Tom Clegg [Mon, 17 Sep 2018 14:07:35 +0000 (10:07 -0400)]
13994: Use entire token for blob signatures.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 13 Sep 2018 18:43:28 +0000 (14:43 -0400)]
13994: Fix import cycle.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 11 Sep 2018 16:55:05 +0000 (12:55 -0400)]
13994: Fix deadlock in keepstore tests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 11 Sep 2018 16:54:41 +0000 (12:54 -0400)]
13994: Proxy to remote cluster if +R hint given.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 11 Sep 2018 15:40:10 +0000 (11:40 -0400)]
Merge branch '13993-federated-collection' refs #13993
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 11 Sep 2018 15:05:34 +0000 (11:05 -0400)]
13993: Add TestGetLocalCollection
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 10 Sep 2018 21:04:37 +0000 (17:04 -0400)]
13993: Need to explicitly handle paths that don't end in /
Otherwise Go will generate a 301 Moved Permanently from collection to collections/
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 10 Sep 2018 20:20:32 +0000 (16:20 -0400)]
13993: Don't export internal types
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 10 Sep 2018 20:18:01 +0000 (16:18 -0400)]
13993: Consolidate SignedLocatorPattern with keepclient.SignedLocatorRe
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 7 Sep 2018 19:52:52 +0000 (15:52 -0400)]
13993: Support for federated collection requests by uuid
Do remote record retrevial using a salted token, update the block
signatures to "remote" signatures (changing +A to +R and adding the
remote cluster id), and return it to the original client.
Refactor routing and proxying of federated requeststo provide hooks to
support this and future types of requests.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 2 Aug 2018 20:09:52 +0000 (16:09 -0400)]
13146: Returns real json response
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 2 Aug 2018 19:35:17 +0000 (15:35 -0400)]
13146: Projects shared with me WIP
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Thu, 6 Sep 2018 14:46:10 +0000 (10:46 -0400)]
A new version of our libcloud fork is available.
refs #14150
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Thu, 6 Sep 2018 14:37:42 +0000 (10:37 -0400)]
Merge branch '11065-optional-audit-logging'
refs #11065
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 6 Sep 2018 14:29:25 +0000 (10:29 -0400)]
11065: Merge branch 'master' into 11065-optional-audit-logging
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Wed, 5 Sep 2018 21:37:57 +0000 (17:37 -0400)]
Add http_timeout to runtimeContext refs #13542
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 5 Sep 2018 20:22:31 +0000 (16:22 -0400)]
Merge branch '14082-round-off' refs #14082
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 5 Sep 2018 20:21:39 +0000 (16:21 -0400)]
Merge branch '13973-max-cr-priority' refs #13973
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 5 Sep 2018 19:44:46 +0000 (15:44 -0400)]
Fix gofmt in slurm.go refs #14110
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 5 Sep 2018 18:56:46 +0000 (14:56 -0400)]
Merge branch 'wtsi/13809-root_url-protocol-port-configuration'
refs #13809
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 5 Sep 2018 18:53:17 +0000 (14:53 -0400)]
Merge branch 'wtsi/python-api-timeout' refs #13542
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 5 Sep 2018 18:47:19 +0000 (14:47 -0400)]
Merge branch 'wtsi/14110-c-d-s-limit-slurm-concurrency' refs #14110
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 5 Sep 2018 18:16:28 +0000 (14:16 -0400)]
13973: Use a straightforward maximum() query to compute max priority
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 5 Sep 2018 17:57:04 +0000 (13:57 -0400)]
14082: Round up numeric values in container request that must be integers
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 4 Sep 2018 19:45:45 +0000 (15:45 -0400)]
Merge branch '14152-s3-v4-signature'
refs #14152
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 4 Sep 2018 19:37:57 +0000 (15:37 -0400)]
Merge branch '14008-containers-index'
refs #14008
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 4 Sep 2018 15:25:51 +0000 (11:25 -0400)]
Add test case for filtering on is_trashed in groups#contents.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 4 Sep 2018 15:25:18 +0000 (11:25 -0400)]
Remove redundant test case.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 4 Sep 2018 19:03:58 +0000 (15:03 -0400)]
14008: Merge branch 'master' into 14008-containers-index
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 4 Sep 2018 18:00:04 +0000 (14:00 -0400)]
14152: Use V4 signer for S3 in regions that use V4 for EC2.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 4 Sep 2018 15:36:15 +0000 (11:36 -0400)]
Merge branch '14009-container-reuse-index'
refs #14009
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Ward Vandewege [Tue, 4 Sep 2018 02:21:14 +0000 (22:21 -0400)]
14153: Merge branch '14153-support-ruby-2.3.7'
closes #14153
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Mon, 3 Sep 2018 19:53:27 +0000 (15:53 -0400)]
Change dependency from google-api-client to cure-google-api-client so
that we can use ruby 2.3.7
refs #14153
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Tue, 4 Sep 2018 02:15:56 +0000 (22:15 -0400)]
Make sure to bump the dependency on the arvados gems to the 1.2 series.
