22320: Add CheckCacheOnly option to BlockReadOptions.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

Merge branch '22320-repack-small-blocks'

refs #22320

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

Merge branch '22602-arv-copy' refs #22602

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

22320: Check final blocksInManifest.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22320: Run slow tests and write chart data only if env var is set.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22602: DRY search() to use search_paths() and add test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

22320: Fix comment typo.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

Merge branch '22660-acr-cred-leak' refs #22660

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

22660: Simpler sanitize implementation from brett

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

22602: Further improve error reporting for getting cluster creds

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

22602: Fix test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

22602: Improve error handling when instance info is wrong

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

22660: Sanitize the git remote URL

Remove the username/password section of the netloc part of the URL, if
present.  This was reported by a user that it was leaking github
tokens, as one way of providing a github token is write it as

https://x-access-token:blahblahblah@github.com/foo/bar.git

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

Bump rack from 3.1.10 to 3.1.12 in /services/api

refs #22657

Bumps [rack](https://github.com/rack/rack) from 3.1.10 to 3.1.12.
- [Release notes](https://github.com/rack/rack/releases)
- [Changelog](https://github.com/rack/rack/blob/main/CHANGELOG.md)
- [Commits](https://github.com/rack/rack/compare/v3.1.10...v3.1.12)

---
updated-dependencies:
- dependency-name: rack
  dependency-type: indirect
...

Arvados-DCO-1.1-Signed-off-by: dependabot[bot] <support@github.com>

Merge branch '17209-http-forward'

closes #17209

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

17209: Remove unused commented-out code.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

Merge branch '22644-arvados-server-install-singularity'

Refs #22644.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

22602: arv-copy checks config file first then falls back on default creds

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

Merge branch '22647-postinst-ignores-gem-install-errors'

Closes #22647, #22648.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

22647: Wordsmith comment and status message

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

22320: Export Repack() method.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22320: Remove unimplemented Underutilized option.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22320: Add test cases for 32MiB and 32MiB-1 sized blocks.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22320: Fix maxBlockSize restored to wrong value after tests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22647: Ignore `gem install` errors in RailsAPI postinst

See comments for rationale.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

22320: Fix test case cheating by repeating content.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22320: Implement full-repack, like old tests expected.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22320: Parameterize RepackCost test.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22320: Improve stats output.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22320: Fix mkdir in test.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22320: Fix test panic.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22320: Write more stats for charting.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22320: Refine repacking algorithm to handle a range of block sizes.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22320: Fix Repack bug causing segment replacements to be skipped.

repackTree must call replaceSegments with the newly computed
replacements -- not the merged set of new replacements plus
previously-applied replacements.  If it passes the merged set to
replaceSegments, some of the new replacements will be skipped.

For example, if a previous repack applied A->B, and the current repack
applies B->D and C->D, then the merged set includes A->D, and A is no
longer referenced, so replaceSegments will skip any->D.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22320: Refactor test case.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22320: Add repack-after-write test.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22320: Track repack results.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22320: Naive Repack implementation.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22644: Install Singularity from archive instead of Git

Ansible is already doing this, and it looks like something has maybe
happened with one of the submodules so it no longer gets cloned
correctly. Using the source archive is less error-prone.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

22608: Add PowerTools setup to the API install docs

Mirroring the upgrade note. Refs #22608.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

Merge branch '22608-enable-powertools'

Refs #22608.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

22608: Add upgrade note about libyaml/PowerTools dependency

This is a consequence of the upgrade to Rails 7.1.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

22608: Enable powertools repo in rocky8 test image

This is necessary to get libyaml-devel to install arvados-api-server.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

17209: Allow admin access to all container ports.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

17209: Merge branch 'main' into 17209-http-forward

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

17209: Restrict HTTP proxy access to the CR submitter.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

Merge branch '22608-upgrade-rails'

Refs #22608, #22629.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

Merge branch '22624-left-panel-uncollapse-bug' into main. Closes #22624

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

22608: Upgrade Passenger to 6.0.26

To address CVE-2025-26803.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

22608: Guard against no uuid param in find_object_by_uuid

See comments for rationale. The old code causes bad query construction
and crashes in Rails 7.2 because of
  <https://github.com/rails/rails/issues/52643>

While we can't upgrade to Rails 7.2 right now, the code is safe for
older versions. Since I spent the time to track this down, we might as
well make the change now and make a future upgrade easier.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

