arvados.git
4 years agoFix up test gold standard references for new output
Tom Morris [Tue, 9 Jul 2019 18:04:41 +0000 (14:04 -0400)]
Fix up test gold standard references for new output

refs #13913

Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

4 years agoAdd a simple temp disk utilization based recommendation.
Tom Morris [Wed, 3 Jul 2019 17:52:34 +0000 (13:52 -0400)]
Add a simple temp disk utilization based recommendation.

refs #13913

Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

4 years agoGraph temp disk usage
Tom Morris [Tue, 23 Apr 2019 00:48:53 +0000 (20:48 -0400)]
Graph temp disk usage

Plots temp disk space used as well as total available.

Also adds support for multiple metrics per graph and
groups CPU and network stats by category.

refs #13913

Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>

4 years agoArvbox won't create application.yml if arvados_config.rb exists.
Peter Amstutz [Mon, 8 Jul 2019 20:40:42 +0000 (16:40 -0400)]
Arvbox won't create application.yml if arvados_config.rb exists.

refs #14812

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '14812-wb1-new-config' refs #14812
Peter Amstutz [Tue, 9 Jul 2019 14:00:13 +0000 (10:00 -0400)]
Merge branch '14812-wb1-new-config' refs #14812

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Documentation fixes
Peter Amstutz [Tue, 9 Jul 2019 13:59:02 +0000 (09:59 -0400)]
14812: Documentation fixes

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Add note about config migration to upgrading notes
Peter Amstutz [Mon, 8 Jul 2019 20:07:23 +0000 (16:07 -0400)]
14812: Add note about config migration to upgrading notes

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Update API install documentation for new config as well.
Peter Amstutz [Mon, 8 Jul 2019 19:56:48 +0000 (15:56 -0400)]
14812: Update API install documentation for new config as well.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Add documentation about migrating Workbench config.
Peter Amstutz [Mon, 8 Jul 2019 19:04:52 +0000 (15:04 -0400)]
14812: Add documentation about migrating Workbench config.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago"arvbox clone" doesn't clone data, just dependencies. no issue #
Peter Amstutz [Mon, 8 Jul 2019 18:04:49 +0000 (14:04 -0400)]
"arvbox clone" doesn't clone data, just dependencies.  no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Delete legacy load_config.rb
Peter Amstutz [Mon, 8 Jul 2019 17:34:39 +0000 (13:34 -0400)]
14812: Delete legacy load_config.rb

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '15358-fetch-text-encoding' closes #15358
Peter Amstutz [Mon, 8 Jul 2019 15:24:19 +0000 (11:24 -0400)]
Merge branch '15358-fetch-text-encoding' closes #15358

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Remove obsolete defaults from development section
Peter Amstutz [Mon, 8 Jul 2019 15:20:36 +0000 (11:20 -0400)]
14812: Remove obsolete defaults from development section

Fix tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Improve error reporting
Peter Amstutz [Mon, 8 Jul 2019 15:06:05 +0000 (11:06 -0400)]
14812: Improve error reporting

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Sync config defaults (off by one line)
Peter Amstutz [Wed, 3 Jul 2019 20:35:08 +0000 (16:35 -0400)]
14812: Sync config defaults (off by one line)

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: We can't log the error, might as well make it fatal.
Peter Amstutz [Wed, 3 Jul 2019 20:18:11 +0000 (16:18 -0400)]
14812: We can't log the error, might as well make it fatal.

Rails.logger isn't initialized at this point.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Fix a couple more tests
Peter Amstutz [Wed, 3 Jul 2019 19:02:55 +0000 (15:02 -0400)]
14812: Fix a couple more tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '15026-cloudtest'
Tom Clegg [Wed, 3 Jul 2019 18:26:15 +0000 (14:26 -0400)]
Merge branch '15026-cloudtest'

closes #15026

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15026: Fix infinite loop in -destroy-existing.
Tom Clegg [Wed, 3 Jul 2019 18:24:49 +0000 (14:24 -0400)]
15026: Fix infinite loop in -destroy-existing.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15026: Avoid special chars in default instanceSetID.
Tom Clegg [Wed, 3 Jul 2019 18:23:59 +0000 (14:23 -0400)]
15026: Avoid special chars in default instanceSetID.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoUnify string quotation on python example scripts on doc site.
Lucas Di Pentima [Wed, 3 Jul 2019 18:14:08 +0000 (15:14 -0300)]
Unify string quotation on python example scripts on doc site.
No issue #

