arvados.git
4 years ago13647: Return recognizable error when no clusters are defined.
Tom Clegg [Thu, 11 Jul 2019 15:06:12 +0000 (11:06 -0400)]
13647: Return recognizable error when no clusters are defined.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14965: Fixes mkdir name encoding
Eric Biagiotti [Thu, 11 Jul 2019 14:37:24 +0000 (10:37 -0400)]
14965: Fixes mkdir name encoding

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago13647: Load one example value from old keepstore config.
Tom Clegg [Wed, 10 Jul 2019 20:10:50 +0000 (16:10 -0400)]
13647: Load one example value from old keepstore config.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago13647: Suppress "exit status 1" after config-check diff output.
Tom Clegg [Wed, 10 Jul 2019 20:10:52 +0000 (16:10 -0400)]
13647: Suppress "exit status 1" after config-check diff output.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoStop building debian8 and ubuntu1404.
Ward Vandewege [Thu, 11 Jul 2019 13:51:03 +0000 (09:51 -0400)]
Stop building debian8 and ubuntu1404.

refs #15454

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

4 years ago15003: Fix errant warnings on PostgreSQL params and InternalURLs.
Tom Clegg [Wed, 10 Jul 2019 19:09:10 +0000 (15:09 -0400)]
15003: Fix errant warnings on PostgreSQL params and InternalURLs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoUse go 1.12 in package building (part 2).
Ward Vandewege [Wed, 10 Jul 2019 18:37:19 +0000 (14:37 -0400)]
Use go 1.12 in package building (part 2).

refs #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

4 years agoMerge branch '13913-crunchstat-summary-tmpdir'
Tom Morris [Wed, 10 Jul 2019 15:34:03 +0000 (11:34 -0400)]
Merge branch '13913-crunchstat-summary-tmpdir'

Fixes #13913

Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

4 years agoWe require go 1.12, update the run-tests.sh version check.
Ward Vandewege [Wed, 10 Jul 2019 13:47:08 +0000 (09:47 -0400)]
We require go 1.12, update the run-tests.sh version check.

Also use go 1.12 in package building.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

4 years agoOur workbench and api server packages now have a runtime dependency on
Ward Vandewege [Tue, 9 Jul 2019 22:23:12 +0000 (18:23 -0400)]
Our workbench and api server packages now have a runtime dependency on
arvados-server for configuration validation.

Our workbench package now also has a build-time dependency on arvados-server,
because it needs some configuration while precompiling assets.

closes #15449
refs #14812

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

4 years agoFix arvbox demo build. Add Services.Controller to config.yml
Peter Amstutz [Tue, 9 Jul 2019 21:29:40 +0000 (17:29 -0400)]
Fix arvbox demo build.  Add Services.Controller to config.yml

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15318: Updates go components' tests to consider the req-ids.
Lucas Di Pentima [Tue, 9 Jul 2019 21:23:51 +0000 (18:23 -0300)]
15318: Updates go components' tests to consider the req-ids.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoMerge branch '15380-full-text-search-docs'
Eric Biagiotti [Tue, 9 Jul 2019 20:34:14 +0000 (16:34 -0400)]
Merge branch '15380-full-text-search-docs'

refs #15380

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago15421: Elaborate a little more on what include= is useful for
Peter Amstutz [Tue, 9 Jul 2019 19:51:06 +0000 (15:51 -0400)]
15421: Elaborate a little more on what include= is useful for

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14965: Fixes token expiry time mock, byte data, and open mock
Eric Biagiotti [Tue, 9 Jul 2019 19:47:25 +0000 (15:47 -0400)]
14965: Fixes token expiry time mock, byte data, and open mock

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago15421: Document "includes" parameter to group contents endpoint
Peter Amstutz [Tue, 9 Jul 2019 19:42:46 +0000 (15:42 -0400)]
15421: Document "includes" parameter to group contents endpoint

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15318: Updates tests.
Lucas Di Pentima [Tue, 9 Jul 2019 19:38:04 +0000 (16:38 -0300)]
15318: Updates tests.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14965: Fixes replace test encoding
Eric Biagiotti [Tue, 9 Jul 2019 19:26:07 +0000 (15:26 -0400)]
14965: Fixes replace test encoding

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago14965: Fixes magic directory test data
Eric Biagiotti [Tue, 9 Jul 2019 19:24:18 +0000 (15:24 -0400)]
14965: Fixes magic directory test data

