messages.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Improve error message.
Tom Clegg [Tue, 17 Sep 2019 15:33:36 +0000 (11:33 -0400)]
13647: Improve error message.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Recommend using a well supported server/volume layout.
Tom Clegg [Tue, 17 Sep 2019 15:29:59 +0000 (11:29 -0400)]
13647: Recommend using a well supported server/volume layout.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Add volume config doc links.
Tom Clegg [Mon, 16 Sep 2019 15:31:09 +0000 (11:31 -0400)]
13647: Add volume config doc links.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Make keepstore fs config more consistent with s3/azure.
Tom Clegg [Mon, 16 Sep 2019 15:24:20 +0000 (11:24 -0400)]
13647: Make keepstore fs config more consistent with s3/azure.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Fix typos.
Tom Clegg [Mon, 16 Sep 2019 15:03:40 +0000 (11:03 -0400)]
13647: Fix typos.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Add AccessViaHosts doc comment.
Tom Clegg [Mon, 16 Sep 2019 15:01:52 +0000 (11:01 -0400)]
13647: Add AccessViaHosts doc comment.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Move Rendezvous doc comment to default config file.
Tom Clegg [Mon, 16 Sep 2019 15:01:28 +0000 (11:01 -0400)]
13647: Move Rendezvous doc comment to default config file.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Use *.uuid_prefix.example.com more consistently.
Tom Clegg [Mon, 16 Sep 2019 13:51:38 +0000 (09:51 -0400)]
13647: Use *.uuid_prefix.example.com more consistently.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Remove superfluous conditionals.
Tom Clegg [Mon, 16 Sep 2019 05:12:33 +0000 (01:12 -0400)]
13647: Remove superfluous conditionals.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Move ...Controller.from_config_or_db to KeepService.all.
Tom Clegg [Mon, 16 Sep 2019 00:07:23 +0000 (20:07 -0400)]
13647: Move ...Controller.from_config_or_db to KeepService.all.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Remove obsolete reference to out-of-sync configs.
Tom Clegg [Fri, 13 Sep 2019 20:28:01 +0000 (16:28 -0400)]
13647: Remove obsolete reference to out-of-sync configs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Fix BlobSigning config comment.
Tom Clegg [Fri, 13 Sep 2019 20:26:51 +0000 (16:26 -0400)]
13647: Fix BlobSigning config comment.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Rename MaxKeepBlockBuffers -> MaxKeepBlobBuffers
Tom Clegg [Fri, 13 Sep 2019 19:50:48 +0000 (15:50 -0400)]
13647: Rename MaxKeepBlockBuffers -> MaxKeepBlobBuffers

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Split up long func.
Tom Clegg [Fri, 13 Sep 2019 19:44:39 +0000 (15:44 -0400)]
13647: Split up long func.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15615: Don't use -v for workbench_profile/benchmark.
Tom Clegg [Thu, 12 Sep 2019 19:57:02 +0000 (15:57 -0400)]
15615: Don't use -v for workbench_profile/benchmark.

Verbose mode causes benchmarks to fail.

.../.gem/ruby/2.5.0/gems/railties-5.0.7.2/lib/rails/test_unit/reporter.rb:66:in
`%': can't convert nil into Float (TypeError)

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15615: Don't retry skipped tests.
Tom Clegg [Thu, 12 Sep 2019 18:04:06 +0000 (14:04 -0400)]
15615: Don't retry skipped tests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15615: Fix wrong rake task being used when wb1 testargs supplied.
Tom Clegg [Thu, 12 Sep 2019 17:53:19 +0000 (13:53 -0400)]
15615: Fix wrong rake task being used when wb1 testargs supplied.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoarvbox needs to pull branch to ensure latest no issue #
Peter Amstutz [Thu, 12 Sep 2019 13:14:38 +0000 (09:14 -0400)]
arvbox needs to pull branch to ensure latest no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15615: Retry failed wb1 tests twice before giving up.
Tom Clegg [Wed, 11 Sep 2019 20:42:58 +0000 (16:42 -0400)]
15615: Retry failed wb1 tests twice before giving up.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15615: Don't save screenshots of skipped tests.
Tom Clegg [Wed, 11 Sep 2019 20:42:42 +0000 (16:42 -0400)]
15615: Don't save screenshots of skipped tests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoUse arvados-fork for composer no issue #
Peter Amstutz [Wed, 11 Sep 2019 20:26:19 +0000 (16:26 -0400)]
Use arvados-fork for composer no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago13647: Update Azure volume docs.
Tom Clegg [Wed, 11 Sep 2019 18:42:42 +0000 (14:42 -0400)]
13647: Update Azure volume docs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoFix Composer login, use https, refs #15356
Peter Amstutz [Wed, 11 Sep 2019 18:20:28 +0000 (14:20 -0400)]
Fix Composer login, use https, refs #15356

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago13647: Update S3 volume config docs.
Tom Clegg [Wed, 11 Sep 2019 15:53:01 +0000 (11:53 -0400)]
13647: Update S3 volume config docs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '15554-crunchstat-summary-live-log-no-sdk'
Tom Morris [Wed, 11 Sep 2019 14:32:11 +0000 (10:32 -0400)]
Merge branch '15554-crunchstat-summary-live-log-no-sdk'