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago15358: Add encoding option to CollectionFsAccess.open() and use in fetch_text()
Peter Amstutz [Wed, 3 Jul 2019 18:03:33 +0000 (14:03 -0400)]
15358: Add encoding option to CollectionFsAccess.open() and use in fetch_text()

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Tweak config export
Peter Amstutz [Wed, 3 Jul 2019 16:56:58 +0000 (12:56 -0400)]
14812: Tweak config export

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Fix email defaults
Peter Amstutz [Wed, 3 Jul 2019 16:50:52 +0000 (12:50 -0400)]
14812: Fix email defaults

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Move TrustAllContent to Collections
Peter Amstutz [Wed, 3 Jul 2019 14:58:54 +0000 (10:58 -0400)]
14812: Move TrustAllContent to Collections

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Remove commented debug line
Peter Amstutz [Wed, 3 Jul 2019 13:29:44 +0000 (09:29 -0400)]
14812: Remove commented debug line

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Migrate previously missed config items
Peter Amstutz [Wed, 3 Jul 2019 13:20:43 +0000 (09:20 -0400)]
14812: Migrate previously missed config items

Remove defaults from application.defaults.yml that now come from
arvados-server

Migrate comments describing configuration items

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Fix lib/config tests
Peter Amstutz [Tue, 2 Jul 2019 17:42:17 +0000 (13:42 -0400)]
14812: Fix lib/config tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoTweak arvbox build order, API server depends on arvados-server
Peter Amstutz [Mon, 1 Jul 2019 21:50:31 +0000 (17:50 -0400)]
Tweak arvbox build order, API server depends on arvados-server

refs #14812

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Tweak install order because API server depends on arvados-server
Peter Amstutz [Mon, 1 Jul 2019 21:49:23 +0000 (17:49 -0400)]
14812: Tweak install order because API server depends on arvados-server

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Migrate UserProfileFormFields
Peter Amstutz [Mon, 1 Jul 2019 20:35:29 +0000 (16:35 -0400)]
14812: Migrate UserProfileFormFields

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Get defaults and config from arvados-server
Peter Amstutz [Mon, 1 Jul 2019 18:12:44 +0000 (14:12 -0400)]
14812: Get defaults and config from arvados-server

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Fixing up integration tests
Peter Amstutz [Fri, 28 Jun 2019 21:24:01 +0000 (17:24 -0400)]
14812: Fixing up integration tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Passing unit and functional tests
Peter Amstutz [Fri, 28 Jun 2019 16:33:41 +0000 (12:33 -0400)]
14812: Passing unit and functional tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Fix test
Peter Amstutz [Thu, 27 Jun 2019 20:39:25 +0000 (16:39 -0400)]
14812: Fix test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: First pass migrating tests.
Peter Amstutz [Thu, 27 Jun 2019 20:35:28 +0000 (16:35 -0400)]
14812: First pass migrating tests.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Finish first pass migrating config items
Peter Amstutz [Thu, 27 Jun 2019 19:18:39 +0000 (15:18 -0400)]
14812: Finish first pass migrating config items

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Config migration WIP
Peter Amstutz [Thu, 27 Jun 2019 17:41:13 +0000 (13:41 -0400)]
14812: Config migration WIP

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch 'wb-test-runner-fixes'
Lucas Di Pentima [Mon, 1 Jul 2019 16:06:12 +0000 (13:06 -0300)]
Merge branch 'wb-test-runner-fixes'
No issue #

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoMerge branch '15026-cloudtest'
Tom Clegg [Mon, 1 Jul 2019 14:56:41 +0000 (10:56 -0400)]
Merge branch '15026-cloudtest'

refs #15026

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15026: Clean up confusing variable name.
Tom Clegg [Mon, 1 Jul 2019 14:55:26 +0000 (10:55 -0400)]
15026: Clean up confusing variable name.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoFix arvados-health using controller listener config.
Tom Clegg [Fri, 28 Jun 2019 18:08:22 +0000 (14:08 -0400)]
Fix arvados-health using controller listener config.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoFixes test runner execution so that it can run individual tests on rails 5
Lucas Di Pentima [Fri, 28 Jun 2019 15:40:48 +0000 (12:40 -0300)]
Fixes test runner execution so that it can run individual tests on rails 5