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago15318: Adds X-Request-Id value to every error response. Fixes test.
Lucas Di Pentima [Tue, 9 Jul 2019 19:15:32 +0000 (16:15 -0300)]
15318: Adds X-Request-Id value to every error response. Fixes test.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago15318: Updates test to expect X-Request-Id value on error messages.
Lucas Di Pentima [Tue, 9 Jul 2019 19:09:53 +0000 (16:09 -0300)]
15318: Updates test to expect X-Request-Id value on error messages.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14965: Fixes crunchstat test assertion
Eric Biagiotti [Tue, 9 Jul 2019 18:44:06 +0000 (14:44 -0400)]
14965: Fixes crunchstat test assertion

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago14965: Fixes netstat regex string
Eric Biagiotti [Tue, 9 Jul 2019 18:43:02 +0000 (14:43 -0400)]
14965: Fixes netstat regex string

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years agoFix up test gold standard references for new output
Tom Morris [Tue, 9 Jul 2019 18:04:41 +0000 (14:04 -0400)]
Fix up test gold standard references for new output

refs #13913

Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

4 years agoAdd a simple temp disk utilization based recommendation.
Tom Morris [Wed, 3 Jul 2019 17:52:34 +0000 (13:52 -0400)]
Add a simple temp disk utilization based recommendation.

refs #13913

Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

4 years agoGraph temp disk usage
Tom Morris [Tue, 23 Apr 2019 00:48:53 +0000 (20:48 -0400)]
Graph temp disk usage

Plots temp disk space used as well as total available.

Also adds support for multiple metrics per graph and
groups CPU and network stats by category.

refs #13913

Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

4 years ago14965: Add sanity check for netstat.
Tom Clegg [Tue, 9 Jul 2019 17:42:27 +0000 (13:42 -0400)]
14965: Add sanity check for netstat.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14965: Adds net-tools to arvbox for run-test-server.py netstat update
Eric Biagiotti [Tue, 9 Jul 2019 15:29:56 +0000 (11:29 -0400)]
14965: Adds net-tools to arvbox for run-test-server.py netstat update

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago14965: Use netstat instead of lsof to check for listening process.
Tom Clegg [Tue, 9 Jul 2019 14:50:06 +0000 (10:50 -0400)]
14965: Use netstat instead of lsof to check for listening process.

`lsof -t -i tcp:1234` hangs if a zombie process exists on the system.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14965: Run py3 tests in the python3 virtualenv.
Tom Clegg [Tue, 9 Jul 2019 14:49:44 +0000 (10:49 -0400)]
14965: Run py3 tests in the python3 virtualenv.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoArvbox won't create application.yml if arvados_config.rb exists.
Peter Amstutz [Mon, 8 Jul 2019 20:40:42 +0000 (16:40 -0400)]
Arvbox won't create application.yml if arvados_config.rb exists.

refs #14812

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '14812-wb1-new-config' refs #14812
Peter Amstutz [Tue, 9 Jul 2019 14:00:13 +0000 (10:00 -0400)]
Merge branch '14812-wb1-new-config' refs #14812

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Documentation fixes
Peter Amstutz [Tue, 9 Jul 2019 13:59:02 +0000 (09:59 -0400)]
14812: Documentation fixes

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Add note about config migration to upgrading notes
Peter Amstutz [Mon, 8 Jul 2019 20:07:23 +0000 (16:07 -0400)]
14812: Add note about config migration to upgrading notes

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Update API install documentation for new config as well.
Peter Amstutz [Mon, 8 Jul 2019 19:56:48 +0000 (15:56 -0400)]
14812: Update API install documentation for new config as well.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Add documentation about migrating Workbench config.
Peter Amstutz [Mon, 8 Jul 2019 19:04:52 +0000 (15:04 -0400)]
14812: Add documentation about migrating Workbench config.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago"arvbox clone" doesn't clone data, just dependencies. no issue #
Peter Amstutz [Mon, 8 Jul 2019 18:04:49 +0000 (14:04 -0400)]
"arvbox clone" doesn't clone data, just dependencies.  no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Delete legacy load_config.rb
Peter Amstutz [Mon, 8 Jul 2019 17:34:39 +0000 (13:34 -0400)]
14812: Delete legacy load_config.rb

