Lucas Di Pentima [Mon, 5 Mar 2018 20:20:01 +0000 (17:20 -0300)]
12268: Update nodemanager dependency on libcloud 2.3.0
As we're now using the official release, this update run-test.sh will
try to install from PyPI.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Mon, 5 Mar 2018 18:38:43 +0000 (13:38 -0500)]
Merge branch '13140-cwl-conformance' refs #13140
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Sun, 4 Mar 2018 02:58:06 +0000 (21:58 -0500)]
When running inside a virtualenv, pip still uses the ~/.cache/pip cache
directory, unless it is explicitly overridden with XDG_CACHE_HOME.
In the test script, stop using pip's cache directory altogether.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Sat, 3 Mar 2018 00:40:40 +0000 (19:40 -0500)]
Stop running sdk/R install if sdk/R is not being tested. It is
really expensive on a clean install (~6 minutes).
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Fri, 2 Mar 2018 21:12:17 +0000 (16:12 -0500)]
13140: Fix call to docker.get_image()
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 2 Mar 2018 19:58:43 +0000 (14:58 -0500)]
12552: Remove superfluous arithmetic.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 2 Mar 2018 19:53:05 +0000 (14:53 -0500)]
12552: Fix starvation in test case.
refs #12552
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Fri, 2 Mar 2018 19:22:46 +0000 (16:22 -0300)]
Merge branch '12737-arvados-gem-dependency'
Refs #12737
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Fri, 2 Mar 2018 19:18:10 +0000 (14:18 -0500)]
13140: Fix tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Fri, 2 Mar 2018 19:04:11 +0000 (14:04 -0500)]
The crunch-dispatch-slurm binary has a new dependency on the
lib/dispatchcloud directory. Reflect that in the build scripts.
refs #13078
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Thu, 1 Mar 2018 19:57:10 +0000 (16:57 -0300)]
12737: Fix activesupport dependency from arvados gem.
Upper version requirement was avoiding gem installation when upgrading rails
to a version >= 4.2.6.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Fri, 2 Mar 2018 15:00:12 +0000 (10:00 -0500)]
13140: Bump cwltool version
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 1 Mar 2018 21:41:07 +0000 (16:41 -0500)]
Merge branch '12552-slurm-priority'
refs #12552
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
jiayong2 [Wed, 28 Feb 2018 17:47:15 +0000 (17:47 +0000)]
Merge branch '11850-singlecontainer-max-requirements'
closes #11850
Arvados-DCO-1.1-Signed-off-by: Jiayong Li <jiayong@math.mit.edu>
jiayong2 [Wed, 28 Feb 2018 17:39:42 +0000 (17:39 +0000)]
Merge branch 'master' into 11850-singlecontainer-max-requirements
Arvados-DCO-1.1-Signed-off-by: Jiayong Li <jiayong@math.mit.edu>
Tom Clegg [Wed, 28 Feb 2018 16:27:29 +0000 (11:27 -0500)]
Merge branch '13078-slurm-feature-test'
refs #13078
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 28 Feb 2018 16:27:12 +0000 (11:27 -0500)]
12552: Improve PrioritySpread docs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 27 Feb 2018 22:09:20 +0000 (17:09 -0500)]
13078: Accept "no nodes" as an indication that features are OK.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 27 Feb 2018 22:01:19 +0000 (17:01 -0500)]
13078: Use --test-only instead of invalid --gres to check features.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 27 Feb 2018 18:05:13 +0000 (13:05 -0500)]
Merge branch '12315-exclude-child-procs'
closes #12315
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 27 Feb 2018 16:08:19 +0000 (11:08 -0500)]
12315: Tidy up test params.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 26 Feb 2018 21:27:08 +0000 (16:27 -0500)]
Merge branch '13037-composer-link' closes #13037
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
