arvados.git
8 years ago6260: TestPutAndGetBlocks is working.
radhika [Thu, 3 Sep 2015 19:39:33 +0000 (15:39 -0400)]
6260: TestPutAndGetBlocks is working.

8 years ago6260: do not force never_delete in keepstore
radhika [Thu, 3 Sep 2015 15:26:12 +0000 (11:26 -0400)]
6260: do not force never_delete in keepstore

8 years ago7193: Run provision script after creating node, not in sync_node, because
Peter Amstutz [Thu, 3 Sep 2015 14:40:34 +0000 (10:40 -0400)]
7193: Run provision script after creating node, not in sync_node, because
sync_node doesn't get called until the node has pinged!

8 years agoarv-copy: Make the help text for the --src and --dst options more easily
Ward Vandewege [Thu, 3 Sep 2015 00:17:29 +0000 (20:17 -0400)]
arv-copy: Make the help text for the --src and --dst options more easily
intelligible.

No issue #

8 years ago7193: Add ex_run_command
Peter Amstutz [Wed, 2 Sep 2015 20:43:29 +0000 (16:43 -0400)]
7193: Add ex_run_command

8 years ago6260: test updates
radhika [Wed, 2 Sep 2015 16:40:56 +0000 (12:40 -0400)]
6260: test updates

8 years ago5824: Enable blob signing in integration tests, and send keepstore logs to files.
Tom Clegg [Wed, 29 Jul 2015 08:41:26 +0000 (04:41 -0400)]
5824: Enable blob signing in integration tests, and send keepstore logs to files.

For some reason, sending keepstore logs to stdout seems to make
keepstore crash silently when invoked from a Go integration test. Work
around this by logging to disk, like we do with API server.

8 years agoMerge branch 'master' into 6260-test-datamanager
radhika [Wed, 2 Sep 2015 15:51:14 +0000 (11:51 -0400)]
Merge branch 'master' into 6260-test-datamanager

8 years ago6260: Add TestGetStatusRepeatedly
radhika [Wed, 2 Sep 2015 15:31:03 +0000 (11:31 -0400)]
6260: Add TestGetStatusRepeatedly

8 years ago6263: Rearrange test suites to share code better.
Tom Clegg [Wed, 2 Sep 2015 14:17:09 +0000 (10:17 -0400)]
6263: Rearrange test suites to share code better.

8 years agoMerge branch '6638-python-backport-dependencies-wip'
Brett Smith [Wed, 2 Sep 2015 13:52:06 +0000 (09:52 -0400)]
Merge branch '6638-python-backport-dependencies-wip'

Closes #6638.

8 years ago6638: Remove C dependencies from our Python SDK.
Brett Smith [Wed, 26 Aug 2015 14:49:41 +0000 (10:49 -0400)]
6638: Remove C dependencies from our Python SDK.

Now that our backports properly declare their C dependencies, they're
no longer needed here.

8 years ago6638: Python backports declare all their C dependencies.
Brett Smith [Wed, 26 Aug 2015 14:49:14 +0000 (10:49 -0400)]
6638: Python backports declare all their C dependencies.

See #6638 for discussion about how these dependency lists were
generated.

8 years ago6263: Add gitolite integration test. Fix existing tests to use bare repos on server...
Tom Clegg [Wed, 2 Sep 2015 07:06:05 +0000 (03:06 -0400)]
6263: Add gitolite integration test. Fix existing tests to use bare repos on server side.

8 years ago6260: status check added; still not working completely since invoking datamanager...
radhika [Tue, 1 Sep 2015 21:21:15 +0000 (17:21 -0400)]
6260: status check added; still not working completely since invoking datamanager singlerun issues.