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '15358-fetch-text-encoding' closes #15358
Peter Amstutz [Mon, 8 Jul 2019 15:24:19 +0000 (11:24 -0400)]
Merge branch '15358-fetch-text-encoding' closes #15358

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Remove obsolete defaults from development section
Peter Amstutz [Mon, 8 Jul 2019 15:20:36 +0000 (11:20 -0400)]
14812: Remove obsolete defaults from development section

Fix tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Improve error reporting
Peter Amstutz [Mon, 8 Jul 2019 15:06:05 +0000 (11:06 -0400)]
14812: Improve error reporting

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14287: Add GOPATH/bin to PATH.
Tom Clegg [Thu, 4 Jul 2019 15:19:16 +0000 (11:19 -0400)]
14287: Add GOPATH/bin to PATH.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Remove extra panic after error running goimports.
Tom Clegg [Thu, 4 Jul 2019 13:24:43 +0000 (09:24 -0400)]
14287: Remove extra panic after error running goimports.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Install goimports if needed.
Tom Clegg [Thu, 4 Jul 2019 13:18:24 +0000 (09:18 -0400)]
14287: Install goimports if needed.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14812: Sync config defaults (off by one line)
Peter Amstutz [Wed, 3 Jul 2019 20:35:08 +0000 (16:35 -0400)]
14812: Sync config defaults (off by one line)

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: We can't log the error, might as well make it fatal.
Peter Amstutz [Wed, 3 Jul 2019 20:18:11 +0000 (16:18 -0400)]
14812: We can't log the error, might as well make it fatal.

Rails.logger isn't initialized at this point.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14965: Fix for default command args test
Eric Biagiotti [Wed, 3 Jul 2019 19:35:48 +0000 (15:35 -0400)]
14965: Fix for default command args test

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago14812: Fix a couple more tests
Peter Amstutz [Wed, 3 Jul 2019 19:02:55 +0000 (15:02 -0400)]
14812: Fix a couple more tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14865: Reverts change to read op and fixes StringFile
Eric Biagiotti [Wed, 3 Jul 2019 18:42:56 +0000 (14:42 -0400)]
14865: Reverts change to read op and fixes StringFile

Changed the StringFile readfrom function to return utf-8 encoded bytes. This is what the fuse read op is expecting in Pyhton 3.

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years agoMerge branch '15026-cloudtest'
Tom Clegg [Wed, 3 Jul 2019 18:26:15 +0000 (14:26 -0400)]
Merge branch '15026-cloudtest'

closes #15026

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15026: Fix infinite loop in -destroy-existing.
Tom Clegg [Wed, 3 Jul 2019 18:24:49 +0000 (14:24 -0400)]
15026: Fix infinite loop in -destroy-existing.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15026: Avoid special chars in default instanceSetID.
Tom Clegg [Wed, 3 Jul 2019 18:23:59 +0000 (14:23 -0400)]
15026: Avoid special chars in default instanceSetID.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoUnify string quotation on python example scripts on doc site.
Lucas Di Pentima [Wed, 3 Jul 2019 18:14:08 +0000 (15:14 -0300)]
Unify string quotation on python example scripts on doc site.
No issue #

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago15358: Add encoding option to CollectionFsAccess.open() and use in fetch_text()
Peter Amstutz [Wed, 3 Jul 2019 18:03:33 +0000 (14:03 -0400)]
15358: Add encoding option to CollectionFsAccess.open() and use in fetch_text()

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Tweak config export
Peter Amstutz [Wed, 3 Jul 2019 16:56:58 +0000 (12:56 -0400)]
14812: Tweak config export

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Fix email defaults
Peter Amstutz [Wed, 3 Jul 2019 16:50:52 +0000 (12:50 -0400)]
14812: Fix email defaults

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Move TrustAllContent to Collections
Peter Amstutz [Wed, 3 Jul 2019 14:58:54 +0000 (10:58 -0400)]
14812: Move TrustAllContent to Collections

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15380: Improves list filter search documentation
Eric Biagiotti [Wed, 3 Jul 2019 14:01:45 +0000 (10:01 -0400)]
15380: Improves list filter search documentation

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago14812: Remove commented debug line
Peter Amstutz [Wed, 3 Jul 2019 13:29:44 +0000 (09:29 -0400)]
14812: Remove commented debug line

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Migrate previously missed config items
Peter Amstutz [Wed, 3 Jul 2019 13:20:43 +0000 (09:20 -0400)]
14812: Migrate previously missed config items