jiayong2 [Mon, 26 Feb 2018 20:11:08 +0000 (20:11 +0000)]
Merge branch 'master' into 11850-singlecontainer-max-requirements
Arvados-DCO-1.1-Signed-off-by: Jiayong Li <jiayong@math.mit.edu>
jiayong2 [Mon, 26 Feb 2018 20:06:59 +0000 (20:06 +0000)]
Take sum for outdir requirement in single container
Arvados-DCO-1.1-Signed-off-by: Jiayong Li <jiayong@math.mit.edu>
Lucas Di Pentima [Mon, 26 Feb 2018 18:22:44 +0000 (15:22 -0300)]
Merge branch '12707-storage-classes-columns'
Closes #12707
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 26 Feb 2018 17:26:41 +0000 (14:26 -0300)]
12707: Adds default value setting on collection creation.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Mon, 26 Feb 2018 16:14:18 +0000 (11:14 -0500)]
12552: Fix accidental textile link syntax.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Wed, 14 Feb 2018 16:22:57 +0000 (11:22 -0500)]
13037: Add hidden api_token to Composer button to skip extra login
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 26 Feb 2018 15:42:16 +0000 (10:42 -0500)]
12552: Document PrioritySpread. Default to 10 if not configured.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 26 Feb 2018 14:46:39 +0000 (09:46 -0500)]
12552: Skip extra lookup.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 26 Feb 2018 14:46:31 +0000 (09:46 -0500)]
12552: Add slurm-renice test cases.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Fri, 23 Feb 2018 18:09:30 +0000 (15:09 -0300)]
12707: Some fixes and additions on storage classes:
* Remove the unnecessary default values from model.
* Fixes and tests on storage classes columns.
* Adds tests for 'exists' filter on jsonb array columns.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Fri, 23 Feb 2018 21:29:06 +0000 (16:29 -0500)]
12315: Propagate show_children to infinite scroll pages. Fix & add tests.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 23 Feb 2018 19:31:40 +0000 (14:31 -0500)]
12315: Add abstract show_children query parameter
Can't use requesting_container_uuid filter directly because it breaks
query of jobs and pipelines. Add abstract show_children query
parameter. Default is to hide children processes.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 23 Feb 2018 18:28:50 +0000 (13:28 -0500)]
Merge branch 'wtsi/13113-acr-collectioncache-retries' refs #13113
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 23 Feb 2018 18:26:59 +0000 (13:26 -0500)]
Merge branch 'wtsi/13093-crunch-dispatch-slurm-add-mem' refs #13093
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 23 Feb 2018 16:15:44 +0000 (11:15 -0500)]
Merge branch '13064-arv-mount-perf' closes #13064
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 23 Feb 2018 16:15:03 +0000 (11:15 -0500)]
13064: Add comment about has_ref() and in_use() checks
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Fri, 16 Feb 2018 23:47:49 +0000 (20:47 -0300)]
12707: Add storage classes attributes to collections.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Thu, 22 Feb 2018 20:58:56 +0000 (15:58 -0500)]
13064: Explicitly precompile regexes used in manifest parsing
Seems to improve parsing time roughly 5-10%
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 22 Feb 2018 19:47:42 +0000 (14:47 -0500)]
13064: Add __slots__ to ArvadosFile and FuseArvadosFile
More than 50% decrease in memory footprint for large collections!!!
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 22 Feb 2018 19:09:33 +0000 (14:09 -0500)]
13064: Check has_ref before checking in_use
Kernel behavior seems to be that if a file is referenced, its parents
remain referenced too. This means has_ref() exits early when a
collection is not candidate for eviction.
By contrast, in_use() doesn't increment references on parents, so it
requires a full tree walk to determine if a collection is a candidate
for eviction.