Fixes #15554

Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

4 years ago13647: Add missing include.
Tom Clegg [Wed, 11 Sep 2019 13:16:52 +0000 (09:16 -0400)]
13647: Add missing include.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '15612-update-centos7-to-bash-4' refs #15612
Fernando Monserrat [Tue, 10 Sep 2019 20:52:53 +0000 (17:52 -0300)]
Merge branch '15612-update-centos7-to-bash-4' refs #15612

Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

4 years ago15612: Add reference to the ticket regarding the bash upgrade
Fernando Monserrat [Tue, 10 Sep 2019 20:43:06 +0000 (17:43 -0300)]
15612: Add reference to the ticket regarding the bash upgrade

Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

4 years ago13647: Fixup docs.
Tom Clegg [Tue, 10 Sep 2019 20:37:05 +0000 (16:37 -0400)]
13647: Fixup docs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15412: update to bash 4.4.12 on centos7 containers
Fernando Monserrat [Tue, 10 Sep 2019 19:33:24 +0000 (16:33 -0300)]
15412: update to bash 4.4.12 on centos7 containers
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>

4 years ago13647: Merge branch 'master' into 13647-keepstore-config
Tom Clegg [Tue, 10 Sep 2019 19:22:45 +0000 (15:22 -0400)]
13647: Merge branch 'master' into 13647-keepstore-config

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Update keepstore install docs, eliminate keep_services step.
Tom Clegg [Tue, 10 Sep 2019 19:20:16 +0000 (15:20 -0400)]
13647: Update keepstore install docs, eliminate keep_services step.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15554 - Don't depend on latest version of Arvados Python SDK
Tom Morris [Tue, 10 Sep 2019 18:19:39 +0000 (14:19 -0400)]
15554 - Don't depend on latest version of Arvados Python SDK

Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

4 years agoMerge branch '15499-container-reuse-fix' refs #15499
Peter Amstutz [Tue, 10 Sep 2019 15:32:56 +0000 (11:32 -0400)]
Merge branch '15499-container-reuse-fix' refs #15499

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15499: Only create additional log collection when container is Complete
Peter Amstutz [Tue, 10 Sep 2019 15:25:58 +0000 (11:25 -0400)]
15499: Only create additional log collection when container is Complete

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '15499-container-reuse-fix' refs #15499
Peter Amstutz [Tue, 10 Sep 2019 14:56:09 +0000 (10:56 -0400)]
Merge branch '15499-container-reuse-fix' refs #15499

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15499: Create additional unmodified log collection on finalize!
Peter Amstutz [Mon, 9 Sep 2019 19:37:32 +0000 (15:37 -0400)]
15499: Create additional unmodified log collection on finalize!

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoAdd CurrentApiClient to User fix login failure refs #15558
Peter Amstutz [Mon, 9 Sep 2019 17:17:31 +0000 (13:17 -0400)]
Add CurrentApiClient to User fix login failure refs #15558

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15499: Make reuse tests fail to expose the bug.
Lucas Di Pentima [Fri, 6 Sep 2019 21:28:39 +0000 (18:28 -0300)]
15499: Make reuse tests fail to expose the bug.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago15554 - Fix Crunch1 child jobs
Tom Morris [Fri, 6 Sep 2019 15:58:12 +0000 (11:58 -0400)]
15554 - Fix Crunch1 child jobs

Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

4 years ago15554 - Fix crunchstat-summary for running containers
Tom Morris [Mon, 19 Aug 2019 21:11:44 +0000 (17:11 -0400)]
15554 - Fix crunchstat-summary for running containers

Change the decision logic for when to use the live logs to account for
the fact that the log collection exists now before the container completes.

Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

4 years ago13647: Use cluster config instead of custom keepstore config.
Tom Clegg [Fri, 6 Sep 2019 18:48:17 +0000 (14:48 -0400)]
13647: Use cluster config instead of custom keepstore config.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '15558-alternate-email-addresses' refs #15558
Peter Amstutz [Thu, 5 Sep 2019 21:42:30 +0000 (17:42 -0400)]
Merge branch '15558-alternate-email-addresses' refs #15558

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch 'master' into 15558-alternate-email-addresses
Peter Amstutz [Thu, 5 Sep 2019 21:27:43 +0000 (17:27 -0400)]
Merge branch 'master' into 15558-alternate-email-addresses

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '15361-acr-create-workflow' refs #15361
Peter Amstutz [Thu, 5 Sep 2019 20:32:35 +0000 (16:32 -0400)]
Merge branch '15361-acr-create-workflow' refs #15361

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15558: Fix tests
Peter Amstutz [Thu, 5 Sep 2019 19:00:54 +0000 (15:00 -0400)]
15558: Fix tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '15529-federated-user-accounts' refs #15529
Peter Amstutz [Thu, 5 Sep 2019 18:38:20 +0000 (14:38 -0400)]
Merge branch '15529-federated-user-accounts' refs #15529

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15361: Add missing test files
Peter Amstutz [Thu, 5 Sep 2019 18:32:27 +0000 (14:32 -0400)]
15361: Add missing test files

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>