arvados.git
10 years agoMerge branch 'master' into 3219-further-docker-improvements
Ward Vandewege [Tue, 29 Jul 2014 20:32:56 +0000 (22:32 +0200)]
Merge branch 'master' into 3219-further-docker-improvements

10 years agoMerge branch '3351-keep-timeout' closes #3351
Tom Clegg [Tue, 29 Jul 2014 15:58:45 +0000 (11:58 -0400)]
Merge branch '3351-keep-timeout' closes #3351

10 years ago3351: Propagate caller-provided timeout from KeepClient to KeepWriterThread.
Tom Clegg [Tue, 29 Jul 2014 14:35:26 +0000 (10:35 -0400)]
3351: Propagate caller-provided timeout from KeepClient to KeepWriterThread.

Also, use the timeout in the sign_for_old_server block (even though
this branch is unlikely to be used in real life now that the old Keep
server has been replaced).

10 years ago3235: Fix attribute keys. refs #3235
Tom Clegg [Tue, 29 Jul 2014 14:00:03 +0000 (10:00 -0400)]
3235: Fix attribute keys. refs #3235

10 years agoMerge branch '3235-top-nav-site-search' refs #3235
Tom Clegg [Tue, 29 Jul 2014 02:50:37 +0000 (22:50 -0400)]
Merge branch '3235-top-nav-site-search' refs #3235

10 years agoDo not show non-project groups in groups directory. no issue #
Tom Clegg [Tue, 29 Jul 2014 01:18:40 +0000 (21:18 -0400)]
Do not show non-project groups in groups directory. no issue #

10 years agoFix TypeError: Got an unexpected keyword argument "uuid". refs #3235
Tom Clegg [Tue, 29 Jul 2014 01:14:33 +0000 (21:14 -0400)]
Fix TypeError: Got an unexpected keyword argument "uuid". refs #3235

10 years ago3235: Fix hover highlighting on projects dropdowns.
Tom Clegg [Tue, 29 Jul 2014 00:30:10 +0000 (20:30 -0400)]
3235: Fix hover highlighting on projects dropdowns.

10 years ago3235: Show selected project in project-filter dropdown title.
Tom Clegg [Tue, 29 Jul 2014 00:12:42 +0000 (20:12 -0400)]
3235: Show selected project in project-filter dropdown title.

10 years agoDo not return non-project groups in groups#contents. refs #3235
Tom Clegg [Mon, 28 Jul 2014 23:23:04 +0000 (19:23 -0400)]
Do not return non-project groups in groups#contents. refs #3235

10 years agoMerge branch 'master' into 3219-further-docker-improvements
Ward Vandewege [Mon, 28 Jul 2014 22:46:15 +0000 (00:46 +0200)]
Merge branch 'master' into 3219-further-docker-improvements

10 years agoFix the auto_admin_user feature; it was broken by accident in
Ward Vandewege [Mon, 28 Jul 2014 22:43:14 +0000 (00:43 +0200)]
Fix the auto_admin_user feature; it was broken by accident in
commit:5f651773

refs #3219

10 years ago3235: Fix infinite scroll broken by merge.
Tom Clegg [Mon, 28 Jul 2014 21:52:51 +0000 (17:52 -0400)]
3235: Fix infinite scroll broken by merge.

10 years ago3235: Move filter-by-project to left side.
Tom Clegg [Mon, 28 Jul 2014 21:20:38 +0000 (17:20 -0400)]
3235: Move filter-by-project to left side.

10 years ago3235: Merge branch 'master' into 3235-top-nav-site-search
Tom Clegg [Mon, 28 Jul 2014 21:12:52 +0000 (17:12 -0400)]
3235: Merge branch 'master' into 3235-top-nav-site-search

Conflicts:
apps/workbench/app/views/layouts/application.html.erb

10 years agoMerge branch '3235-all-contents' refs #3235
Tom Clegg [Mon, 28 Jul 2014 21:10:16 +0000 (17:10 -0400)]
Merge branch '3235-all-contents' refs #3235

10 years ago3235: Add test case.
Tom Clegg [Fri, 25 Jul 2014 17:49:27 +0000 (13:49 -0400)]
3235: Add test case.