Remove defaults from application.defaults.yml that now come from
arvados-server

Migrate comments describing configuration items

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14287: Merge list results from multiple backends.
Tom Clegg [Wed, 3 Jul 2019 13:10:38 +0000 (09:10 -0400)]
14287: Merge list results from multiple backends.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Shut down RailsAPI before trying to reinstall.
Tom Clegg [Tue, 2 Jul 2019 14:10:41 +0000 (10:10 -0400)]
14287: Shut down RailsAPI before trying to reinstall.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14812: Fix lib/config tests
Peter Amstutz [Tue, 2 Jul 2019 17:42:17 +0000 (13:42 -0400)]
14812: Fix lib/config tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14965: Fixes unlink operation encoding
Eric Biagiotti [Tue, 2 Jul 2019 16:11:05 +0000 (12:11 -0400)]
14965: Fixes unlink operation encoding

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago14965: Fixes test for checking the arvmount version
Eric Biagiotti [Tue, 2 Jul 2019 15:59:26 +0000 (11:59 -0400)]
14965: Fixes test for checking the arvmount version

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years agoTweak arvbox build order, API server depends on arvados-server
Peter Amstutz [Mon, 1 Jul 2019 21:50:31 +0000 (17:50 -0400)]
Tweak arvbox build order, API server depends on arvados-server

refs #14812

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Tweak install order because API server depends on arvados-server
Peter Amstutz [Mon, 1 Jul 2019 21:49:23 +0000 (17:49 -0400)]
14812: Tweak install order because API server depends on arvados-server

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Migrate UserProfileFormFields
Peter Amstutz [Mon, 1 Jul 2019 20:35:29 +0000 (16:35 -0400)]
14812: Migrate UserProfileFormFields

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15380: Adds documentation for text search filtering
Eric Biagiotti [Mon, 1 Jul 2019 19:24:26 +0000 (15:24 -0400)]
15380: Adds documentation for text search filtering

- Fixes typo in the subproperties filtering section
- Adds a link to list common resource method page from the CLI reference page

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago14812: Get defaults and config from arvados-server
Peter Amstutz [Mon, 1 Jul 2019 18:12:44 +0000 (14:12 -0400)]
14812: Get defaults and config from arvados-server

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Fixing up integration tests
Peter Amstutz [Fri, 28 Jun 2019 21:24:01 +0000 (17:24 -0400)]
14812: Fixing up integration tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Passing unit and functional tests
Peter Amstutz [Fri, 28 Jun 2019 16:33:41 +0000 (12:33 -0400)]
14812: Passing unit and functional tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Fix test
Peter Amstutz [Thu, 27 Jun 2019 20:39:25 +0000 (16:39 -0400)]
14812: Fix test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: First pass migrating tests.
Peter Amstutz [Thu, 27 Jun 2019 20:35:28 +0000 (16:35 -0400)]
14812: First pass migrating tests.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Finish first pass migrating config items
Peter Amstutz [Thu, 27 Jun 2019 19:18:39 +0000 (15:18 -0400)]
14812: Finish first pass migrating config items

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Config migration WIP
Peter Amstutz [Thu, 27 Jun 2019 17:41:13 +0000 (13:41 -0400)]
14812: Config migration WIP

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch 'wb-test-runner-fixes'
Lucas Di Pentima [Mon, 1 Jul 2019 16:06:12 +0000 (13:06 -0300)]
Merge branch 'wb-test-runner-fixes'
No issue #

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoMerge branch '15026-cloudtest'
Tom Clegg [Mon, 1 Jul 2019 14:56:41 +0000 (10:56 -0400)]
Merge branch '15026-cloudtest'

refs #15026

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15026: Clean up confusing variable name.
Tom Clegg [Mon, 1 Jul 2019 14:55:26 +0000 (10:55 -0400)]
15026: Clean up confusing variable name.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoFix arvados-health using controller listener config.
Tom Clegg [Fri, 28 Jun 2019 18:08:22 +0000 (14:08 -0400)]
Fix arvados-health using controller listener config.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoFixes test runner execution so that it can run individual tests on rails 5
Lucas Di Pentima [Fri, 28 Jun 2019 15:40:48 +0000 (12:40 -0300)]
Fixes test runner execution so that it can run individual tests on rails 5