refs #14032
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Mon, 3 Sep 2018 18:37:44 +0000 (14:37 -0400)]
Documentation fix: make the use of $uuid_prefix consistent.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Sat, 25 Aug 2018 14:53:32 +0000 (10:53 -0400)]
Revert ruamel.yaml build to 0.14.12 refs #14075
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Sat, 25 Aug 2018 13:19:15 +0000 (09:19 -0400)]
Fix test for changed expectation refs #13973
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Sat, 25 Aug 2018 00:37:41 +0000 (20:37 -0400)]
'trollop' gem renamed to 'optimist' fix build no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 24 Aug 2018 21:27:35 +0000 (17:27 -0400)]
Build ruamel.yaml 0.15.26 for a-c-r
This is last version before a serious regression was introduced in
parsing flow mapping
https://bitbucket.org/ruamel/yaml/issues/227/regression-parsing-flow-mapping
This affects 0.15.27 to 0.15.51
0.15.52 haven't been tested because they have a different
compatibility problem:
https://github.com/common-workflow-language/schema_salad/pull/195
refs #14075
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 24 Aug 2018 19:45:08 +0000 (15:45 -0400)]
Merge branch '13456-controller-timeout'
refs #13456
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 23 Aug 2018 18:32:03 +0000 (14:32 -0400)]
13456: Use HTTPRequestTimeout in test suite.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 24 Aug 2018 19:33:56 +0000 (15:33 -0400)]
Merge branch '13973-child-priority' refs #13973
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 24 Aug 2018 19:33:05 +0000 (15:33 -0400)]
Merge branch '14075-uploadfiles' refs #14075
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 24 Aug 2018 19:28:16 +0000 (15:28 -0400)]
Merge branch 'master' into 14075-uploadfiles
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 24 Aug 2018 17:51:56 +0000 (13:51 -0400)]
14075: Tweak ruamel.yaml verision range in setup.py
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 24 Aug 2018 16:12:47 +0000 (12:12 -0400)]
14075: Fix cwl unit tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Joshua C. Randall [Mon, 20 Aug 2018 16:31:29 +0000 (17:31 +0100)]
fix slow queries in uploadfiles
change uploadfiles to include pdh in name of collection rather then using ensure_unique_names=True
also don't bother listing existing empty collections
Arvados-DCO-1.1-Signed-off-by: Joshua C. Randall <jcrandall@alum.mit.edu>
Tom Clegg [Fri, 24 Aug 2018 16:06:56 +0000 (12:06 -0400)]
Merge branch '13959-timeouts-and-logging'
fixes #13959
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 24 Aug 2018 16:06:18 +0000 (12:06 -0400)]
13959: Merge branch 'master' into 13959-timeouts-and-logging
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 24 Aug 2018 16:01:50 +0000 (12:01 -0400)]
14008: Merge branch 'master' into 14008-containers-index
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 24 Aug 2018 15:57:07 +0000 (11:57 -0400)]
14008: Add container queue index.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 24 Aug 2018 15:36:10 +0000 (11:36 -0400)]
14009: Index containers table for reuse searches.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 24 Aug 2018 14:13:44 +0000 (10:13 -0400)]
13973: Tweak test for inheriting CR priority
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Fri, 24 Aug 2018 05:50:41 +0000 (01:50 -0400)]
We need to build ws 0.4.2 for ubuntu1404 and ubuntu1604
refs #13823
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 24 Aug 2018 05:49:40 +0000 (01:49 -0400)]
Switch to use ha.pool.sks-keyservers.net everywhere, which is more reliable
than pool.sks-keyservers.net
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Thu, 23 Aug 2018 21:39:56 +0000 (17:39 -0400)]
Improvement for run-tests.sh: support multiple occurrences of the
--only argument - syntax fix.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Thu, 23 Aug 2018 21:27:18 +0000 (17:27 -0400)]
Bugfix for run-tests.sh: run sdk/R install if docs are being built,
they rely on it.
Improvement for run-tests.sh: support multiple occurrences of the
--only argument.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Joshua C. Randall [Thu, 23 Aug 2018 19:49:44 +0000 (19:49 +0000)]
limit concurrent slurm commands
use a semaphore channel to limit concurrent sbatch/scancel/scontrol commands to 3.
squeue is already limited to one at a time.
fixes 14110
Arvados-DCO-1.1-Signed-off-by: Joshua C. Randall <jcrandall@alum.mit.edu>
Ward Vandewege [Thu, 23 Aug 2018 16:16:08 +0000 (12:16 -0400)]
Fix for run-tests.sh: do not run sdk/R install if the --skip sdk/R option is
set.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Thu, 23 Aug 2018 13:01:27 +0000 (09:01 -0400)]
Merge branch '13823-bionic'
refs #13823
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Wed, 22 Aug 2018 12:40:41 +0000 (08:40 -0400)]
Add support for package testing to our ubuntu 18.04 packages.