10 years ago3235: Fix SQL query.
Tom Clegg [Fri, 25 Jul 2014 02:10:30 +0000 (22:10 -0400)]
3235: Fix SQL query.

10 years ago3235: Split GroupsController#contents logic out to load_searchable_objects.
Tom Clegg [Thu, 24 Jul 2014 23:03:35 +0000 (19:03 -0400)]
3235: Split GroupsController#contents logic out to load_searchable_objects.

10 years ago3235: Remove errant action exemption.
Tom Clegg [Mon, 28 Jul 2014 19:56:41 +0000 (15:56 -0400)]
3235: Remove errant action exemption.

10 years ago3235: Merge branch 'master' into 3235-top-nav-site-search
Tom Clegg [Mon, 28 Jul 2014 19:45:23 +0000 (15:45 -0400)]
3235: Merge branch 'master' into 3235-top-nav-site-search

Conflicts:
apps/workbench/app/assets/javascripts/infinite_scroll.js
apps/workbench/app/views/application/_choose.html.erb
apps/workbench/app/views/layouts/application.html.erb

10 years agoSet $CRUNCH_SRC correctly when running the Docker container. refs #3370
Peter Amstutz [Mon, 28 Jul 2014 13:13:59 +0000 (09:13 -0400)]
Set $CRUNCH_SRC correctly when running the Docker container.  refs #3370

10 years ago3235: Bind Esc key to close modals.
Tom Clegg [Sun, 27 Jul 2014 22:35:46 +0000 (18:35 -0400)]
3235: Bind Esc key to close modals.

10 years ago3235: Focus search box when chooser modal appears.
Tom Clegg [Sun, 27 Jul 2014 22:28:18 +0000 (18:28 -0400)]
3235: Focus search box when chooser modal appears.

10 years ago3235: Show project filter by default (i.e., unless by_project=false).
Tom Clegg [Sun, 27 Jul 2014 22:22:53 +0000 (18:22 -0400)]
3235: Show project filter by default (i.e., unless by_project=false).

10 years ago3235: Fix "no filter / all projects" option.
Tom Clegg [Sun, 27 Jul 2014 22:03:13 +0000 (18:03 -0400)]
3235: Fix "no filter / all projects" option.

10 years ago3235: Fix multiple-select.
Tom Clegg [Sun, 27 Jul 2014 21:58:17 +0000 (17:58 -0400)]
3235: Fix multiple-select.

10 years ago3235: Make filter-by-project play nice with infinite scroll.
Tom Clegg [Sun, 27 Jul 2014 21:48:28 +0000 (17:48 -0400)]
3235: Make filter-by-project play nice with infinite scroll.

10 years ago3235: Hide section header rows for empty sections. closes #3377
Tom Clegg [Sun, 27 Jul 2014 19:34:31 +0000 (15:34 -0400)]
3235: Hide section header rows for empty sections. closes #3377

10 years ago3235: Fix infinite scroll in Search chooser.
Tom Clegg [Sun, 27 Jul 2014 19:22:38 +0000 (15:22 -0400)]
3235: Fix infinite scroll in Search chooser.

10 years ago3235: Infinite scroll error handling: Show error message and "Retry" button
Tom Clegg [Sun, 27 Jul 2014 19:19:49 +0000 (15:19 -0400)]
3235: Infinite scroll error handling: Show error message and "Retry" button
instead of immediately repeating the failed request ad infinitum.

10 years ago3235: Skip data-remote links in smoke test. They might not know format=html.
Tom Clegg [Sat, 26 Jul 2014 21:23:42 +0000 (17:23 -0400)]
3235: Skip data-remote links in smoke test. They might not know format=html.

10 years ago3235: Show multiple object types in top-nav Search modal.
Tom Clegg [Sat, 26 Jul 2014 21:08:45 +0000 (17:08 -0400)]
3235: Show multiple object types in top-nav Search modal.