8 years agoMerge branch '6953-docker-image-cleaner' closes #6953
Tom Clegg [Tue, 1 Sep 2015 18:00:24 +0000 (14:00 -0400)]
Merge branch '6953-docker-image-cleaner' closes #6953

8 years agoMerge branch 'master' into 6260-test-datamanager
radhika [Tue, 1 Sep 2015 14:54:33 +0000 (10:54 -0400)]
Merge branch 'master' into 6260-test-datamanager

8 years agoFix import error for NodeAuthSSHKey refs #6507
Peter Amstutz [Tue, 1 Sep 2015 13:15:28 +0000 (09:15 -0400)]
Fix import error for NodeAuthSSHKey refs #6507

8 years ago6953: Add arvados-docker-cleaner instructions to compute node setup page.
Tom Clegg [Mon, 31 Aug 2015 18:51:51 +0000 (14:51 -0400)]
6953: Add arvados-docker-cleaner instructions to compute node setup page.

8 years agoMerge branch '6507-node-manager-azure' closes #6507
Peter Amstutz [Fri, 28 Aug 2015 15:38:37 +0000 (11:38 -0400)]
Merge branch '6507-node-manager-azure' closes #6507

8 years agoMerge branch 'master' into 6507-node-manager-azure
Peter Amstutz [Fri, 28 Aug 2015 14:44:32 +0000 (10:44 -0400)]
Merge branch 'master' into 6507-node-manager-azure

8 years agoMerge branch '6997-keepstore-mem' refs #6997
Tom Clegg [Thu, 27 Aug 2015 21:17:36 +0000 (17:17 -0400)]
Merge branch '6997-keepstore-mem' refs #6997

8 years ago6997: Fix fencepost error causing race condition in test.
Tom Clegg [Thu, 27 Aug 2015 21:14:28 +0000 (17:14 -0400)]
6997: Fix fencepost error causing race condition in test.

8 years ago6997: Add test case for (*UnixVolume)IndexTo().
Tom Clegg [Thu, 27 Aug 2015 21:10:25 +0000 (17:10 -0400)]
6997: Add test case for (*UnixVolume)IndexTo().

8 years agoDoc fix: protect against accidentally pulling in all versions of the
Ward Vandewege [Thu, 27 Aug 2015 20:03:11 +0000 (16:03 -0400)]
Doc fix: protect against accidentally pulling in all versions of the
arvados/jobs image in versions of Docker before 1.3.

Cf. https://github.com/docker/docker/commit/82b0c3e59ca12dd87bf2a9d88a63ff66e7d29fb4

closes #7150

8 years ago6997: Avoid unnecessarily inefficient dirent sorting (and a mismatch between index...
Tom Clegg [Mon, 24 Aug 2015 00:05:43 +0000 (20:05 -0400)]
6997: Avoid unnecessarily inefficient dirent sorting (and a mismatch between index and store/fetch logic) by doing a custom traversal.

8 years agoWrite "all interfaces, any port" as ":0" (not ":") for compatibility with Go 1.5...
Tom Clegg [Thu, 27 Aug 2015 20:03:24 +0000 (16:03 -0400)]
Write "all interfaces, any port" as ":0" (not ":") for compatibility with Go 1.5. refs #6997

8 years ago6507: Change version number for libcloud fork to 0.18.1.dev1 because local tags creat...
Peter Amstutz [Thu, 27 Aug 2015 18:23:06 +0000 (14:23 -0400)]
6507: Change version number for libcloud fork to 0.18.1.dev1 because local tags create too much trouble.

8 years agoMerge branch '6859-fix-invalid-manifests' refs #6859
Tom Clegg [Thu, 27 Aug 2015 15:32:08 +0000 (11:32 -0400)]
Merge branch '6859-fix-invalid-manifests' refs #6859

8 years ago6859: Find locator-like strings even if not space-delimited.
Tom Clegg [Thu, 27 Aug 2015 15:31:14 +0000 (11:31 -0400)]
6859: Find locator-like strings even if not space-delimited.

8 years ago6859: Fix up module usage, mock backtick to test arv-put error handling.
Tom Clegg [Thu, 27 Aug 2015 14:45:33 +0000 (10:45 -0400)]
6859: Fix up module usage, mock backtick to test arv-put error handling.