No issue #

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoMerge branch '15209-python-arv-deps-pinned'
Lucas Di Pentima [Thu, 27 Jun 2019 18:59:53 +0000 (15:59 -0300)]
Merge branch '15209-python-arv-deps-pinned'
Closes #15209

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago15209: Fixes pysdk dependency strings on pam, fuse & nodemanager.
Lucas Di Pentima [Thu, 27 Jun 2019 18:14:10 +0000 (15:14 -0300)]
15209: Fixes pysdk dependency strings on pam, fuse & nodemanager.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoMerge branch '14287-controller-structure'
Tom Clegg [Thu, 27 Jun 2019 17:34:08 +0000 (13:34 -0400)]
Merge branch '14287-controller-structure'

refs #14287

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch 'master' into 15209-python-arv-deps-pinned
Lucas Di Pentima [Thu, 27 Jun 2019 17:28:46 +0000 (14:28 -0300)]
Merge branch 'master' into 15209-python-arv-deps-pinned

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago15026: Add missing notextile tags.
Tom Clegg [Thu, 27 Jun 2019 14:58:46 +0000 (10:58 -0400)]
15026: Add missing notextile tags.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15209: Makes python components packages ask for current PySDK version.
Lucas Di Pentima [Thu, 27 Jun 2019 14:54:21 +0000 (11:54 -0300)]
15209: Makes python components packages ask for current PySDK version.

This make arvados-cwl-runner, arvados-nodemanager, arvados-fuse and arvados-pam
to ask for the current arvados-python-client version when building packages.
Ask pip to look for packages on the PySDK sdist directory, so that current and
not yet uploaded versions can be asked as dependency.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14287: Merge branch 'master'
Tom Clegg [Thu, 27 Jun 2019 14:50:58 +0000 (10:50 -0400)]
14287: Merge branch 'master'

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15026: Add cloudtest page to admin docs.
Tom Clegg [Wed, 26 Jun 2019 20:17:02 +0000 (16:17 -0400)]
15026: Add cloudtest page to admin docs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15026: Log duration of each list/create/destroy/exec operation.
Tom Clegg [Wed, 26 Jun 2019 19:19:08 +0000 (15:19 -0400)]
15026: Log duration of each list/create/destroy/exec operation.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '15026-cloudtest'
Tom Clegg [Wed, 26 Jun 2019 18:55:31 +0000 (14:55 -0400)]
Merge branch '15026-cloudtest'

refs #15026

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Don't delete non-writable attrs in create/update reqs.
Tom Clegg [Wed, 26 Jun 2019 17:40:36 +0000 (13:40 -0400)]
14287: Don't delete non-writable attrs in create/update reqs.

This is already handled by clients and/or RailsAPI anyway.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15026: Treat bad-tags and boot-timeout as deferred errors.
Tom Clegg [Tue, 25 Jun 2019 20:24:28 +0000 (16:24 -0400)]
15026: Treat bad-tags and boot-timeout as deferred errors.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15026: Remove redundant TagVerifier use.
Tom Clegg [Tue, 25 Jun 2019 20:23:08 +0000 (16:23 -0400)]
15026: Remove redundant TagVerifier use.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '15396-trgm-docs'
Eric Biagiotti [Tue, 25 Jun 2019 18:44:31 +0000 (14:44 -0400)]
Merge branch '15396-trgm-docs'

Refs #15396

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years agoMerge branch '14874-post-merge-fixes'
Lucas Di Pentima [Tue, 25 Jun 2019 18:30:41 +0000 (15:30 -0300)]
Merge branch '14874-post-merge-fixes'
Refs #14874

