arvados.git
3 years agoMerge branch '17498-python3-migration-metapackages'
Ward Vandewege [Tue, 13 Apr 2021 15:53:10 +0000 (11:53 -0400)]
Merge branch '17498-python3-migration-metapackages'

closes #17498

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17498: address review comments.
Ward Vandewege [Tue, 13 Apr 2021 15:51:39 +0000 (11:51 -0400)]
17498: address review comments.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17498: Build metapackages to ease the migration from python 2 to
Ward Vandewege [Tue, 13 Apr 2021 14:57:25 +0000 (10:57 -0400)]
17498: Build metapackages to ease the migration from python 2 to
       python3.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17498: add a note about the python 3 package names in the upgrade guide.
Ward Vandewege [Tue, 13 Apr 2021 14:55:24 +0000 (10:55 -0400)]
17498: add a note about the python 3 package names in the upgrade guide.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago16159: Merge branch 'master' into 16159-token-expiration-on-logout
Lucas Di Pentima [Tue, 13 Apr 2021 14:39:01 +0000 (11:39 -0300)]
16159: Merge branch 'master' into 16159-token-expiration-on-logout

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

3 years ago16159: Adds tests checking token expiration at logout.
Lucas Di Pentima [Tue, 13 Apr 2021 14:29:42 +0000 (11:29 -0300)]
16159: Adds tests checking token expiration at logout.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

3 years agoMerge branch '17392-go-write-to-storage-class'
Tom Clegg [Mon, 12 Apr 2021 18:59:13 +0000 (14:59 -0400)]
Merge branch '17392-go-write-to-storage-class'

closes #17392

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17392: Test satisfying storage classes via multiple servers.
Tom Clegg [Mon, 12 Apr 2021 14:52:22 +0000 (10:52 -0400)]
17392: Test satisfying storage classes via multiple servers.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago16159: Provide a localdb transaction for federation tests.
Tom Clegg [Fri, 9 Apr 2021 17:18:55 +0000 (13:18 -0400)]
16159: Provide a localdb transaction for federation tests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17462: Fix fetch_text() signature
Peter Amstutz [Wed, 7 Apr 2021 20:51:46 +0000 (16:51 -0400)]
17462: Fix fetch_text() signature

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago17462: Bump cwltool for scandeps bugfix
Peter Amstutz [Wed, 7 Apr 2021 20:14:10 +0000 (16:14 -0400)]
17462: Bump cwltool for scandeps bugfix

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years ago16159: Expires tokens on logout on different login controllers.
Lucas Di Pentima [Tue, 6 Apr 2021 20:46:00 +0000 (17:46 -0300)]
16159: Expires tokens on logout on different login controllers.

Also, optimizes the DB query a bit.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

3 years ago17392: Ensure requested storage classes are satisfied on write.
Tom Clegg [Tue, 6 Apr 2021 15:28:14 +0000 (11:28 -0400)]
17392: Ensure requested storage classes are satisfied on write.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years agoMerge branch '13382-write-to-storage-class'
Tom Clegg [Tue, 6 Apr 2021 14:25:26 +0000 (10:25 -0400)]
Merge branch '13382-write-to-storage-class'

closes #13382

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago16159: Pass token to expire to controller on logout.
Lucas Di Pentima [Mon, 5 Apr 2021 21:35:08 +0000 (18:35 -0300)]
16159: Pass token to expire to controller on logout.

Also, adds a warning on the "current token" page about token's transciency.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

3 years ago13382: Rename putResult -> putProgress.
Tom Clegg [Mon, 5 Apr 2021 18:02:40 +0000 (14:02 -0400)]
13382: Rename putResult -> putProgress.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years agoFix golint warning.
Ward Vandewege [Fri, 2 Apr 2021 23:36:37 +0000 (19:36 -0400)]
Fix golint warning.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago16159: Adds error logging on token expiration failure. Fixes SQL query.
Lucas Di Pentima [Fri, 2 Apr 2021 14:44:14 +0000 (11:44 -0300)]
16159: Adds error logging on token expiration failure. Fixes SQL query.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