8 years agoMerge branch '6263-arv-gitolite' refs #6263
Tom Clegg [Thu, 27 Aug 2015 13:41:05 +0000 (09:41 -0400)]
Merge branch '6263-arv-gitolite' refs #6263

8 years ago6263: gofmt
Tom Clegg [Thu, 27 Aug 2015 01:44:57 +0000 (21:44 -0400)]
6263: gofmt

8 years ago6263: Update doc.go: mention gitolite-shell.
Tom Clegg [Thu, 27 Aug 2015 01:21:15 +0000 (21:21 -0400)]
6263: Update doc.go: mention gitolite-shell.

8 years ago6859: improve locator parsing to consider any terminating [[:xdigit:]]{32}; improve...
radhika [Thu, 27 Aug 2015 00:19:57 +0000 (20:19 -0400)]
6859: improve locator parsing to consider any terminating [[:xdigit:]]{32}; improve tests with more invalid locators.

8 years agoMerge branch 'master' into 6859-fix-invalid-manifests
radhika [Wed, 26 Aug 2015 22:06:17 +0000 (18:06 -0400)]
Merge branch 'master' into 6859-fix-invalid-manifests

8 years agoMerge branch 'master' into 6260-test-datamanager
radhika [Wed, 26 Aug 2015 22:05:39 +0000 (18:05 -0400)]
Merge branch 'master' into 6260-test-datamanager

8 years ago6260: backdate blocks
radhika [Wed, 26 Aug 2015 20:11:26 +0000 (16:11 -0400)]
6260: backdate blocks

8 years ago6507: Filter out "tag_" from create_kwargs.
Peter Amstutz [Wed, 26 Aug 2015 19:24:11 +0000 (15:24 -0400)]
6507: Filter out "tag_" from create_kwargs.

8 years ago6507: Use dependency_links to specify custom libcloud package needed for azure support.
Peter Amstutz [Wed, 26 Aug 2015 19:23:35 +0000 (15:23 -0400)]
6507: Use dependency_links to specify custom libcloud package needed for azure support.

8 years ago6781: Pass tests regardless of whether an admin group exists on the test host. refs...
Tom Clegg [Wed, 26 Aug 2015 19:01:27 +0000 (15:01 -0400)]
6781: Pass tests regardless of whether an admin group exists on the test host. refs #6871

8 years agoMerge branch '6781-arvados-login-sync' refs #6781
Tom Clegg [Wed, 26 Aug 2015 15:41:03 +0000 (11:41 -0400)]
Merge branch '6781-arvados-login-sync' refs #6781

8 years ago6781: Clarify "logins" vs. "get_all_logins" APIs by moving common code into render_lo...
Tom Clegg [Tue, 25 Aug 2015 19:10:57 +0000 (15:10 -0400)]
6781: Clarify "logins" vs. "get_all_logins" APIs by moving common code into render_logins_for.

8 years ago6781: Do not try /get_all_logins (the new /logins route is now 2 years old).
Tom Clegg [Tue, 25 Aug 2015 17:51:17 +0000 (13:51 -0400)]
6781: Do not try /get_all_logins (the new /logins route is now 2 years old).

8 years ago6781: Fix scope for user-sync script in documentation.
Ward Vandewege [Wed, 19 Aug 2015 21:04:02 +0000 (17:04 -0400)]
6781: Fix scope for user-sync script in documentation.

8 years ago6781: Add arvados-login-sync section to shell server install page.
Tom Clegg [Fri, 14 Aug 2015 21:37:26 +0000 (17:37 -0400)]
6781: Add arvados-login-sync section to shell server install page.

8 years ago6781: Add test cases and packaging support.
Tom Clegg [Fri, 14 Aug 2015 04:44:52 +0000 (00:44 -0400)]
6781: Add test cases and packaging support.

8 years ago6781: Use env vars instead of yaml config file.
Tom Clegg [Thu, 13 Aug 2015 15:56:21 +0000 (11:56 -0400)]
6781: Use env vars instead of yaml config file.

8 years ago6781: Add arvados-login-sync (was update-shell-accounts.rb)
Ward Vandewege [Thu, 13 Aug 2015 14:46:57 +0000 (10:46 -0400)]
6781: Add arvados-login-sync (was update-shell-accounts.rb)

8 years agoMerge branch '6940-workbench-centos-install-wip'
Brett Smith [Wed, 26 Aug 2015 01:29:10 +0000 (21:29 -0400)]
Merge branch '6940-workbench-centos-install-wip'

Closes #6940, #7053.