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14287: Support federated requests for /used_by and /provenance.
Tom Clegg [Tue, 25 Jun 2019 18:10:19 +0000 (14:10 -0400)]
14287: Support federated requests for /used_by and /provenance.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14874: Fixed missing config sync.
Lucas Di Pentima [Tue, 25 Jun 2019 17:46:50 +0000 (14:46 -0300)]
14874: Fixed missing config sync.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14874: Capitalizes managed properties keys, updates documentation.
Lucas Di Pentima [Tue, 25 Jun 2019 17:08:01 +0000 (14:08 -0300)]
14874: Capitalizes managed properties keys, updates documentation.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14874: Adds Collections.ManagedProperties to Go SDK.
Lucas Di Pentima [Tue, 25 Jun 2019 16:20:24 +0000 (13:20 -0300)]
14874: Adds Collections.ManagedProperties to Go SDK.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago15396: Improves trgm update and installation docs
Eric Biagiotti [Tue, 25 Jun 2019 15:42:44 +0000 (11:42 -0400)]
15396: Improves trgm update and installation docs

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago14287: Clean up context key usage.
Tom Clegg [Tue, 25 Jun 2019 15:39:41 +0000 (11:39 -0400)]
14287: Clean up context key usage.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch '14874-protected-collection-properties'
Lucas Di Pentima [Tue, 25 Jun 2019 14:29:13 +0000 (11:29 -0300)]
Merge branch '14874-protected-collection-properties'
Closes #14874

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoMerge branch '15345-kill-container-api'
Tom Clegg [Mon, 24 Jun 2019 22:55:55 +0000 (18:55 -0400)]
Merge branch '15345-kill-container-api'

closes #15345

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15345: Merge branch 'master' into 15345-kill-container-api
Tom Clegg [Mon, 24 Jun 2019 15:25:49 +0000 (11:25 -0400)]
15345: Merge branch 'master' into 15345-kill-container-api

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Extract inline func.
Tom Clegg [Mon, 24 Jun 2019 15:21:30 +0000 (11:21 -0400)]
14287: Extract inline func.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Specify response Content-Type.
Tom Clegg [Mon, 24 Jun 2019 15:20:55 +0000 (11:20 -0400)]
14287: Specify response Content-Type.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Add comments to request param parsing.
Tom Clegg [Mon, 24 Jun 2019 15:20:25 +0000 (11:20 -0400)]
14287: Add comments to request param parsing.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoMerge branch 'master' into 14874-protected-collection-properties
Lucas Di Pentima [Mon, 24 Jun 2019 13:22:52 +0000 (10:22 -0300)]
Merge branch 'master' into 14874-protected-collection-properties

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14287: Comment and rename checker.go.
Tom Clegg [Mon, 24 Jun 2019 13:21:08 +0000 (09:21 -0400)]
14287: Comment and rename checker.go.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14874: Simplifies example scripts and expands documentation.
Lucas Di Pentima [Fri, 21 Jun 2019 22:14:51 +0000 (19:14 -0300)]
14874: Simplifies example scripts and expands documentation.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoMerge branch '15340-error-counters'
Tom Clegg [Fri, 21 Jun 2019 20:37:46 +0000 (16:37 -0400)]
Merge branch '15340-error-counters'

refs #15340

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15340: Fix uncounted Destroy ops.
Tom Clegg [Fri, 21 Jun 2019 20:12:56 +0000 (16:12 -0400)]
15340: Fix uncounted Destroy ops.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15026: Add comments.
Tom Clegg [Fri, 21 Jun 2019 20:01:38 +0000 (16:01 -0400)]
15026: Add comments.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15026: Add cloudtest command.
Tom Clegg [Fri, 21 Jun 2019 18:09:20 +0000 (14:09 -0400)]
15026: Add cloudtest command.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14874: Adds admin script examples on documentation.
Lucas Di Pentima [Fri, 21 Jun 2019 15:34:39 +0000 (12:34 -0300)]
14874: Adds admin script examples on documentation.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago14874: Renames DefaultProperties to ManagedProperties. Fixes documentation.
Lucas Di Pentima [Wed, 19 Jun 2019 20:28:44 +0000 (17:28 -0300)]
14874: Renames DefaultProperties to ManagedProperties. Fixes documentation.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoKeep relative URL when switching between versions in our documentation.
Ward Vandewege [Wed, 19 Jun 2019 19:02:10 +0000 (15:02 -0400)]
Keep relative URL when switching between versions in our documentation.

refs #15138

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

4 years agoMerge branch '15296-cwl-cancel-procs' closes #15296
Peter Amstutz [Wed, 19 Jun 2019 18:07:35 +0000 (14:07 -0400)]
Merge branch '15296-cwl-cancel-procs' closes #15296