refs #13823
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Wed, 22 Aug 2018 12:38:34 +0000 (08:38 -0400)]
Remove spurious error output in package testing script.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Wed, 22 Aug 2018 12:38:34 +0000 (08:38 -0400)]
Remove spurious error output in package testing script.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Wed, 22 Aug 2018 10:29:33 +0000 (06:29 -0400)]
Merge branch 'master' into 13823-bionic
refs #13823
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Wed, 22 Aug 2018 10:18:53 +0000 (06:18 -0400)]
We no longer build for Ubuntu 12.04
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Tue, 21 Aug 2018 17:18:26 +0000 (13:18 -0400)]
13959: Fix test regexps.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 21 Aug 2018 16:51:22 +0000 (12:51 -0400)]
13959: Merge branch 'master' into 13959-timeouts-and-logging
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 21 Aug 2018 15:55:51 +0000 (11:55 -0400)]
Merge branch '13924-collections-index'
closes #13924
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 21 Aug 2018 15:30:05 +0000 (11:30 -0400)]
Merge branch '14082-numbertype' refs #14082
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 21 Aug 2018 14:20:33 +0000 (10:20 -0400)]
Merge branch '14020-webdav-cors'
closes #14020
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 21 Aug 2018 01:51:04 +0000 (21:51 -0400)]
14082: Fix test
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 21 Aug 2018 01:20:21 +0000 (21:20 -0400)]
14082: Datatype validation for command, environment, mounts
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 20 Aug 2018 14:05:47 +0000 (10:05 -0400)]
14008: Add index to speed up dispatcher queries.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 20 Aug 2018 14:03:00 +0000 (10:03 -0400)]
13924: Drop redundant index.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 20 Aug 2018 13:17:26 +0000 (09:17 -0400)]
13924: Add index for PDH lookups.
Commit
2ee4ee2bb666835c41019b475dd2e286604bdd35 changed PDH lookup
queries to sort on trash_at, which can be slow without an index.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 20 Aug 2018 13:42:59 +0000 (09:42 -0400)]
14020: Allow WebDAV headers in CORS requests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 17 Aug 2018 17:13:47 +0000 (13:13 -0400)]
Merge branch '13146-shared-rails' refs #13146
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 17 Aug 2018 16:03:08 +0000 (12:03 -0400)]
13973: Set priority of child container requests based on parent
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 17 Aug 2018 15:23:38 +0000 (11:23 -0400)]
13146: Clarify documentation for shared endpoint
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Fri, 17 Aug 2018 15:01:58 +0000 (12:01 -0300)]
Merge branch '13340-wb-keep-links'
Closes #13340
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Fri, 17 Aug 2018 14:38:39 +0000 (10:38 -0400)]
13959: Merge branch 'master' into 13959-timeouts-and-logging
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 17 Aug 2018 14:32:11 +0000 (10:32 -0400)]
13933: Update error message expectation.
refs #13933
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 17 Aug 2018 14:19:29 +0000 (10:19 -0400)]
13959: Use logrus for crunch-dispatch-local logging.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Thu, 16 Aug 2018 21:40:14 +0000 (18:40 -0300)]
13340: Enhance regex to match non quoted locators
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Thu, 16 Aug 2018 21:25:11 +0000 (17:25 -0400)]
Merge branch '13933-dispatch-batch-size'
closes #13933
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 16 Aug 2018 21:23:59 +0000 (17:23 -0400)]
13933: Update error text check.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 16 Aug 2018 21:23:50 +0000 (17:23 -0400)]
13933: Fix formatting.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 16 Aug 2018 19:36:30 +0000 (15:36 -0400)]
13146: Don't return "included" field unless non-nil
Update documention/comments.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 16 Aug 2018 19:38:42 +0000 (15:38 -0400)]
13959: Use logrus for crunch-dispatch-slurm logging.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 16 Aug 2018 19:25:39 +0000 (15:25 -0400)]
13146: "included" is returned as_api_response.
Fix applying column select to "included" records.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 16 Aug 2018 19:08:13 +0000 (15:08 -0400)]
13146: Apply select clause to included objects
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 16 Aug 2018 18:53:21 +0000 (14:53 -0400)]
13959: Default 5-minute timeout for API calls.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 16 Aug 2018 18:48:36 +0000 (14:48 -0400)]
13146: Add "include" parameter and rename return field to "included"
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 16 Aug 2018 18:11:45 +0000 (14:11 -0400)]
Merge branch '13752-index-all-filenames'
refs #13752
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 16 Aug 2018 17:52:07 +0000 (13:52 -0400)]
13752: Don't rewrite entire file_names column during the migration.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 15 Aug 2018 20:49:05 +0000 (17:49 -0300)]
13340: Correctly show all locator links on a text.
This solve 2 issues:
* Show all locator links on text lines with multiple locators
* Fix the locator regex so that it doesn't include incorrect text parts
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 16 Aug 2018 15:23:57 +0000 (12:23 -0300)]
13340: Add test to expose bug
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Thu, 16 Aug 2018 15:31:36 +0000 (11:31 -0400)]
13146: FUSE tests pass
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 16 Aug 2018 15:04:25 +0000 (11:04 -0400)]
13146: FUSE uses the "groups.shared" API for shared/ directory.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 16 Aug 2018 14:38:55 +0000 (10:38 -0400)]
13146: Add tests for shared endpoint.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
projects / arvados.git / log