8 years ago6940: Workbench install guide describes using Nginx with Software Collections.
Brett Smith [Thu, 20 Aug 2015 16:59:56 +0000 (12:59 -0400)]
6940: Workbench install guide describes using Nginx with Software Collections.

Because Workbench invokes arv-get, it needs this configuration to find
arv-get in the Software Collection root.

8 years ago6940: Move arvados-workbench-upgrade.sh down in install guide.
Brett Smith [Thu, 20 Aug 2015 15:13:03 +0000 (11:13 -0400)]
6940: Move arvados-workbench-upgrade.sh down in install guide.

The script tries to restart Nginx, so Nginx should be set up first.
No issue #.

8 years ago6859: add test that creates and salvages a collection with invalid manifest text.
radhika [Tue, 25 Aug 2015 19:01:40 +0000 (15:01 -0400)]
6859: add test that creates and salvages a collection with invalid manifest text.

8 years agoMerge branch 'master' into 6859-fix-invalid-manifests
radhika [Tue, 25 Aug 2015 18:01:37 +0000 (14:01 -0400)]
Merge branch 'master' into 6859-fix-invalid-manifests

8 years ago6859: script does not catch expections during salvaging; instead they are propagated...
radhika [Tue, 25 Aug 2015 18:00:35 +0000 (14:00 -0400)]
6859: script does not catch expections during salvaging; instead they are propagated resulting in exit; update tests.

8 years agoFix up additional places in keepproxy install docs to use example
Peter Amstutz [Tue, 25 Aug 2015 17:07:41 +0000 (13:07 -0400)]
Fix up additional places in keepproxy install docs to use example
"keep$uuid_prefix.your.domain" consistently.  refs #6918

8 years ago6507: Remove unused imports, move _init_ssh_key() into base, set hostname tag on...
Peter Amstutz [Tue, 25 Aug 2015 17:02:55 +0000 (13:02 -0400)]
6507: Remove unused imports, move _init_ssh_key() into base, set hostname tag on sync_node(), tweak tests.

8 years agoMerge branch 'master' into 6859-fix-invalid-manifests
radhika [Tue, 25 Aug 2015 16:42:40 +0000 (12:42 -0400)]
Merge branch 'master' into 6859-fix-invalid-manifests

8 years agoMerge branch 'master' into 6260-test-datamanager
radhika [Tue, 25 Aug 2015 16:40:09 +0000 (12:40 -0400)]
Merge branch 'master' into 6260-test-datamanager

8 years ago6260: datamanager integration testing - WIP
radhika [Tue, 25 Aug 2015 16:39:09 +0000 (12:39 -0400)]
6260: datamanager integration testing - WIP

8 years ago6263: Split git-specific stuff into git_handler.go, add tests for new env vars.
Tom Clegg [Tue, 25 Aug 2015 16:33:44 +0000 (12:33 -0400)]
6263: Split git-specific stuff into git_handler.go, add tests for new env vars.

8 years agoMerge branch '6918-remove-nginx-cors-headers' closes #6918
Peter Amstutz [Tue, 25 Aug 2015 13:54:10 +0000 (09:54 -0400)]
Merge branch '6918-remove-nginx-cors-headers' closes #6918

8 years ago6918: Further clean up recommended nginx proxy configuration.
Peter Amstutz [Tue, 25 Aug 2015 13:51:40 +0000 (09:51 -0400)]
6918: Further clean up recommended nginx proxy configuration.

8 years ago6918: Fix server_name in example nginx config. Remove client_body_buffer_size.
Peter Amstutz [Mon, 24 Aug 2015 14:49:56 +0000 (10:49 -0400)]
6918: Fix server_name in example nginx config.  Remove client_body_buffer_size.

