Tom Clegg [Thu, 30 Mar 2017 20:56:59 +0000 (16:56 -0400)]
11100: Clean up permission checks.
Tom Clegg [Thu, 30 Mar 2017 16:34:12 +0000 (12:34 -0400)]
11100: Add container_requests.output_ttl field. Fix validation of output/log changes on finalized CRs.
Tom Clegg [Thu, 30 Mar 2017 17:41:22 +0000 (13:41 -0400)]
Merge branch '7709-api-rails4' (partial)
refs #7709
refs #11100
Tom Clegg [Tue, 21 Mar 2017 15:59:40 +0000 (11:59 -0400)]
7709: De-duplicate "ensure unique name" implementations.
Tom Clegg [Tue, 21 Mar 2017 16:49:06 +0000 (12:49 -0400)]
7709: Do not set job_readable when it won't be used.
Tom Clegg [Tue, 21 Mar 2017 15:56:17 +0000 (11:56 -0400)]
7709: Leave container_request alone when applying default keep_cache_ram value.
Tom Clegg [Tue, 21 Mar 2017 16:01:33 +0000 (12:01 -0400)]
7709: Fix tests (count existing links before adding new ones).
Tom Clegg [Thu, 30 Mar 2017 14:29:47 +0000 (10:29 -0400)]
11209: Restore missing import.
refs #11209
Tom Clegg [Thu, 30 Mar 2017 01:23:24 +0000 (21:23 -0400)]
11355: Arvados gems accept json 2.x.
refs #11355
Tom Clegg [Wed, 29 Mar 2017 15:51:55 +0000 (11:51 -0400)]
Merge branch '11235-log-retryable'
refs #11235
Tom Clegg [Wed, 29 Mar 2017 15:49:49 +0000 (11:49 -0400)]
11235: Log a message when a job is interrupted by node failure.
...and say what's going to happen as a result, even if that is not
"giving up" yet.
radhika [Wed, 29 Mar 2017 15:44:42 +0000 (11:44 -0400)]
closes #3821
Merge branch '3821-collection-file-manage'
Peter Amstutz [Wed, 29 Mar 2017 15:43:20 +0000 (11:43 -0400)]
Fix invalid records in API collections test fixture and improve error message
to include both values. Incidentally revealed by adding PDH index to
collections table. refs #11361
radhika [Wed, 29 Mar 2017 15:28:28 +0000 (11:28 -0400)]
3821: improve the tooltip on rename file option.
Peter Amstutz [Wed, 29 Mar 2017 14:54:20 +0000 (10:54 -0400)]
Fix packaging for python-arvados-cwl-runner refs #11333
Tom Clegg [Wed, 29 Mar 2017 04:26:24 +0000 (00:26 -0400)]
Merge branch '11361-pdh-index'
refs #11361
Tom Clegg [Tue, 28 Mar 2017 22:01:25 +0000 (18:01 -0400)]
11361: Add pdh index to collections table.
Tom Clegg [Tue, 28 Mar 2017 20:13:18 +0000 (16:13 -0400)]
Merge branch '11209-unmount-replace'
refs #11209
Peter Amstutz [Tue, 28 Mar 2017 20:01:50 +0000 (16:01 -0400)]
Merge branch '11333-cwl-phone-home' closes #11333
radhika [Tue, 28 Mar 2017 20:01:06 +0000 (16:01 -0400)]
3821: update test assertion that randomly fails; in fact, I don't see how it ever worked with that syntax.
Peter Amstutz [Tue, 28 Mar 2017 16:57:25 +0000 (12:57 -0400)]
11333: Add explicit version pin on 'typing'
Peter Amstutz [Tue, 28 Mar 2017 16:44:20 +0000 (12:44 -0400)]
11332: Suppress phone-home behavior in check_exists by recognizing
http://arvados.org/cwl and returning True.
Peter Amstutz [Tue, 28 Mar 2017 19:50:02 +0000 (15:50 -0400)]
Merge branch '11332-cwl-filenames' closes #11332
radhika [Tue, 28 Mar 2017 19:26:39 +0000 (15:26 -0400)]
Merge branch 'master' into 3821-collection-file-manage
radhika [Tue, 28 Mar 2017 18:07:42 +0000 (14:07 -0400)]
3821: collection viewed from another object
radhika [Tue, 28 Mar 2017 16:54:56 +0000 (12:54 -0400)]
3821: The "Remove selected files" option should only be presented if the user can update the collection.