3 years agoSimplify code a bit.
Ward Vandewege [Fri, 2 Apr 2021 01:09:41 +0000 (21:09 -0400)]
Simplify code a bit.

refs #17503

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago13382: Test storage class failure cases.
Tom Clegg [Thu, 1 Apr 2021 14:59:30 +0000 (10:59 -0400)]
13382: Test storage class failure cases.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago13382: Use caller-specified storage classes when writing.
Tom Clegg [Wed, 31 Mar 2021 20:56:14 +0000 (16:56 -0400)]
13382: Use caller-specified storage classes when writing.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago13382: Report storage class(es) in headers after successful write.
Tom Clegg [Thu, 25 Mar 2021 14:57:52 +0000 (10:57 -0400)]
13382: Report storage class(es) in headers after successful write.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years agoMerge branch '17508-arvkeepdocker-fix'
Lucas Di Pentima [Thu, 1 Apr 2021 14:32:54 +0000 (11:32 -0300)]
Merge branch '17508-arvkeepdocker-fix'
Closes #17508

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

3 years ago17508: Fixes unit test.
Lucas Di Pentima [Thu, 1 Apr 2021 14:05:20 +0000 (11:05 -0300)]
17508: Fixes unit test.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

3 years ago17508: Fixes arv-keepdocker bug.
Lucas Di Pentima [Wed, 31 Mar 2021 20:32:03 +0000 (17:32 -0300)]
17508: Fixes arv-keepdocker bug.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

3 years ago17508: Exposes bug with a test.
Lucas Di Pentima [Wed, 31 Mar 2021 22:05:51 +0000 (19:05 -0300)]
17508: Exposes bug with a test.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

3 years agoFix deduplication report test.
Ward Vandewege [Wed, 31 Mar 2021 19:34:14 +0000 (15:34 -0400)]
Fix deduplication report test.

refs #17503

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoAdd test cases for special chars in filename.
Tom Clegg [Wed, 31 Mar 2021 15:45:16 +0000 (11:45 -0400)]
Add test cases for special chars in filename.

closes #17422

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years agoMerge branch '17503-fix-deduplication-report-paper-cuts'
Ward Vandewege [Wed, 31 Mar 2021 14:52:01 +0000 (10:52 -0400)]
Merge branch '17503-fix-deduplication-report-paper-cuts'

closes #17503

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17503: Merge branch 'master' into 17503-fix-deduplication-report-paper-cuts
Ward Vandewege [Wed, 31 Mar 2021 14:49:27 +0000 (10:49 -0400)]
17503: Merge branch 'master' into 17503-fix-deduplication-report-paper-cuts

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17503: implement review feedback.
Ward Vandewege [Wed, 31 Mar 2021 12:10:06 +0000 (08:10 -0400)]
17503: implement review feedback.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago16159: Validates token uuid & secret before expiring.
Lucas Di Pentima [Tue, 30 Mar 2021 22:57:04 +0000 (19:57 -0300)]
16159: Validates token uuid & secret before expiring.

Don't error out when no token is provided, to support old clients.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

3 years agoMerge branch '17119-add-filter-groups'
Ward Vandewege [Tue, 30 Mar 2021 20:41:49 +0000 (16:41 -0400)]
Merge branch '17119-add-filter-groups'

refs #17119

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17119: Merge branch 'master' into 17119-add-filter-groups
Ward Vandewege [Tue, 30 Mar 2021 20:40:52 +0000 (16:40 -0400)]
17119: Merge branch 'master' into 17119-add-filter-groups

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17119: one more change after review feedback.
Ward Vandewege [Tue, 30 Mar 2021 20:35:43 +0000 (16:35 -0400)]
17119: one more change after review feedback.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17119: more changes after review feedback.
Ward Vandewege [Tue, 30 Mar 2021 16:35:12 +0000 (12:35 -0400)]
17119: more changes after review feedback.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17503: the deduplication report tool should not require the Arvados
Ward Vandewege [Mon, 29 Mar 2021 20:51:43 +0000 (16:51 -0400)]
17503: the deduplication report tool should not require the Arvados
       config file. Also, when cli help is requested, it should abort
       with exit code 0.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoAdd a comment at the top of the documentation Rakefile about generating
Ward Vandewege [Mon, 29 Mar 2021 20:32:53 +0000 (16:32 -0400)]
Add a comment at the top of the documentation Rakefile about generating
the docs locally.

