Fernando Monserrat [Mon, 2 Apr 2018 18:33:04 +0000 (15:33 -0300)]
refs #13200 Merge branch '13200-new-package-versioning-jb'
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Wed, 28 Mar 2018 17:56:09 +0000 (14:56 -0300)]
13200: remove verbose bash on run-build-packages.sh
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Wed, 28 Mar 2018 14:35:33 +0000 (11:35 -0300)]
13200: remove verbose bash on build packages
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Mon, 26 Mar 2018 14:54:12 +0000 (11:54 -0300)]
13200: Fix format gitinfo on all the services
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Mon, 26 Mar 2018 14:37:43 +0000 (11:37 -0300)]
13200: format gitinfo on all the services
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Mon, 26 Mar 2018 13:44:11 +0000 (10:44 -0300)]
13200: format gitinfo on all the services
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Javier Bértoli [Fri, 23 Mar 2018 21:50:23 +0000 (18:50 -0300)]
Trying some str formatting
refs #13200
Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@veritasgenetics.com>
Javier Bértoli [Fri, 23 Mar 2018 21:39:14 +0000 (18:39 -0300)]
Trying some str formatting
refs #13200
Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@veritasgenetics.com>
Javier Bértoli [Fri, 23 Mar 2018 20:02:57 +0000 (17:02 -0300)]
Add functions to return the python version for packaging
refs #13200
Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@veritasgenetics.com>
Fernando Monserrat [Fri, 23 Mar 2018 19:54:08 +0000 (16:54 -0300)]
13200:rollback tests
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Fri, 23 Mar 2018 19:49:06 +0000 (16:49 -0300)]
13200:test update on version in gittaggers on sdk python
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Fri, 23 Mar 2018 19:45:20 +0000 (16:45 -0300)]
13200:test update on version in gittaggers on sdk python
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Fri, 23 Mar 2018 19:11:42 +0000 (16:11 -0300)]
13200:test update on version in gittaggers on sdk python
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Fri, 23 Mar 2018 18:41:02 +0000 (15:41 -0300)]
13200:test update on version in gittaggers on sdk python
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Fri, 23 Mar 2018 16:58:33 +0000 (13:58 -0300)]
13200:test to remove prefix on python
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Fri, 23 Mar 2018 16:48:30 +0000 (13:48 -0300)]
13200:test to remove prefix on python
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Fri, 23 Mar 2018 16:22:44 +0000 (13:22 -0300)]
13200:test to remove prefix on python
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Fri, 23 Mar 2018 14:50:48 +0000 (11:50 -0300)]
13200:test to remove adding 01 to python packages
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Thu, 22 Mar 2018 21:22:11 +0000 (18:22 -0300)]
13200:fix complete package name
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Javier Bértoli [Thu, 22 Mar 2018 18:10:12 +0000 (15:10 -0300)]
Varnames
refs #13200
Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@veritasgenetics.com>
Fernando Monserrat [Thu, 22 Mar 2018 17:33:03 +0000 (14:33 -0300)]
13200:fix slash on centos repo
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Thu, 22 Mar 2018 17:16:09 +0000 (14:16 -0300)]
13200:remove repo_subdir for centos
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Thu, 22 Mar 2018 15:30:46 +0000 (12:30 -0300)]
13200:add verbose just to test new commit behaviour on jenkins
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Wed, 21 Mar 2018 20:40:00 +0000 (17:40 -0300)]
13200:remove verbose bash on run-library
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Javier Bértoli [Wed, 21 Mar 2018 17:17:41 +0000 (14:17 -0300)]
My silly attempt
refs #13200
Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@veritasgenetics.com>
Fernando Monserrat [Tue, 20 Mar 2018 21:17:01 +0000 (18:17 -0300)]
13200:test changes to not build package if no change is present
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Tue, 20 Mar 2018 20:46:46 +0000 (17:46 -0300)]
13200:test changes to not build package if no change is present
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Tue, 20 Mar 2018 20:10:51 +0000 (17:10 -0300)]
13200:test changes to not build package if no change is present
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Tue, 20 Mar 2018 19:43:49 +0000 (16:43 -0300)]
13200:test changes to not build package if no change is present
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Tue, 20 Mar 2018 18:39:48 +0000 (15:39 -0300)]
13200:small change to output and to test if python packages are rebuilt when there is no change
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Mon, 19 Mar 2018 17:47:58 +0000 (14:47 -0300)]
13200:small change to output and to test if python packages are rebuilt when there is no change
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Mon, 19 Mar 2018 17:09:47 +0000 (14:09 -0300)]
13200:small change to output and to test if python packages are rebuilt when there is no change
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Mon, 19 Mar 2018 15:20:30 +0000 (12:20 -0300)]
13200:test run library
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Nico Cesar [Mon, 19 Mar 2018 14:18:09 +0000 (10:18 -0400)]
13200: minor changes to make it more readable
Arvados-DCO-1.1-Signed-off-by: Nico Cesar ncesar@veritasgenetics.com
Fernando Monserrat [Fri, 16 Mar 2018 17:56:07 +0000 (14:56 -0300)]
13200:fix python version with git from tag
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Fri, 16 Mar 2018 17:37:54 +0000 (14:37 -0300)]
13200:fix python version with git from tag