Switching the order of the checks retains correctness but greatly
improves real-world performance.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Joshua C. Randall [Thu, 15 Feb 2018 18:50:19 +0000 (18:50 +0000)]
add ReserveExtraRAM config option to crunch-dispatch-slurm
Arvados-DCO-1.1-Signed-off-by: Joshua C. Randall <jcrandall@alum.mit.edu>
Joshua Randall [Wed, 21 Feb 2018 20:51:56 +0000 (20:51 +0000)]
Fix CollectionCache to pass num_retries to CollectionReader
Arvados-DCO-1.1-Signed-off-by: Joshua C. Randall <jcrandall@alum.mit.edu>
Peter Amstutz [Wed, 21 Feb 2018 20:46:32 +0000 (15:46 -0500)]
Merge branch '11645-keepstore-storageclasses' closes #11645
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 21 Feb 2018 20:42:48 +0000 (15:42 -0500)]
11645: Add tests that StorageClasses is loaded from config
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Wed, 21 Feb 2018 20:13:02 +0000 (15:13 -0500)]
Fix typos/grammar.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Wed, 21 Feb 2018 17:06:04 +0000 (12:06 -0500)]
Merge branch '13106-keepclient-slot' closes #13106
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 21 Feb 2018 17:05:36 +0000 (12:05 -0500)]
13106: Add note about the test.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 21 Feb 2018 16:56:39 +0000 (11:56 -0500)]
11645: Add support for StorageClasses in volume config.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 21 Feb 2018 01:32:44 +0000 (20:32 -0500)]
13106: Add test confirming deadlock
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 20 Feb 2018 21:29:22 +0000 (16:29 -0500)]
13106: Ensure cache slot is reset on error
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Sat, 17 Feb 2018 04:18:17 +0000 (23:18 -0500)]
12315: Add "exclude child processes" checkbox to /all_processes.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 16 Feb 2018 19:09:30 +0000 (14:09 -0500)]
Merge branch '13098-assign-hostname'
refs #13098
refs #12199
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 16 Feb 2018 18:55:24 +0000 (13:55 -0500)]
13098: 12199: Fix hostname assigned but not saved.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 16 Feb 2018 17:48:34 +0000 (12:48 -0500)]
Merge branch '13063-update-azure-sdk'
refs #13063
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 16 Feb 2018 17:41:48 +0000 (12:41 -0500)]
13063: Use upstream azure-sdk-for-go.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 16 Feb 2018 16:41:01 +0000 (11:41 -0500)]
Merge branch '13090-eval-timeout' closes #13090
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 16 Feb 2018 15:53:49 +0000 (10:53 -0500)]
13090: Pass through --eval-timeout to container command line.
Also adds a check so that --ignore-docker-for-reuse can't be used with
containers, refs #12666
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 16 Feb 2018 07:29:22 +0000 (02:29 -0500)]
12552: Adjust SLURM niceness to bring priority into desired order.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 15 Feb 2018 23:17:52 +0000 (18:17 -0500)]
12552: Add SLURM niceness calculator.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 15 Feb 2018 20:31:33 +0000 (15:31 -0500)]
Add missing parameter to update call.
fixes #12199
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 15 Feb 2018 19:51:43 +0000 (14:51 -0500)]
Merge branch '11876-R-deps' refs #11876
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 15 Feb 2018 18:34:11 +0000 (13:34 -0500)]
11876: Pin R deps that are installed from gitub.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 15 Feb 2018 18:38:55 +0000 (13:38 -0500)]
Merge branch '13063-update-azure-sdk'
closes #13063
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Thu, 15 Feb 2018 16:53:26 +0000 (13:53 -0300)]
Merge branch '11454-remove-button-removal'
Refs #11454
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Thu, 15 Feb 2018 16:07:24 +0000 (11:07 -0500)]
R SDK documentation link fix refs #11876
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 15 Feb 2018 16:00:57 +0000 (13:00 -0300)]
11454: Code readability enhancement.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Thu, 15 Feb 2018 15:55:37 +0000 (10:55 -0500)]
13063: Don't use azure default delay-and-retry loop.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Thu, 15 Feb 2018 14:57:31 +0000 (11:57 -0300)]
11454: Don't show 'Remove' session button when listed on remoteHosts.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Wed, 14 Feb 2018 21:16:12 +0000 (16:16 -0500)]
13063: Update azure storage client library.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 14 Feb 2018 16:53:04 +0000 (13:53 -0300)]
Merge branch '12863-wb-cr-status'
Closes #12863
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 14 Feb 2018 16:08:05 +0000 (13:08 -0300)]
Merge branch '13023-wb-log-newlines'
Closes #13023
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Wed, 14 Feb 2018 15:33:49 +0000 (10:33 -0500)]
Merge branch '12199-dispatch-to-node-type'
refs #12199
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 14 Feb 2018 15:20:02 +0000 (10:20 -0500)]
Merge branch '13025-keepstore-metrics'
refs #13025
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 14 Feb 2018 15:10:24 +0000 (10:10 -0500)]
12199: Fix job_uuid missing from nodes#update response.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 13 Feb 2018 20:10:40 +0000 (15:10 -0500)]
12199: Ensure scratch space for tmp mounts when choosing node type.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Tue, 13 Feb 2018 19:45:59 +0000 (16:45 -0300)]
13023: Workaround firefox copy&paste bug on jobs & pipeline log viewers.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 13 Feb 2018 19:13:39 +0000 (16:13 -0300)]
13023: Fix integration test.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 13 Feb 2018 16:40:18 +0000 (11:40 -0500)]
12199: Move services/dispatchcloud to lib/dispatchcloud.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Tue, 13 Feb 2018 16:19:47 +0000 (13:19 -0300)]
13023: Fixes related tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 13 Feb 2018 16:01:30 +0000 (13:01 -0300)]
13023: Replaces div with pre tags on 'Recent logs' viewer.