refs #17245

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago16159: Attempts to expire the user's token getting it from the context. (WIP)
Lucas Di Pentima [Mon, 29 Mar 2021 19:12:05 +0000 (16:12 -0300)]
16159: Attempts to expire the user's token getting it from the context. (WIP)

To avoid making a request to railsAPI, the user's token is retrieved from the
context.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

3 years ago16159: Makes test login form to autofocus on username field.
Lucas Di Pentima [Mon, 29 Mar 2021 19:11:33 +0000 (16:11 -0300)]
16159: Makes test login form to autofocus on username field.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

3 years agoFix golint warning (incorrect function name in comment).
Ward Vandewege [Sun, 28 Mar 2021 23:40:00 +0000 (19:40 -0400)]
Fix golint warning (incorrect function name in comment).

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoFix golint warning.
Ward Vandewege [Sun, 28 Mar 2021 01:42:27 +0000 (21:42 -0400)]
Fix golint warning.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoDue to the mimemagic gem changes, shared-mime-info is now a build
Ward Vandewege [Fri, 26 Mar 2021 20:13:37 +0000 (16:13 -0400)]
Due to the mimemagic gem changes, shared-mime-info is now a build
dependency; only on ubuntu 20.04 is it not a dependency that is already
pulled in by another package.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoFix centos7 api server package test.
Ward Vandewege [Fri, 26 Mar 2021 15:25:01 +0000 (11:25 -0400)]
Fix centos7 api server package test.

closes #17491

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoMerge branch 'master' into 16159-token-expiration-on-logout
Lucas Di Pentima [Fri, 26 Mar 2021 14:12:55 +0000 (11:12 -0300)]
Merge branch 'master' into 16159-token-expiration-on-logout

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

3 years agoThe latest version of the mimemagic gem has a new dependency on the
Ward Vandewege [Fri, 26 Mar 2021 13:45:03 +0000 (09:45 -0400)]
The latest version of the mimemagic gem has a new dependency on the
shared-mime-info system package.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago16159: Expires token after logout (WIP)
Lucas Di Pentima [Fri, 26 Mar 2021 00:39:40 +0000 (21:39 -0300)]
16159: Expires token after logout (WIP)

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

3 years agoUpdate mimemagic gem version to 0.3.8, the previous version (0.3.6) was
Ward Vandewege [Thu, 25 Mar 2021 20:23:21 +0000 (16:23 -0400)]
Update mimemagic gem version to 0.3.8, the previous version (0.3.6) was
pulled from rubygems, again

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoUpdate mimemagic gem version to 0.3.8, the previous version (0.3.6) was
Ward Vandewege [Thu, 25 Mar 2021 20:23:21 +0000 (16:23 -0400)]
Update mimemagic gem version to 0.3.8, the previous version (0.3.6) was
pulled from rubygems, again

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17119: bugfix: the group/contents endpoint should do the right thing
Ward Vandewege [Thu, 25 Mar 2021 19:47:35 +0000 (15:47 -0400)]
17119: bugfix: the group/contents endpoint should do the right thing
       when 'count: none' and an offset are provided.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17119: bugfix: when "count: none" is specified, the group/contents
Ward Vandewege [Wed, 24 Mar 2021 21:32:02 +0000 (17:32 -0400)]
17119: bugfix: when "count: none" is specified, the group/contents
       endpoint should not return the items_available field.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoUpdate mimemagic gem version to 0.3.6, the previous version (0.3.5) was
Ward Vandewege [Wed, 24 Mar 2021 16:18:23 +0000 (12:18 -0400)]
Update mimemagic gem version to 0.3.6, the previous version (0.3.5) was
pulled from rubygems.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoUpdate mimemagic gem version to 0.3.6, the previous version (0.3.5) was
Ward Vandewege [Wed, 24 Mar 2021 16:18:23 +0000 (12:18 -0400)]
Update mimemagic gem version to 0.3.6, the previous version (0.3.5) was
pulled from rubygems.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17119: fix tests.
Ward Vandewege [Wed, 24 Mar 2021 15:13:21 +0000 (11:13 -0400)]
17119: fix tests.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17119: implement review feedback.
Ward Vandewege [Tue, 23 Mar 2021 20:22:56 +0000 (16:22 -0400)]
17119: implement review feedback.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoMerge branch '17495-document-dedup-report'
Ward Vandewege [Tue, 23 Mar 2021 20:28:33 +0000 (16:28 -0400)]
Merge branch '17495-document-dedup-report'