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Fri, 16 Mar 2018 17:28:44 +0000 (14:28 -0300)]
13200:fix python gittagers version with latest git tag and timestamp
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Fri, 16 Mar 2018 16:24:17 +0000 (13:24 -0300)]
13200:fix python gittagers version with latest git tag and timestamp
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Wed, 14 Mar 2018 19:24:15 +0000 (16:24 -0300)]
13200:fix python gittagers version with latest git tag and timestamp
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Wed, 14 Mar 2018 18:48:26 +0000 (15:48 -0300)]
13200:fix python gittagers version with latest git tag and timestamp
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Wed, 14 Mar 2018 17:15:45 +0000 (14:15 -0300)]
13200:fix python gittagers version with latest git tag and timestamp
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Tue, 13 Mar 2018 14:11:29 +0000 (11:11 -0300)]
13200:fix python package version with latest git tag and timestamp
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Mon, 12 Mar 2018 18:26:06 +0000 (15:26 -0300)]
13200:new version using git tag latest and timestamp only
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Mon, 12 Mar 2018 18:12:22 +0000 (15:12 -0300)]
13200:new version using git tag latest and timestamp only
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Mon, 12 Mar 2018 16:05:56 +0000 (13:05 -0300)]
13200:test new job with timestamp only removing hash
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Fernando Monserrat [Thu, 8 Mar 2018 20:19:15 +0000 (17:19 -0300)]
13200:test new job with timestamp only removing hash
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Lucas Di Pentima [Fri, 30 Mar 2018 18:37:50 +0000 (15:37 -0300)]
Merge branch '13168-cr-modified-user'
Closes #13168
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 29 Mar 2018 19:25:12 +0000 (16:25 -0300)]
13168: Use helper to avoid updating 'modified_by_user_uuid' field on CRs.
When a container's state changes, the related container requests are updated
using the system user privileges, now these updates don't assign the system user's
uuid to the container requests 'modified_by_user_uuid' field.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 29 Mar 2018 16:31:29 +0000 (13:31 -0300)]
13168: Remove commented code.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Wed, 28 Mar 2018 17:44:01 +0000 (13:44 -0400)]
doc: consistency fix in SSO install documentation.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Tue, 27 Mar 2018 21:12:13 +0000 (18:12 -0300)]
Merge branch '13166-nodemanager-whishlist'
Closes #13166
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 26 Mar 2018 21:16:22 +0000 (18:16 -0300)]
13166: Integration test fix.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 26 Mar 2018 21:15:46 +0000 (18:15 -0300)]
13166: Sort optimization & wishlist ordering testing.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Mon, 26 Mar 2018 15:39:44 +0000 (11:39 -0400)]
Bump cwltool version for bugfix, refs #13245
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Sun, 25 Mar 2018 01:16:47 +0000 (21:16 -0400)]
build scripts: only run the package tests on packages built since the
previous time the package test script ran. This speeds up the build
pipeline significantly.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Fri, 23 Mar 2018 18:27:33 +0000 (14:27 -0400)]
Merge branch '13245-cwl-dir-literal' closes #13245
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 23 Mar 2018 18:21:25 +0000 (14:21 -0400)]
Merge branch '13212-unavailable-output-workunit' closes #13212
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 23 Mar 2018 18:18:50 +0000 (14:18 -0400)]
Merge branch '7931-replicas-by-volume'
refs #7931
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 23 Mar 2018 18:11:35 +0000 (14:11 -0400)]
7931: Merge branch 'master' into 7931-replicas-by-volume
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 23 Mar 2018 17:18:50 +0000 (13:18 -0400)]
7931: Update json field tags on trash/pull requests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 23 Mar 2018 17:03:28 +0000 (13:03 -0400)]
13212: Fix tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 23 Mar 2018 14:52:44 +0000 (10:52 -0400)]
13212: Replace "Output data not available" with "uuid (Unavailable)"
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 23 Mar 2018 14:34:29 +0000 (10:34 -0400)]
Add cookbook examples for uploading and downloading a file from a
Collection in Python, closes #13253
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 23 Mar 2018 14:07:24 +0000 (10:07 -0400)]
Fix cwl extension doc typo. refs #13179
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 23 Mar 2018 13:59:44 +0000 (09:59 -0400)]
Fix cwl extension doc typo. closes #13179
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 22 Mar 2018 20:07:54 +0000 (16:07 -0400)]
13245: Bump cwltool version
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 22 Mar 2018 18:56:21 +0000 (14:56 -0400)]
13245: Sort InitialWorkDir contents to fix conflicts and redundant mounts.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 22 Mar 2018 17:20:32 +0000 (13:20 -0400)]
7931: OTBE, prefer readonly replicas; they can't be trashed anyway.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 22 Mar 2018 16:58:57 +0000 (12:58 -0400)]
7931: Don't bother trying to trash replicas on readonly mounts.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 20 Mar 2018 17:10:38 +0000 (13:10 -0400)]
7931: Fix format/type mismatch.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 19 Mar 2018 17:19:41 +0000 (13:19 -0400)]
7931: Trash excess replicas when a server has more than one.
