Tom Clegg [Mon, 22 Apr 2019 00:24:12 +0000 (20:24 -0400)]
15112: Error out right away on unusable manifest.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 22 Apr 2019 00:23:16 +0000 (20:23 -0400)]
15112: Fix log check in test case.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 22 Apr 2019 00:14:16 +0000 (20:14 -0400)]
15112: Show #collections and class->#desired map in dump.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Sun, 21 Apr 2019 00:32:54 +0000 (20:32 -0400)]
15112: Test multiple volumes with same device IDs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Sun, 21 Apr 2019 00:29:42 +0000 (20:29 -0400)]
15112: Fix mount IDs in test case.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Sun, 21 Apr 2019 00:26:44 +0000 (20:26 -0400)]
15112: Use FieldLogger interface so tests can use ctxlog.TestLogger.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Sat, 20 Apr 2019 21:22:41 +0000 (17:22 -0400)]
15112: Report volumes without replicas as "none" in -dump output.
...instead of reporting as "stay" or "none" depending on
whether *other* volumes have replicas.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Fri, 19 Apr 2019 20:32:05 +0000 (16:32 -0400)]
Merge branch '14723-cwl-multiple-file-targets'
refs #14723
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Fri, 19 Apr 2019 18:48:23 +0000 (14:48 -0400)]
Merge, don't replace RemoteClusters refs #13996
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 19 Apr 2019 16:13:11 +0000 (12:13 -0400)]
Set secrets.secret_key_base refs #13996
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Fri, 19 Apr 2019 14:59:24 +0000 (10:59 -0400)]
Merge branch 'master' into 14723-cwl-multiple-file-targets
refs #14723
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Fri, 19 Apr 2019 14:59:06 +0000 (10:59 -0400)]
14723: Adds comments for the changes to StagingPathMapper
Also improves executor exception handling mapping logic.
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Thu, 18 Apr 2019 19:28:50 +0000 (15:28 -0400)]
Merge branch '13996-new-api-config' refs #13996
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Thu, 18 Apr 2019 18:41:29 +0000 (14:41 -0400)]
Merge branch '15002-cancel-completed-container'
refs #15002
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Fri, 12 Apr 2019 13:55:33 +0000 (09:55 -0400)]
15002: Adds admin feature for cancelling completed containers
- Adds documentation and fixed dispatchcloud container test
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Lucas Di Pentima [Wed, 17 Apr 2019 21:31:40 +0000 (18:31 -0300)]
Merge branch '15109-logs-table-admin-docs'
Closes #15109
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Wed, 17 Apr 2019 21:28:56 +0000 (17:28 -0400)]
Merge branch '15002-container-permissions'
refs #15002
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 17 Apr 2019 21:23:08 +0000 (17:23 -0400)]
15002: Test invalid state changes, too.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 17 Apr 2019 20:30:11 +0000 (17:30 -0300)]
15109: Adds missing doc file.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 17 Apr 2019 20:29:08 +0000 (17:29 -0300)]
15109: Adds admin doc section on how to manage the api server's log table.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Wed, 17 Apr 2019 19:45:47 +0000 (15:45 -0400)]
15002: Fix container update permissions.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 17 Apr 2019 19:43:37 +0000 (15:43 -0400)]
Fix "failed" status leaking to subsequent attempt.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 17 Apr 2019 19:42:03 +0000 (15:42 -0400)]
Fix "failed" status leaking to subsequent attempt.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 12 Apr 2019 20:06:20 +0000 (16:06 -0400)]
Update arvbox documentation for devenv config, no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 12 Apr 2019 18:43:50 +0000 (14:43 -0400)]
Add gradle to arvbox, refs #14670
Also adds a new "devenv" config that starts a minimal container
environment with no services and $HOME bind mounted into the
container.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 12 Apr 2019 14:28:50 +0000 (10:28 -0400)]
13996: Improve docs a bit
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 11 Apr 2019 20:47:07 +0000 (16:47 -0400)]
13996: Enable ERB for application.yml and database.yml
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Thu, 11 Apr 2019 19:58:21 +0000 (15:58 -0400)]
14723: Fixes trailing whitespace
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Ward Vandewege [Thu, 11 Apr 2019 19:33:03 +0000 (15:33 -0400)]
Mention the credential expiry date option in the instructions to create Azure
credentials for Node Manager.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Thu, 11 Apr 2019 18:36:15 +0000 (14:36 -0400)]
13996: Documentation for config migration
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 11 Apr 2019 15:42:58 +0000 (11:42 -0400)]
13996: Tweak rake tasks
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 11 Apr 2019 14:34:14 +0000 (10:34 -0400)]
13996: Update rest of code for cleaner config access
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 11 Apr 2019 14:00:26 +0000 (10:00 -0400)]
13996: Don't override name of test db if one was provided in database.yml
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 10 Apr 2019 21:44:29 +0000 (17:44 -0400)]
13996: Update tests for cleaner config access
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 10 Apr 2019 21:07:08 +0000 (17:07 -0400)]
13996: Copy config into OrderedOptions for nicer access