8 years agoMerge branch '6941-docs-fix-www-data' closes #6941
Peter Amstutz [Mon, 24 Aug 2015 14:03:56 +0000 (10:03 -0400)]
Merge branch '6941-docs-fix-www-data' closes #6941

8 years ago6941: Add note about needing to fill in correct web server user in places where
Peter Amstutz [Fri, 21 Aug 2015 20:33:14 +0000 (16:33 -0400)]
6941: Add note about needing to fill in correct web server user in places where
www-data was used before.

8 years agoarv-tag respects more valid ARVADOS_API_HOST_INSECURE values.
Brett Smith [Fri, 21 Aug 2015 19:51:37 +0000 (15:51 -0400)]
arv-tag respects more valid ARVADOS_API_HOST_INSECURE values.

This makes it more consistent with other tools, including `arv`
itself.  No issue #.

8 years agocloses #6640
Manoj [Fri, 21 Aug 2015 15:23:34 +0000 (11:23 -0400)]
closes #6640
Merge branch '6640-all-projects-dup'

8 years agoMerge branch 'master' into 6640-all-projects-dup
Manoj [Fri, 21 Aug 2015 14:57:08 +0000 (10:57 -0400)]
Merge branch 'master' into 6640-all-projects-dup

8 years agoMerge branch '6942-improve-compute-node-setup-script'
Ward Vandewege [Fri, 21 Aug 2015 14:09:13 +0000 (10:09 -0400)]
Merge branch '6942-improve-compute-node-setup-script'

closes #6942

8 years agoMerge branch 'master' into 6942-improve-compute-node-setup-script
Ward Vandewege [Fri, 21 Aug 2015 14:08:58 +0000 (10:08 -0400)]
Merge branch 'master' into 6942-improve-compute-node-setup-script

8 years agoSome more improvements based on review feedback.
Ward Vandewege [Fri, 21 Aug 2015 14:08:10 +0000 (10:08 -0400)]
Some more improvements based on review feedback.

closes #6942

8 years agoarv-tag authenticates to the API server with OAuth2.
Brett Smith [Fri, 21 Aug 2015 13:34:43 +0000 (09:34 -0400)]
arv-tag authenticates to the API server with OAuth2.

No issue #.

8 years agoMerge branch '7012-no-docker-install-doc' closes #7012
Peter Amstutz [Thu, 20 Aug 2015 20:07:27 +0000 (16:07 -0400)]
Merge branch '7012-no-docker-install-doc' closes #7012

8 years ago6918: Update documentation to remove CORS headers from sample nginx
Peter Amstutz [Thu, 20 Aug 2015 20:04:41 +0000 (16:04 -0400)]
6918: Update documentation to remove CORS headers from sample nginx
configuration.  Add sample ssl_, proxy_ and client_ settings as well.

8 years agocloses #7010
radhika [Thu, 20 Aug 2015 20:03:47 +0000 (16:03 -0400)]
closes #7010
Merge branch '7010-git-version'

8 years agoMerge branch 'master' into 7010-git-version
radhika [Thu, 20 Aug 2015 20:03:21 +0000 (16:03 -0400)]
Merge branch 'master' into 7010-git-version

8 years ago7010: trimmed version git version note.
radhika [Thu, 20 Aug 2015 18:44:53 +0000 (14:44 -0400)]
7010: trimmed version git version note.

8 years ago7012: Remove Docker install from _config.yml as well.
Peter Amstutz [Thu, 20 Aug 2015 18:36:51 +0000 (14:36 -0400)]
7012: Remove Docker install from _config.yml as well.

8 years ago7012: Rewrite introduction page to remove links to Docker install and clarify
Peter Amstutz [Thu, 20 Aug 2015 18:34:30 +0000 (14:34 -0400)]
7012: Rewrite introduction page to remove links to Docker install and clarify
description of the manual installation method.

8 years ago6507: Fix test
Peter Amstutz [Thu, 20 Aug 2015 18:05:37 +0000 (14:05 -0400)]
6507: Fix test

8 years ago6507: Use get_image() instead of list_images() for image lookup.
Peter Amstutz [Thu, 20 Aug 2015 18:04:03 +0000 (14:04 -0400)]
6507: Use get_image() instead of list_images() for image lookup.