closes #17495

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17495: Merge branch 'master' into 17495-document-dedup-report
Ward Vandewege [Tue, 23 Mar 2021 20:27:35 +0000 (16:27 -0400)]
17495: Merge branch 'master' into 17495-document-dedup-report

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17495: fix typo.
Ward Vandewege [Tue, 23 Mar 2021 20:27:10 +0000 (16:27 -0400)]
17495: fix typo.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17495: document the deduplication report. Fix example invocation in the
Ward Vandewege [Tue, 23 Mar 2021 18:49:46 +0000 (14:49 -0400)]
17495: document the deduplication report. Fix example invocation in the
       cli help.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17119: when the count: none option is supplied, the itemsAvailable field
Ward Vandewege [Mon, 22 Mar 2021 20:28:00 +0000 (16:28 -0400)]
17119: when the count: none option is supplied, the itemsAvailable field
       should be omitted from the response for the group contents API
       call.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoMerge branch '17353-install-warnings'
Tom Clegg [Mon, 22 Mar 2021 19:48:12 +0000 (15:48 -0400)]
Merge branch '17353-install-warnings'

fixes #17353

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago17119: add missing fields to GroupContentsOptions.
Ward Vandewege [Mon, 22 Mar 2021 17:12:47 +0000 (13:12 -0400)]
17119: add missing fields to GroupContentsOptions.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agofix(provision): add multi hosts installation examples
Javier Bértoli [Mon, 22 Mar 2021 16:32:22 +0000 (13:32 -0300)]
fix(provision): add multi hosts installation examples

refs #17246
Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@curii.com>

3 years agofix(provision): improve single host installation and documentation
Javier Bértoli [Mon, 22 Mar 2021 15:56:44 +0000 (12:56 -0300)]
fix(provision): improve single host installation and documentation

Also improved single host installation options (single, multiple hostnames)

refs #17246
Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@curii.com>

3 years agoChange the license of 2 files in the Go SDK to Apache 2, they were
Ward Vandewege [Mon, 22 Mar 2021 15:02:16 +0000 (11:02 -0400)]
Change the license of 2 files in the Go SDK to Apache 2, they were
erroneously marked as AGPL 3.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17119: add missing GroupTrash endpoint.
Ward Vandewege [Mon, 22 Mar 2021 14:37:58 +0000 (10:37 -0400)]
17119: add missing GroupTrash endpoint.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17353: Don't show config-dump warnings for empty config.
Tom Clegg [Mon, 22 Mar 2021 13:59:31 +0000 (09:59 -0400)]
17353: Don't show config-dump warnings for empty config.

Loading the empty config generates warnings about empty tokens that
aren't relevant in this context. Displaying them in terminal/logs is
misleading.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years agoRevert "Add license file to the
Ward Vandewege [Sun, 21 Mar 2021 20:08:53 +0000 (16:08 -0400)]
Revert "Add license file to the
git.arvados.org/arvados.git/sdk/go/arvados". This is not necessary now
that the toplevel COPYING file is recognized by pkg.go.dev.

This reverts commit 49c6f1e4f6c5285481a3de10deaa132cf11dd189.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoRevert "In git.arvados.org/arvados.git/sdk/go/arvados, change the name
Ward Vandewege [Sun, 21 Mar 2021 20:07:58 +0000 (16:07 -0400)]
Revert "In git.arvados.org/arvados.git/sdk/go/arvados, change the name
of the". This is not necessary now that the toplevel COPYING file is
recognized by pkg.go.dev.