This is to workaround a Firefox bug:
https://bugzilla.mozilla.org/show_bug.cgi?id=
1174452
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 13 Feb 2018 13:56:44 +0000 (10:56 -0300)]
12863: Adds CR's state label on description cell.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 12 Feb 2018 22:41:13 +0000 (19:41 -0300)]
12863: Adds column showing process status on project pages.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Mon, 12 Feb 2018 22:28:22 +0000 (17:28 -0500)]
12199: Merge branch 'master' into 12199-dispatch-to-node-type
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 12 Feb 2018 22:06:13 +0000 (17:06 -0500)]
12199: Improve race handling in busywait.
The previous implementation was "call f() until it's truthy, then
assert f()". The assertion fails if f() returns truthy but then
returns falsy on the next call.
The new implementation doesn't call f() again after it returns truthy
once.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 12 Feb 2018 21:48:15 +0000 (16:48 -0500)]
12199: Fix errant uses of size.name that should be size.id.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 12 Feb 2018 21:39:23 +0000 (16:39 -0500)]
12199: Update integration tests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
jiayong2 [Mon, 12 Feb 2018 20:05:29 +0000 (20:05 +0000)]
Merge branch 'master' into 11850-singlecontainer-max-requirements
Arvados-DCO-1.1-Signed-off-by: Jiayong Li <jiayong@math.mit.edu>
jiayong2 [Mon, 12 Feb 2018 20:03:56 +0000 (20:03 +0000)]
Add changes to arvworkflow.py for taking the max requirement
Arvados-DCO-1.1-Signed-off-by: Jiayong Li <jiayong@math.mit.edu>
Tom Clegg [Mon, 12 Feb 2018 19:53:50 +0000 (14:53 -0500)]
13025: Merge branch 'master' into 13025-keepstore-metrics
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 12 Feb 2018 19:51:17 +0000 (14:51 -0500)]
13025: Revert returning WroteStatus()==200 if no header was written.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Mon, 12 Feb 2018 18:41:44 +0000 (15:41 -0300)]
Merge branch '11454-wb-federated-search'
Closes #11454
Refs #12959
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 12 Feb 2018 17:15:11 +0000 (14:15 -0300)]
11454: Avoid instantiating new SessionDB before autoRedirectToHomeCluster()
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 12 Feb 2018 16:40:11 +0000 (13:40 -0300)]
11454: A couple of fixes/enhancements:
* Only try to migrate non federated sessions on /sessions page.
* autoLoadRemoteHosts only loads missing remotes, without reactivating
disabled sessions.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Mon, 12 Feb 2018 16:30:43 +0000 (11:30 -0500)]
13025: Lint.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Mon, 12 Feb 2018 16:12:07 +0000 (13:12 -0300)]
11454: Removes workbench links on /sessions page.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Mon, 12 Feb 2018 02:27:32 +0000 (21:27 -0500)]
Merge branch '12840-cancelled-pipeline'
fixes #12840
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 12 Feb 2018 02:24:48 +0000 (21:24 -0500)]
Merge branch '12991-docker-memory-limit'
fixes #12991
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 12 Feb 2018 02:23:40 +0000 (21:23 -0500)]
Merge branch '13022-tmp-cleanup'
fixes #13022
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
projects / arvados.git / log