Peter Amstutz [Mon, 27 Mar 2017 21:29:58 +0000 (17:29 -0400)]
11332: Override relaxed path checks to be even more relaxed, and bump cwltool &
schema salad pin for hashes-in-filenames fix.
radhika [Tue, 28 Mar 2017 15:33:19 +0000 (11:33 -0400)]
3821: attr_accessor not needed on collection "filename"
radhika [Tue, 28 Mar 2017 15:25:35 +0000 (11:25 -0400)]
3821: add an integration test to rename a file in a collection
Tom Clegg [Tue, 28 Mar 2017 05:52:56 +0000 (01:52 -0400)]
11209: Test using ./bin/arv-mount from source dir.
radhika [Mon, 27 Mar 2017 23:37:45 +0000 (19:37 -0400)]
3821: integration test to remove files from a collection
Tom Clegg [Mon, 27 Mar 2017 22:43:56 +0000 (18:43 -0400)]
11209: Replace "--unmount /path/..." with "--unmount-all /path".
Tom Clegg [Mon, 27 Mar 2017 22:36:48 +0000 (18:36 -0400)]
11209: Fix daemon mode.
DaemonContext cannot happen after listen_for_events().
radhika [Mon, 27 Mar 2017 22:35:56 +0000 (18:35 -0400)]
3821: collection controller tests for remove and rename files.
Peter Amstutz [Mon, 27 Mar 2017 20:22:46 +0000 (16:22 -0400)]
Update cwl test_submit refs #10401
Peter Amstutz [Mon, 27 Mar 2017 19:54:41 +0000 (15:54 -0400)]
Merge branch '10401-run-upload-dir' refs #10401
Peter Amstutz [Fri, 24 Mar 2017 18:55:02 +0000 (14:55 -0400)]
10401: Support in arv-run for uploading Directories.
Tom Clegg [Mon, 27 Mar 2017 16:26:32 +0000 (12:26 -0400)]
Pin ws4py <0.4 (our websocket tests fail on 0.4.1)
No issue #
radhika [Fri, 24 Mar 2017 20:58:20 +0000 (16:58 -0400)]
3821: Rename collection file path
Tom Clegg [Fri, 24 Mar 2017 19:59:56 +0000 (15:59 -0400)]
11209: Remove unused imports.
Tom Clegg [Fri, 24 Mar 2017 19:59:26 +0000 (15:59 -0400)]
11209: Add tests for --unmount and --replace flags.
Tom Clegg [Fri, 24 Mar 2017 19:55:24 +0000 (15:55 -0400)]
11209: Fix missing import. Use context handler for standalone mode.
Tom Clegg [Fri, 24 Mar 2017 18:42:30 +0000 (14:42 -0400)]
Remove debug printf.
No issue #
Tom Clegg [Fri, 24 Mar 2017 18:37:22 +0000 (14:37 -0400)]
Remove -i flag from Rails3 pg_dump invocation.
No issue #
radhika [Fri, 24 Mar 2017 15:37:00 +0000 (11:37 -0400)]
3821: remove selection file in collection file row
radhika [Fri, 24 Mar 2017 14:26:56 +0000 (10:26 -0400)]
3821: added 'Remove selected files' to collection#show page.
Peter Amstutz [Fri, 24 Mar 2017 13:31:36 +0000 (09:31 -0400)]
Merge branch '8567-docker-migrator' refs #8567
Tom Clegg [Thu, 23 Mar 2017 22:06:01 +0000 (18:06 -0400)]
11209: Try unmounting at least once even if timeout=0.
Tom Clegg [Fri, 17 Mar 2017 20:32:10 +0000 (16:32 -0400)]
11209: "--unmount /path/..." unmounts /path and all fuse mounts below it.
Tom Clegg [Thu, 16 Mar 2017 20:49:49 +0000 (16:49 -0400)]
11209: Add arv-mount --unmount and --replace flags
Peter Amstutz [Thu, 23 Mar 2017 20:16:33 +0000 (16:16 -0400)]
Merge branch '11325-no-broken-nodes' refs #11323, refs #11324, refs #11325
Peter Amstutz [Thu, 23 Mar 2017 17:30:35 +0000 (13:30 -0400)]
11323: Don't try to offer_arvados_pair on unpaired nodes which are being shut down.