Previously a given server was classified only as "having" or "not
having" a replica, regardless of how many it reported. With this
change, once there are already enough distinct replicas on other
servers, excess replicas will be trashed -- even if they are on the
same server as a replica that is being retained.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Sun, 18 Mar 2018 06:48:43 +0000 (02:48 -0400)]
7931: keep-balance: use keepstore /mounts APIs instead of /index.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Tue, 20 Mar 2018 18:04:00 +0000 (15:04 -0300)]
Merge branch '12167-arvput-log-on-signals'
Refs #12167
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 20 Mar 2018 17:39:49 +0000 (13:39 -0400)]
12167: Stop waiting for arv-put to start up when logs appear.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Mon, 19 Mar 2018 18:02:35 +0000 (15:02 -0300)]
13166: Add descriptive comments to every integration test arguments.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Mon, 19 Mar 2018 17:02:25 +0000 (13:02 -0400)]
Merge branch '13208-permission-performance' refs #13208
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Mon, 19 Mar 2018 14:42:30 +0000 (11:42 -0300)]
13166: Limit wishlist to (max_nodes - up_nodes)
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 16 Mar 2018 20:32:18 +0000 (17:32 -0300)]
13166: Order slurm queue by priority
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Fri, 16 Mar 2018 18:13:37 +0000 (14:13 -0400)]
13208: Refactor permission checking to improve query performance
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 15 Mar 2018 19:36:19 +0000 (15:36 -0400)]
Merge branch '13138-request-error' refs #13138
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 15 Mar 2018 19:01:10 +0000 (16:01 -0300)]
12167: Report request-id when receiving SIGINT on arv-put.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Thu, 15 Mar 2018 19:28:02 +0000 (15:28 -0400)]
Fix 'arvbox log' to propagate terminal size, no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 15 Mar 2018 19:12:38 +0000 (15:12 -0400)]
Merge branch '13100-crunch-run-memory'
refs #13100
refs #11583
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 15 Mar 2018 16:45:52 +0000 (12:45 -0400)]
11583: 13100: Fix memory leak in test suite.
Something (an unterminated goroutine?) holds a reference to the keep
client, which (in the test suite) holds a reference to the last block
it wrote. Releasing the reference to the block reduces test suite
memory use by about 2.6 GB.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 15 Mar 2018 14:57:59 +0000 (10:57 -0400)]
13100: Fix memory leak (64MiB per stream in output/log collection).
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 14 Mar 2018 19:10:56 +0000 (15:10 -0400)]
Merge branch '12552-wf-priority'
refs #12552
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Wed, 14 Mar 2018 18:46:22 +0000 (14:46 -0400)]
13138: Gather arvados API errors under "RequestError" class.
Don't print stack trace for RequestError, because they are expected
conditions when there is an error in the request.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Wed, 14 Mar 2018 18:15:15 +0000 (14:15 -0400)]
12552: Merge branch 'master' into 12552-wf-priority
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 14 Mar 2018 18:13:11 +0000 (14:13 -0400)]
12552: Fix workflow parent priority test.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Wed, 14 Mar 2018 15:09:20 +0000 (11:09 -0400)]
Merge branch '13135-cwl-secrets' closes #13135
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 14 Mar 2018 14:48:58 +0000 (10:48 -0400)]
13135: Code cleanup & comments.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 13 Mar 2018 20:23:17 +0000 (16:23 -0400)]
Fix arvbox workbench for updated passenger, refs #12737
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 13 Mar 2018 14:44:15 +0000 (10:44 -0400)]
12552: Prioritize containers according to top-level requests.
This change ensures:
* a high-priority container and all of its descendants are prioritized
ahead of lower-priority containers and their descendants.
* when two top-level containers are requested using equal priority,
the earlier-submitted container has higher priority.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 13 Mar 2018 17:31:36 +0000 (13:31 -0400)]
13135: Fix test
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 13 Mar 2018 14:05:19 +0000 (10:05 -0400)]
13135: Update docs
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 12 Mar 2018 20:45:39 +0000 (16:45 -0400)]
13135: Add secrets test to arvados-tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 12 Mar 2018 19:18:50 +0000 (15:18 -0400)]
13135: Secrets not supported with --api=jobs
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 12 Mar 2018 18:37:56 +0000 (14:37 -0400)]
13135: Update tests for secret_mounts
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 12 Mar 2018 17:48:57 +0000 (13:48 -0400)]
13135: Remove testing workarounds
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 9 Mar 2018 21:57:42 +0000 (16:57 -0500)]
13135: Handle secrets in file literals.
Also check for secrets leaking into command line or environment, and
fail if detected.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
projects / arvados.git / log