No issue #

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoMerge branch '15209-python-arv-deps-pinned'
Lucas Di Pentima [Thu, 27 Jun 2019 18:59:53 +0000 (15:59 -0300)]
Merge branch '15209-python-arv-deps-pinned'
Closes #15209

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago15209: Fixes pysdk dependency strings on pam, fuse & nodemanager.
Lucas Di Pentima [Thu, 27 Jun 2019 18:14:10 +0000 (15:14 -0300)]
15209: Fixes pysdk dependency strings on pam, fuse & nodemanager.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoMerge branch '14287-controller-structure'
Tom Clegg [Thu, 27 Jun 2019 17:34:08 +0000 (13:34 -0400)]
Merge branch '14287-controller-structure'

refs #14287

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch 'master' into 15209-python-arv-deps-pinned
Lucas Di Pentima [Thu, 27 Jun 2019 17:28:46 +0000 (14:28 -0300)]
Merge branch 'master' into 15209-python-arv-deps-pinned

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago15026: Add missing notextile tags.
Tom Clegg [Thu, 27 Jun 2019 14:58:46 +0000 (10:58 -0400)]
15026: Add missing notextile tags.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15209: Makes python components packages ask for current PySDK version.
Lucas Di Pentima [Thu, 27 Jun 2019 14:54:21 +0000 (11:54 -0300)]
15209: Makes python components packages ask for current PySDK version.

This make arvados-cwl-runner, arvados-nodemanager, arvados-fuse and arvados-pam
to ask for the current arvados-python-client version when building packages.
Ask pip to look for packages on the PySDK sdist directory, so that current and
not yet uploaded versions can be asked as dependency.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14287: Merge branch 'master'
Tom Clegg [Thu, 27 Jun 2019 14:50:58 +0000 (10:50 -0400)]
14287: Merge branch 'master'

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15026: Add cloudtest page to admin docs.
Tom Clegg [Wed, 26 Jun 2019 20:17:02 +0000 (16:17 -0400)]
15026: Add cloudtest page to admin docs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14965: Fixes the create operation encoding
Eric Biagiotti [Wed, 26 Jun 2019 20:02:39 +0000 (16:02 -0400)]
14965: Fixes the create operation encoding

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago15026: Log duration of each list/create/destroy/exec operation.
Tom Clegg [Wed, 26 Jun 2019 19:19:08 +0000 (15:19 -0400)]
15026: Log duration of each list/create/destroy/exec operation.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '15026-cloudtest'
Tom Clegg [Wed, 26 Jun 2019 18:55:31 +0000 (14:55 -0400)]
Merge branch '15026-cloudtest'

refs #15026

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Don't delete non-writable attrs in create/update reqs.
Tom Clegg [Wed, 26 Jun 2019 17:40:36 +0000 (13:40 -0400)]
14287: Don't delete non-writable attrs in create/update reqs.

This is already handled by clients and/or RailsAPI anyway.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge remote-tracking branch 'origin/master' into 14965-arv-mount-py-three
Eric Biagiotti [Wed, 26 Jun 2019 15:39:04 +0000 (11:39 -0400)]
Merge remote-tracking branch 'origin/master' into 14965-arv-mount-py-three

refs #14965

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago14965: Fixes read operation encoding
Eric Biagiotti [Wed, 26 Jun 2019 15:38:48 +0000 (11:38 -0400)]
14965: Fixes read operation encoding

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago15026: Treat bad-tags and boot-timeout as deferred errors.
Tom Clegg [Tue, 25 Jun 2019 20:24:28 +0000 (16:24 -0400)]
15026: Treat bad-tags and boot-timeout as deferred errors.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15026: Remove redundant TagVerifier use.
Tom Clegg [Tue, 25 Jun 2019 20:23:08 +0000 (16:23 -0400)]
15026: Remove redundant TagVerifier use.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '15396-trgm-docs'
Eric Biagiotti [Tue, 25 Jun 2019 18:44:31 +0000 (14:44 -0400)]
Merge branch '15396-trgm-docs'

Refs #15396

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years agoMerge branch '14874-post-merge-fixes'
Lucas Di Pentima [Tue, 25 Jun 2019 18:30:41 +0000 (15:30 -0300)]
Merge branch '14874-post-merge-fixes'
Refs #14874

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14287: Support federated requests for /used_by and /provenance.
Tom Clegg [Tue, 25 Jun 2019 18:10:19 +0000 (14:10 -0400)]
14287: Support federated requests for /used_by and /provenance.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>