8 years agoImprove compute node setup script.
Ward Vandewege [Thu, 20 Aug 2015 15:34:17 +0000 (11:34 -0400)]
Improve compute node setup script.

closes #6942

8 years ago7010: add note in install guides that we need git version 1.7.10 or later.
radhika [Thu, 20 Aug 2015 14:47:27 +0000 (10:47 -0400)]
7010: add note in install guides that we need git version 1.7.10 or later.

8 years ago6263: Set flag to skip gitolite permission checks, and set SERVER_ADDR so gitolite...
Tom Clegg [Thu, 20 Aug 2015 06:11:02 +0000 (02:11 -0400)]
6263: Set flag to skip gitolite permission checks, and set SERVER_ADDR so gitolite doesn't complain.

8 years ago6263: Pass through environment variables needed by gitolite-shell.
Tom Clegg [Thu, 20 Aug 2015 05:51:17 +0000 (01:51 -0400)]
6263: Pass through environment variables needed by gitolite-shell.

8 years ago6640: Fix whitespace, remove excess end tag.
Tom Clegg [Thu, 20 Aug 2015 03:59:07 +0000 (23:59 -0400)]
6640: Fix whitespace, remove excess end tag.

8 years ago6640: Replace paging test with all_projects bugfix test.
Tom Clegg [Thu, 20 Aug 2015 03:32:28 +0000 (23:32 -0400)]
6640: Replace paging test with all_projects bugfix test.

8 years ago6859: Always raise an exception on errors during salvaging. Catch any such exceptions...
radhika [Wed, 19 Aug 2015 23:18:19 +0000 (19:18 -0400)]
6859: Always raise an exception on errors during salvaging. Catch any such exceptions in the script and exit. Update test accordingly.

8 years ago6640: dup all_projects when reusing it for find_objects_for_index, to
Tom Clegg [Wed, 19 Aug 2015 21:34:20 +0000 (17:34 -0400)]
6640: dup all_projects when reusing it for find_objects_for_index, to
avoid infecting the projects dropdown menu with this request's filter
params.

8 years agoMerge branch 'master' into 6859-fix-invalid-manifests
radhika [Wed, 19 Aug 2015 18:22:13 +0000 (14:22 -0400)]
Merge branch 'master' into 6859-fix-invalid-manifests

8 years agorefs #6640
Manoj [Wed, 19 Aug 2015 16:39:50 +0000 (12:39 -0400)]
refs #6640
Merge branch '6640-projects-menu'

8 years ago6640: Show only My Projects in dropdowns: use search modal for shared projects.
Manoj [Wed, 19 Aug 2015 15:52:03 +0000 (11:52 -0400)]
6640: Show only My Projects in dropdowns: use search modal for shared projects.

8 years ago6507: Fix tests
Peter Amstutz [Wed, 19 Aug 2015 15:22:35 +0000 (11:22 -0400)]
6507: Fix tests

8 years ago6507: Set hostname tag in arvados_create_kwargs instead of sync_node.
Peter Amstutz [Wed, 19 Aug 2015 15:19:45 +0000 (11:19 -0400)]
6507: Set hostname tag in arvados_create_kwargs instead of sync_node.

8 years ago6507: Paste in command line for creating service principals instead of just
Peter Amstutz [Wed, 19 Aug 2015 15:13:34 +0000 (11:13 -0400)]
6507: Paste in command line for creating service principals instead of just
referencing generic documentation.

8 years ago6507: Added notes to sample azure configuration file
Peter Amstutz [Wed, 19 Aug 2015 15:07:53 +0000 (11:07 -0400)]
6507: Added notes to sample azure configuration file

8 years ago6507: Add basic azure driver tests.
Peter Amstutz [Wed, 19 Aug 2015 14:36:42 +0000 (10:36 -0400)]
6507: Add basic azure driver tests.

8 years agocloses #6862
Bryan Cosca [Wed, 19 Aug 2015 13:35:41 +0000 (09:35 -0400)]
closes #6862
Merge branch '6862-git-doc-guide-new'

8 years agocloses #6652
Manoj [Wed, 19 Aug 2015 13:24:23 +0000 (09:24 -0400)]
closes #6652
Merge branch '6652-test-system-menu'