This reverts commit 11924a1bd70a76ff1a349adb9f8b94ef9ae1ecf8.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoRevert "Add license file to all the git.arvados.org/arvados.git/sdk/go
Ward Vandewege [Sun, 21 Mar 2021 20:06:08 +0000 (16:06 -0400)]
Revert "Add license file to all the git.arvados.org/arvados.git/sdk/go
module". This is not necessary now that the toplevel COPYING file is
recognized by pkg.go.dev.

This reverts commit b91b5feb69b0939c99e4d71728c345ca98f5cc92.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoAppend the full license text for Apache 2.0, AGPL v3 and CC-BY-SA 3.0 to
Ward Vandewege [Sun, 21 Mar 2021 19:40:41 +0000 (15:40 -0400)]
Append the full license text for Apache 2.0, AGPL v3 and CC-BY-SA 3.0 to
the COPYING file.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoFormatting change in cc-by-sa-3.0.txt to make the license text
Ward Vandewege [Sun, 21 Mar 2021 19:39:28 +0000 (15:39 -0400)]
Formatting change in cc-by-sa-3.0.txt to make the license text
recognizable by github.com/google/licensecheck.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoAdd license file to all the git.arvados.org/arvados.git/sdk/go module
Ward Vandewege [Sun, 21 Mar 2021 15:12:22 +0000 (11:12 -0400)]
Add license file to all the git.arvados.org/arvados.git/sdk/go module
directories to make pkg.go.dev happy.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoIn git.arvados.org/arvados.git/sdk/go/arvados, change the name of the
Ward Vandewege [Sun, 21 Mar 2021 14:33:40 +0000 (10:33 -0400)]
In git.arvados.org/arvados.git/sdk/go/arvados, change the name of the
license file to make pkg.go.dev happy.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoAdd license file to the git.arvados.org/arvados.git/sdk/go/arvados
Ward Vandewege [Sun, 21 Mar 2021 14:16:15 +0000 (10:16 -0400)]
Add license file to the git.arvados.org/arvados.git/sdk/go/arvados
module directory.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17119: address review feedback.
Ward Vandewege [Sun, 21 Mar 2021 14:15:42 +0000 (10:15 -0400)]
17119: address review feedback.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17119: the home project should include filter groups.
Ward Vandewege [Sun, 21 Mar 2021 02:01:21 +0000 (22:01 -0400)]
17119: the home project should include filter groups.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoMerge branch '10458-document-crunchstat-summary'
Ward Vandewege [Fri, 19 Mar 2021 20:02:29 +0000 (16:02 -0400)]
Merge branch '10458-document-crunchstat-summary'

closes #10458

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago10458: implement review feedback.
Ward Vandewege [Fri, 19 Mar 2021 20:01:14 +0000 (16:01 -0400)]
10458: implement review feedback.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago10458: add some basic documentation for crunchstat-summary.
Ward Vandewege [Fri, 19 Mar 2021 17:07:52 +0000 (13:07 -0400)]
10458: add some basic documentation for crunchstat-summary.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoMerge branch '17476-railsapi-security-updates'
Lucas Di Pentima [Fri, 19 Mar 2021 13:39:18 +0000 (10:39 -0300)]
Merge branch '17476-railsapi-security-updates'
Closes #17476

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

3 years ago17476: Updates rails related gems.
Lucas Di Pentima [Thu, 18 Mar 2021 22:23:39 +0000 (19:23 -0300)]
17476: Updates rails related gems.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