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Wed, 10 Apr 2019 20:31:26 +0000 (16:31 -0400)]
14723: Adds tests for multiple file targets and literal name resolution
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Wed, 10 Apr 2019 18:06:41 +0000 (14:06 -0400)]
13996: Move configuration load earlier, before database setup
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Tue, 9 Apr 2019 20:23:32 +0000 (16:23 -0400)]
14723: Fixes literal mapping and name conflict resolution
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Tue, 9 Apr 2019 17:43:00 +0000 (13:43 -0400)]
13996: Fix legacy_jobs_api check
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 9 Apr 2019 16:14:19 +0000 (12:14 -0400)]
13996: Re-add symlink config.default.yml
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 9 Apr 2019 14:25:45 +0000 (10:25 -0400)]
13996: Fix tests.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Tue, 9 Apr 2019 13:45:04 +0000 (09:45 -0400)]
14723: Mapping each target destination to an input file WIP
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Ward Vandewege [Fri, 5 Apr 2019 17:09:00 +0000 (13:09 -0400)]
15042: handle config.default.yml in our packaging.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 5 Apr 2019 17:07:00 +0000 (13:07 -0400)]
13996: rename config.defaults.yml to config.default.yml, to remain consistent
with our existing default files.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Wed, 3 Apr 2019 20:41:58 +0000 (16:41 -0400)]
13996: Can now use database info from config.yml
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 2 Apr 2019 15:28:23 +0000 (11:28 -0400)]
13996: Refactor, create ConfigLoader class
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 26 Mar 2019 21:52:35 +0000 (17:52 -0400)]
13996: Adjust config:dump to dump active config
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 26 Mar 2019 21:34:30 +0000 (17:34 -0400)]
13996: Update comments
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 26 Mar 2019 21:10:00 +0000 (17:10 -0400)]
13996: Add rake config:diff
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 26 Mar 2019 20:31:06 +0000 (16:31 -0400)]
13996: Fix discovery document remoteHosts
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 26 Mar 2019 18:38:59 +0000 (14:38 -0400)]
13996: Explicitly get string representation of URLs
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 26 Mar 2019 18:07:53 +0000 (14:07 -0400)]
13996: Don't force check for GitInternalDir, breaks tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 26 Mar 2019 17:43:39 +0000 (13:43 -0400)]
13996: Unit tests pass
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 25 Mar 2019 20:39:23 +0000 (16:39 -0400)]
13996: Fixing test WIP
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 25 Mar 2019 15:28:33 +0000 (11:28 -0400)]
13996: Migrate tests to new config
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 22 Mar 2019 21:34:12 +0000 (17:34 -0400)]
13996: More config migrations, refactor some code into config_loader.rb
ActiveSupport::Duration is serialized properly when dumping config.
Non-empty string checks to use !.empty?
Because some configuration parameters could previously be either false
or a string, which are now just an empty string, but empty strings in
Ruby are truthy.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 22 Mar 2019 14:42:51 +0000 (10:42 -0400)]
13996: Parsing durations wip
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 21 Mar 2019 20:39:32 +0000 (16:39 -0400)]
13996: Migrate majority of defaults to config.defaults.yml
API server knows types of config parameters (needed for type coercion,
also useful for type checking.)
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 21 Mar 2019 16:38:09 +0000 (12:38 -0400)]
13996: More config updates
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 20 Mar 2019 21:33:51 +0000 (17:33 -0400)]
13996: Updating API server to use new config object WIP
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 19 Mar 2019 21:50:18 +0000 (17:50 -0400)]
13996: Migrating defaults to new config structure
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 19 Mar 2019 20:40:19 +0000 (16:40 -0400)]
13996: Config migration WIP
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Mon, 8 Apr 2019 14:14:15 +0000 (11:14 -0300)]
Merge branch '14873-api-rails5-upgrade'
Closes #14873
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 8 Apr 2019 14:05:11 +0000 (11:05 -0300)]
14873: Fixes performance test.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Sat, 6 Apr 2019 15:24:53 +0000 (12:24 -0300)]
14873: Updates dependency on our themes_for_rails fork.
The newer version eliminates cwa couple of deprecation warnings.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Sat, 6 Apr 2019 14:29:08 +0000 (11:29 -0300)]
14873: Upgrades missing config settings.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 5 Apr 2019 13:16:37 +0000 (10:16 -0300)]
14873: Fixes typo on schema file.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 5 Apr 2019 12:59:26 +0000 (09:59 -0300)]
14873: Adjusts latest API Server changes to be rails5 worthy.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 5 Apr 2019 12:26:15 +0000 (09:26 -0300)]
Merge branch 'master' into 14873-api-rails5-upgrade
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 4 Apr 2019 22:25:11 +0000 (19:25 -0300)]
14873: Fixes permission benchmark test
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 4 Apr 2019 21:24:50 +0000 (18:24 -0300)]
14873: Changes perftest with benchmark because of unidentified errors.