Peter Amstutz [Thu, 23 Mar 2017 18:05:51 +0000 (14:05 -0400)]
11324: Fix crash in NodeManagerDaemonActor when receiving a node_can_shutdown
message for a node that has already been shut down.
Tom Clegg [Thu, 23 Mar 2017 20:10:48 +0000 (16:10 -0400)]
Merge branch '10766-install-ws'
closes #10766
Tom Clegg [Thu, 23 Mar 2017 19:56:44 +0000 (15:56 -0400)]
Merge branch '11065-rotate-logs'
closes #11065
Tom Clegg [Thu, 23 Mar 2017 19:56:16 +0000 (15:56 -0400)]
11065: Avoid scientific notation in PostgreSQL literal.
Tom Clegg [Thu, 23 Mar 2017 19:18:51 +0000 (15:18 -0400)]
11065: Update comments.
Tom Clegg [Thu, 23 Mar 2017 18:51:21 +0000 (14:51 -0400)]
Merge branch '11221-always-restart-services'
closes #11221
Peter Amstutz [Thu, 23 Mar 2017 17:23:54 +0000 (13:23 -0400)]
11325: Remove "broken node" check. Assume if the node really isn't
functioning, it should be "down" in SLURM anyway. Remove test_broken_node_not_counted because broken node check is removed.
Tom Clegg [Thu, 23 Mar 2017 18:05:06 +0000 (14:05 -0400)]
10766: Fix copy-paste error in godoc link.
Tom Clegg [Thu, 23 Mar 2017 17:46:37 +0000 (13:46 -0400)]
10766: Migrate install guide from puma to arvados-ws.
Tom Clegg [Thu, 23 Mar 2017 14:56:34 +0000 (10:56 -0400)]
Merge branch '10669-safe-http-cache'
closes #10669
Tom Clegg [Thu, 23 Mar 2017 14:43:01 +0000 (10:43 -0400)]
10669: Improve error reporting in test case.
Peter Amstutz [Thu, 23 Mar 2017 13:52:39 +0000 (09:52 -0400)]
Merge branch '11255-docker-host-networking' closes #11255
Peter Amstutz [Thu, 23 Mar 2017 13:49:56 +0000 (09:49 -0400)]
11255: Fix whitespace
Peter Amstutz [Wed, 22 Mar 2017 16:56:34 +0000 (12:56 -0400)]
11255: Add documentation about configuration to enable host networking always.
Peter Amstutz [Thu, 23 Mar 2017 13:49:31 +0000 (09:49 -0400)]
11255: Add -container-enable-networking and -container-network-mode options.
Lucas Di Pentima [Thu, 23 Mar 2017 13:33:14 +0000 (10:33 -0300)]
Merge branch '11170-stale-squeue-procs'
Closes #11170
Tom Clegg [Thu, 23 Mar 2017 04:19:38 +0000 (00:19 -0400)]
10669: pep8
Tom Clegg [Thu, 23 Mar 2017 04:16:26 +0000 (00:16 -0400)]
10669: Test that SafeHTTPCache is actually used.
Tom Clegg [Wed, 22 Mar 2017 21:57:47 +0000 (17:57 -0400)]
10669: Only delete *.tmp when cleaning old cache files.
Tom Clegg [Wed, 22 Mar 2017 21:45:32 +0000 (17:45 -0400)]
10699: Delete >2-day old cache entries.
Tom Clegg [Wed, 22 Mar 2017 21:44:52 +0000 (17:44 -0400)]
10669: Bust old (possibly broken) cache entries by naming our files *.tmp
Tom Clegg [Wed, 22 Mar 2017 19:16:37 +0000 (15:16 -0400)]
10669: Robust cache for httplib2
Lucas Di Pentima [Wed, 22 Mar 2017 20:18:59 +0000 (17:18 -0300)]
Merge branch '10218-record-node-info'
Closes #10218
Lucas Di Pentima [Wed, 22 Mar 2017 19:56:58 +0000 (16:56 -0300)]
10218: Avoid running df commands more than necessary. Updated test to check for disk inodes report. Added deferred Close() call on CallRaw reader.