22608: Upgrade Rails to 7.1

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

22608: Unroll container requests token test loop

Make the separate test cases individual tests for nicer diagnostics.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

22608: Codify Ruby 2.7 requirements in RailsAPI Gemfile

We've had a few incidents of these gems getting upgraded and then
needing to be reverted, e.g.:

* f2d7a04756206c6812f71225a6d782c23db1c7d9
* 4a42e4fd1f7cc2cd5cc1938d4bdc39e3a4800306
* 2f4fb1522c89c29a94854bf9f26fb6d13959f2d4

Write these in the Gemfile to prevent future mistakes like these.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

22624: Switch to using max-width constraint when left panel collapsed

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

Merge branch '22566-left-sidebar-scroll-bug' into main. Closes #22566

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

22566: Replace custom class with disabled property

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

22566: Fix horizontal scrolling on collapsed sidepanel

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

22566: Refactor to combine get/set panel sizes, save localstorage keys and
panel settings in a type safe const

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

22566: Lower min left panel size slightly, trigger details size recalculate
on left panel collapse

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

22566: Remove unused imports

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

Merge branch '22614-railsapi-service-packaging'

Refs #22614, #22349.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

Merge branch '22359-toolbar-overflow'

closes #22359

Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

Merge branch '22408-wrong-project-toolbar'

closes #22408

Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

22408: changed currentPathIsTrash calculation

Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

Merge branch '22612-driver-bugfixes'

Closes #22612, #22619.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

17209: Fix proxy-to-other-controller case, add tests and comments.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22614: Exclude service definition from RailsAPI install directory

There's no need to have it here, and it looks like RPM might try to make
hard links between the copy in /lib and the copy in /var/www which will
fail if they're different filesystems.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

17209: Fix comment about redirect-with-cookie rationale.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

17209: Test ContainerHTTPProxy API routing.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

17209: Allow outgoing ContainerHTTPProxy req to other controller.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

17209: Fix ContainerHTTPProxy stub no-op.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

17209: Fix wrap after indent.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22359: removed debounce from overflow wrapper

Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

Merge branch '22483-tests-25-01'

closes #22483

Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

Merge branch '22545-tests-25-02'

closes #22545

Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

22545: removed stray console.log

Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

17209: Test redirect-with-cookie and router behavior.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

17209: Fix cookie response header.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

17209: Add request-id to context for ContainerHTTPProxy req.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22566: Add similar treatment to details panel

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

22566: Override previously saved percents with minimum left panel width

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

22566: Remove unused prop

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

22566: Add type and adjust indenting

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

22566: Trigger resize on nested splitter when parent resizes

Fixes being able to disappear details panel by resizing main panel

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

22566: Move types closer to usage, move splitter handlers inside component

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

22566: Remove now unused currentSideWidth and observer setter

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

22612: Clean packages at the end of compute node image build

This lets us account for all package state changes and make the image as
small as practical.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

22612: Install linux-headers in NVIDIA CUDA role

This is a prerequisite to build the driver. If these are not install,
the package just skips the actual driver build.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

22612: Reboot compute node during image build if necessary

See comments for rationale. This fixes a bug in the AMD ROCm role where
it installs headers for one version of Linux, but then might end up
using another.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

22612: Use become on compute role tasks

build-compute-node.yml was the first playbook we wrote and used
play-level become. We've gotten used to task-level become instead, so
add that where it's needed.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

22566: Remove unused isTransitioning, including actions and the store

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

22566: Enforce min left panel size using splitter

This requires switching the splitter into pixel mode to enforce a pixel minimum
Because pixel mode allocates extra space to the "primary" panel as opposed to
evenly based on percent, in order to make the main panel resize when the
window is resized, the primary/secondary panel had to be switched

Pixel mode simplifies the size calculation and also removes the need to account
for the right panel opening and closing

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

22545: separated more favorites tests

Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

22566: Remove unused styles

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

22566: Fix overflowing text in left panel side panel

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

17209: Test localdb.Conn -> gateway -> stub.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22545: moved favorites sidepanel tests into another description

Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

22602: Update arv-copy docs a bit

I switched some UUID references from "jutro" to "pirca".  I think the
original reason to use jutro is because pirca was supposed to be
cleaned up periodically (which hasn't happened) and they are
federated.  However, because we are not talking about federation in
this section, this is mostly just confusing.

There are still references to jutro under "copy a workflow" and "copy
a project" and I'm leaving them alone for now.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

17209: Forward http requests to container indicated in vhost.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

22612: Pin CUDA packages to the last Debian 11 versions

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>