3 years agoMerge branch '17352-arvados-api-server-dependency'
Javier Bértoli [Tue, 16 Mar 2021 19:13:36 +0000 (16:13 -0300)]
Merge branch '17352-arvados-api-server-dependency'

closes #17352

Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@curii.com>

3 years agofix(fpm,packaging): add arvados-api-server's postgresql-client dependency
Javier Bértoli [Tue, 16 Mar 2021 18:17:30 +0000 (15:17 -0300)]
fix(fpm,packaging): add arvados-api-server's postgresql-client dependency

refs #17352

Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@curii.com>

3 years ago17119: further documentation updates.
Ward Vandewege [Mon, 15 Mar 2021 21:10:57 +0000 (17:10 -0400)]
17119: further documentation updates.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17119: Make arv-mount work with the new filter groups code. Also in
Ward Vandewege [Mon, 15 Mar 2021 17:16:32 +0000 (13:16 -0400)]
17119: Make arv-mount work with the new filter groups code. Also in
arv-mount, lower the default project cache TTL from 60s to 3s,
and enable its use by default anywhere in arv-mount (it was only enabled
under home/).

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago17119: controller should export the include_old_versions flag on group
Ward Vandewege [Thu, 11 Mar 2021 15:49:42 +0000 (10:49 -0500)]
17119: controller should export the include_old_versions flag on group
       contents.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years agoDocumentation: fix copy/paste error in keep-web installation
Ward Vandewege [Wed, 10 Mar 2021 22:12:33 +0000 (17:12 -0500)]
Documentation: fix copy/paste error in keep-web installation
instructions. Add missing word in keepproxy installation instructions.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

3 years ago16669: Accept OIDC access token in federated requests.
Tom Clegg [Thu, 4 Mar 2021 21:51:12 +0000 (16:51 -0500)]
16669: Accept OIDC access token in federated requests.

...provided both local and remote clusters use the same login cluster.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years agoUpdate cwltool for bug fixes. refs #17213
Peter Amstutz [Thu, 4 Mar 2021 19:45:15 +0000 (14:45 -0500)]
Update cwltool for bug fixes. refs #17213

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 years agofix(compute-images): fix sed invokation
Javier Bértoli [Wed, 3 Mar 2021 14:34:14 +0000 (11:34 -0300)]
fix(compute-images): fix sed invokation

refs #17438

Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@curii.com>

3 years agofix(compute-images): add resolver variable to json files
Javier Bértoli [Wed, 3 Mar 2021 11:59:22 +0000 (08:59 -0300)]
fix(compute-images): add resolver variable to json files

refs #17438

Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@curii.com>

3 years agofix(compute-images): make resolver setting optional
Javier Bértoli [Wed, 3 Mar 2021 11:57:03 +0000 (08:57 -0300)]
fix(compute-images): make resolver setting optional

Also, change docker's systemd service path to /etc instead of /lib

refs #17438

Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@curii.com>

3 years ago16745: Update test.
Tom Clegg [Wed, 3 Mar 2021 15:05:02 +0000 (10:05 -0500)]
16745: Update test.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago16745: Rename session cache size metric.
Tom Clegg [Wed, 3 Mar 2021 03:25:11 +0000 (22:25 -0500)]
16745: Rename session cache size metric.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago16745: Reject unsupported APIs instead of mishandling.
Tom Clegg [Tue, 2 Mar 2021 21:27:18 +0000 (16:27 -0500)]
16745: Reject unsupported APIs instead of mishandling.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago16745: Handle GetBucketLocation API.
Tom Clegg [Tue, 2 Mar 2021 16:12:11 +0000 (11:12 -0500)]
16745: Handle GetBucketLocation API.

Previously misinterpreted as ListObjects with no delimiter, which is
very slow.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago16745: Don't store nil in an atomic.Value (panic).
Tom Clegg [Tue, 2 Mar 2021 14:55:16 +0000 (09:55 -0500)]
16745: Don't store nil in an atomic.Value (panic).

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago16745: Prune enough sessions to reach size limit, not all.
Tom Clegg [Tue, 23 Feb 2021 02:46:27 +0000 (21:46 -0500)]
16745: Prune enough sessions to reach size limit, not all.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 years ago16745: Keep a SiteFileSystem alive for multiple read requests.
Tom Clegg [Mon, 22 Feb 2021 16:10:10 +0000 (11:10 -0500)]
16745: Keep a SiteFileSystem alive for multiple read requests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>