Didn't want to dilate the migraton any longer because of this. If it's
critical we could investigate further.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Thu, 4 Apr 2019 20:44:19 +0000 (16:44 -0400)]
check-exist uses default python (oops) refs #15040
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 4 Apr 2019 19:11:55 +0000 (16:11 -0300)]
14873: Migrated functional tests to be integration tests.
Making more than 1 request on functional tests produces issues hard
to debug. Instead, those kind of tests should be done as integration tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Thu, 4 Apr 2019 15:13:04 +0000 (11:13 -0400)]
Run check-exist.py in Docker container refs #15040
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Thu, 4 Apr 2019 14:54:49 +0000 (10:54 -0400)]
Merge branch '14484-collection-record-update'
refs #14484
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Thu, 4 Apr 2019 14:41:27 +0000 (10:41 -0400)]
Pin networkx because 2.2 is the last version to support Python 2.7 and 3.4
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 4 Apr 2019 13:50:44 +0000 (10:50 -0300)]
14873: Modifies failing tests for debugging purposes.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Thu, 4 Apr 2019 13:44:07 +0000 (09:44 -0400)]
Fix stale cached container state after successful Cancel.
Avoids needless retries between a successful Cancel and the next sync.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 3 Apr 2019 21:11:25 +0000 (17:11 -0400)]
Merge branch '14796-dispatchcloud-install-docs'
refs #14796
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Wed, 3 Apr 2019 20:42:25 +0000 (16:42 -0400)]
Merge remote-tracking branch 'origin/master' into 14484-collection-record-update
refs #14484
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Wed, 3 Apr 2019 20:24:35 +0000 (16:24 -0400)]
14796: Tweak example boot probe command.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 3 Apr 2019 20:23:17 +0000 (16:23 -0400)]
14796: Add Amazon EC2 configuration example.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Wed, 3 Apr 2019 20:20:26 +0000 (16:20 -0400)]
14484: Adds test for updating a collection with file stats and manifest changes
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Wed, 3 Apr 2019 20:01:26 +0000 (16:01 -0400)]
14484: Improves test coverage and attribute setting performance
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Wed, 3 Apr 2019 15:39:47 +0000 (11:39 -0400)]
14796: Add arvados-dispatch-cloud (experimental) to install docs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 3 Apr 2019 00:45:30 +0000 (21:45 -0300)]
14873: Adds JSONB columns to discovery doc.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 2 Apr 2019 23:26:17 +0000 (20:26 -0300)]
14873: Removes byebug debug call on test.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 2 Apr 2019 22:13:25 +0000 (19:13 -0300)]
14873: Fixes JSON custom types.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 2 Apr 2019 21:36:08 +0000 (18:36 -0300)]
14873: Custom JSON attributes that default to [] or {} when nil.
Previously we used the 'serialize' call to declare a JSONB column as a Hash
or Array and this had the side effect to default to an empty hash or array
when assigning nil (whether was reading from the database or passed as a param).
JSONB columns shouldn't be now declared as serialized because Rails would serialize
their contents twice, but not declaring them makes us lose their side effect.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 2 Apr 2019 21:30:11 +0000 (18:30 -0300)]
14873: Fixes nested params behavior on controller tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 2 Apr 2019 18:37:07 +0000 (15:37 -0300)]
14873: Updates test for fix deprecation warning.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 2 Apr 2019 18:18:17 +0000 (14:18 -0400)]
Give up if test services don't come up.
refs #15044
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 2 Apr 2019 18:11:55 +0000 (14:11 -0400)]
Remove dependency on jq.
refs #15044
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 2 Apr 2019 17:28:10 +0000 (13:28 -0400)]
Merge branch '15044-test-fixes'
closes #15044
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 2 Apr 2019 17:24:45 +0000 (13:24 -0400)]
15044: Sanity-check test services when bringing them up.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Tue, 2 Apr 2019 16:23:44 +0000 (13:23 -0300)]
14873: Reverts previous fixture changes.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Eric Biagiotti [Tue, 2 Apr 2019 15:49:29 +0000 (11:49 -0400)]
14484: Update collection model to overwrite file stats if a change is attempted
Also updates tests and documentation
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Tue, 2 Apr 2019 14:20:45 +0000 (10:20 -0400)]
15044: Require newer mocha.
Without this, old dev environments will not necessarily support the
non-deprecated usage (require 'mocha/minitest').
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 1 Apr 2019 18:58:40 +0000 (14:58 -0400)]
Merge branch 'arvbox-cert-docs' no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Mon, 1 Apr 2019 18:49:42 +0000 (14:49 -0400)]
14844: Adds collections controller tests and updates collection model tests
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
projects / arvados.git / log