Tom Clegg [Wed, 22 Mar 2017 19:30:52 +0000 (15:30 -0400)]
11065: Merge branch 'master' into 11065-rotate-logs
Lucas Di Pentima [Wed, 22 Mar 2017 19:07:37 +0000 (16:07 -0300)]
10218: Added calls to "df -i" to record free i-nodes. Combined stdout and stderr when running node info commands.
Lucas Di Pentima [Wed, 22 Mar 2017 18:51:13 +0000 (15:51 -0300)]
10218: Ask for disk space on 2 specific filesystems (/ & /tmp) to avoid having the df command to return an error on special cases.
Lucas Di Pentima [Wed, 22 Mar 2017 18:45:49 +0000 (15:45 -0300)]
10218: Merge branch 'master' into 10218-record-node-info
Lucas Di Pentima [Wed, 22 Mar 2017 18:01:48 +0000 (15:01 -0300)]
10218: Get the container record directly from the API server, instead of Marshaling runner.Container.
Tom Clegg [Wed, 22 Mar 2017 17:33:55 +0000 (13:33 -0400)]
Merge branch '7709-sdk-cli-active_support'
refs #7709
Tom Clegg [Wed, 22 Mar 2017 16:07:48 +0000 (12:07 -0400)]
Fix broken link from crunch2 to crunch1 docs.
refs #6520
Tom Clegg [Wed, 22 Mar 2017 16:04:43 +0000 (12:04 -0400)]
Do not let golang.org/x/tools/cmd/bundle get ahead of Ruby bundler.
refs https://dev.arvados.org/projects/arvados/wiki/Emacs_and_Go
No issue #
Peter Amstutz [Wed, 22 Mar 2017 15:57:17 +0000 (11:57 -0400)]
8567: Add start_docker and kill_docker functions with wait loops.
Tom Clegg [Sun, 19 Mar 2017 01:12:45 +0000 (21:12 -0400)]
7709: arvados-cli allows activesupport>=4
Lucas Di Pentima [Wed, 22 Mar 2017 14:18:55 +0000 (11:18 -0300)]
11170: Calling close method from an ensure block.
Tom Clegg [Wed, 22 Mar 2017 14:18:43 +0000 (10:18 -0400)]
11065: Defer audit log cleanup until after_commit.
Lucas Di Pentima [Wed, 22 Mar 2017 13:21:17 +0000 (10:21 -0300)]
11170: Updated tests to reflect the use of IO instead of File.
Peter Amstutz [Tue, 21 Mar 2017 21:37:30 +0000 (17:37 -0400)]
8567: Make sure /root/.cache/arvados/docker is tempdir volume mount as well.
Peter Amstutz [Tue, 21 Mar 2017 18:02:09 +0000 (14:02 -0400)]
8567: Use vfs Docker graph driver for maximum compatability. --dry-run reports
maximum image size. Add --tempdir option.
Peter Amstutz [Tue, 21 Mar 2017 15:41:15 +0000 (11:41 -0400)]
Fix test broken by change of default behavior in arv-keepdocker. refs #8567
Tom Clegg [Tue, 21 Mar 2017 15:39:20 +0000 (11:39 -0400)]
11065: Delete old audit logs.
Lucas Di Pentima [Mon, 20 Mar 2017 21:39:43 +0000 (18:39 -0300)]
11170: Treat the squeue/scancel calls as files instead of treating them as processes. Calling close when finished reading from them.
Lucas Di Pentima [Mon, 20 Mar 2017 19:07:40 +0000 (16:07 -0300)]
10218: Merge branch 'master' into 10218-record-node-info
Peter Amstutz [Mon, 20 Mar 2017 19:04:38 +0000 (15:04 -0400)]
If API server doesn't publish supported Docker image versions, make that an
error instead of a warning (can be overridden with --force-image-format)
refs #8567
Lucas Di Pentima [Mon, 20 Mar 2017 18:56:55 +0000 (15:56 -0300)]
11170: Set up a thread to reap the status of squeue runs so that they don't become zombie processes.
Peter Amstutz [Mon, 20 Mar 2017 18:34:17 +0000 (14:34 -0400)]
Merge branch '8567-docker-migrator' refs #8567
Peter Amstutz [Mon, 20 Mar 2017 15:58:37 +0000 (11:58 -0400)]
8567: Bugfix check for existing repo+tag links.
radhika [Mon, 20 Mar 2017 15:04:44 +0000 (11:04 -0400)]
closes #11290
Merge branch '11290-caret-font'
projects / arvados.git / log