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '15295-keep-ref-check' closes #15295
Peter Amstutz [Wed, 19 Jun 2019 16:59:36 +0000 (12:59 -0400)]
Merge branch '15295-keep-ref-check' closes #15295

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoTidy up error checks in govendor test.
Tom Clegg [Tue, 18 Jun 2019 20:37:46 +0000 (16:37 -0400)]
Tidy up error checks in govendor test.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoCheck for up-to-date govendor as a test rather than a setup task.
Tom Clegg [Tue, 18 Jun 2019 20:03:37 +0000 (16:03 -0400)]
Check for up-to-date govendor as a test rather than a setup task.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15345: Add .../containers/kill management API to dispatcher.
Tom Clegg [Tue, 18 Jun 2019 19:25:20 +0000 (15:25 -0400)]
15345: Add .../containers/kill management API to dispatcher.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15296: Shutdown cancels processes unless running inside a container
Peter Amstutz [Tue, 18 Jun 2019 17:28:40 +0000 (13:28 -0400)]
15296: Shutdown cancels processes unless running inside a container

Suppress errors in cancel request (such as a double-cancel race).

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14287: Unit-test router with stubbed API.
Tom Clegg [Tue, 18 Jun 2019 14:52:45 +0000 (10:52 -0400)]
14287: Unit-test router with stubbed API.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14874: Adds protected properties error handling to wb's tag editor.
Lucas Di Pentima [Tue, 18 Jun 2019 14:29:10 +0000 (11:29 -0300)]
14874: Adds protected properties error handling to wb's tag editor.

The tag editor notifies the user which tags are protected and restores their
state in the editor so they can be saved.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoMerge branch '15106-trgm-text-search'
Eric Biagiotti [Tue, 18 Jun 2019 14:06:43 +0000 (10:06 -0400)]
Merge branch '15106-trgm-text-search'

refs #15106

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago15295: Fix test
Peter Amstutz [Mon, 17 Jun 2019 21:08:50 +0000 (17:08 -0400)]
15295: Fix test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15295: Make "lock by different token" a PermissionDeniedError
Peter Amstutz [Mon, 17 Jun 2019 19:56:16 +0000 (15:56 -0400)]
15295: Make "lock by different token" a PermissionDeniedError

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15295: Check that keep references are well formed
Peter Amstutz [Mon, 17 Jun 2019 19:08:53 +0000 (15:08 -0400)]
15295: Check that keep references are well formed

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15106: Adds trigram support for "like" queries
Eric Biagiotti [Mon, 17 Jun 2019 18:58:17 +0000 (14:58 -0400)]
15106: Adds trigram support for "like" queries

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago15295: Fix updating and checking lock_count when updating state
Peter Amstutz [Mon, 17 Jun 2019 18:28:53 +0000 (14:28 -0400)]
15295: Fix updating and checking lock_count when updating state

Previously lock_count was only updated on explicit lock or unlock
calls.  Now updates to state will correctly update or check
lock_count.

Also tweak row locking for containers, remove redudant reload, also
make sure lock and unlock take a lock.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '15087-wb-queued-containers' closes #15087
Peter Amstutz [Mon, 17 Jun 2019 15:20:15 +0000 (11:20 -0400)]
Merge branch '15087-wb-queued-containers' closes #15087

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15106: Fixes arvbox to update an existing arvados user to superuser
Eric Biagiotti [Mon, 17 Jun 2019 15:19:57 +0000 (11:19 -0400)]
15106: Fixes arvbox to update an existing arvados user to superuser

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago"arvbox run test" is --interactive if not run with any other arguments.
Peter Amstutz [Mon, 17 Jun 2019 14:53:56 +0000 (10:53 -0400)]
"arvbox run test" is --interactive if not run with any other arguments.

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14287: Update test to new config struct.
Tom Clegg [Fri, 14 Jun 2019 18:45:45 +0000 (14:45 -0400)]
14287: Update test to new config struct.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Add EnableBetaController14287 to config whitelist map.
Tom Clegg [Thu, 13 Jun 2019 21:00:34 +0000 (17:00 -0400)]
14287: Add EnableBetaController14287 to config whitelist map.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Move federation.Interface to arvados.API.
Tom Clegg [Thu, 13 Jun 2019 20:58:43 +0000 (16:58 -0400)]
14287: Move federation.Interface to arvados.API.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>