10 years ago3351: Fix CollectionReader usage in arv-ls.
Tom Clegg [Sat, 26 Jul 2014 18:53:17 +0000 (14:53 -0400)]
3351: Fix CollectionReader usage in arv-ls.

10 years ago3351: Add comment about SSL timeouts.
Tom Clegg [Sat, 26 Jul 2014 18:51:19 +0000 (14:51 -0400)]
3351: Add comment about SSL timeouts.

10 years ago3351: Clean up some excess indentation.
Tom Clegg [Sat, 26 Jul 2014 18:49:02 +0000 (14:49 -0400)]
3351: Clean up some excess indentation.

10 years ago3351: Catch SSLError and show warning instead of stack trace.
Tom Clegg [Sat, 26 Jul 2014 18:48:13 +0000 (14:48 -0400)]
3351: Catch SSLError and show warning instead of stack trace.

10 years ago3351: Retry failed threads (servers) if replication is too low after one pass.
Tom Clegg [Sat, 26 Jul 2014 18:17:43 +0000 (14:17 -0400)]
3351: Retry failed threads (servers) if replication is too low after one pass.

10 years agorefs #3138
radhika [Sat, 26 Jul 2014 01:34:42 +0000 (21:34 -0400)]
refs #3138
Merge branch '3138-wiselinks'

10 years ago3138: test passing as is
radhika [Sat, 26 Jul 2014 01:33:50 +0000 (21:33 -0400)]
3138: test passing as is

10 years agoMerge branch 'master' into 3138-wiselinks
radhika [Sat, 26 Jul 2014 01:24:04 +0000 (21:24 -0400)]
Merge branch 'master' into 3138-wiselinks

Conflicts:
apps/workbench/app/views/layouts/application.html.erb

10 years ago3351: Improve "already uploading" message (and send to stderr, not stdout).
Tom Clegg [Fri, 25 Jul 2014 22:42:18 +0000 (18:42 -0400)]
3351: Improve "already uploading" message (and send to stderr, not stdout).

10 years ago3351: Do not use resume cache at all if --no-resume flag is given.
Tom Clegg [Fri, 25 Jul 2014 22:36:38 +0000 (18:36 -0400)]
3351: Do not use resume cache at all if --no-resume flag is given.

10 years agoMerge branch 'master' into 3138-wiselinks
radhika [Fri, 25 Jul 2014 21:56:51 +0000 (17:56 -0400)]
Merge branch 'master' into 3138-wiselinks

10 years ago3138: When wiselinks is initialized, selection.js does not work. Since we want to...
radhika [Fri, 25 Jul 2014 21:55:41 +0000 (17:55 -0400)]
3138: When wiselinks is initialized, selection.js does not work. Since we want to stop using selection.js in the near future, let's not initialize wiselinks object for now.

10 years ago3351: Set PUT request timeout to 60 seconds.
Tom Clegg [Fri, 25 Jul 2014 21:42:43 +0000 (17:42 -0400)]
3351: Set PUT request timeout to 60 seconds.

10 years agoMerge branch '3286-home-button' closes #3286
Tom Clegg [Fri, 25 Jul 2014 20:22:54 +0000 (16:22 -0400)]
Merge branch '3286-home-button' closes #3286

10 years ago3286: Split Home/Projects thing into Home button and Projects dropdown.
Tom Clegg [Fri, 25 Jul 2014 19:26:31 +0000 (15:26 -0400)]
3286: Split Home/Projects thing into Home button and Projects dropdown.

10 years agoDo not remove /dev/stdout on interrupt signal. No issue #
Tom Clegg [Fri, 25 Jul 2014 17:51:51 +0000 (13:51 -0400)]
Do not remove /dev/stdout on interrupt signal. No issue #

10 years ago3235: Add test case.
Tom Clegg [Fri, 25 Jul 2014 17:49:27 +0000 (13:49 -0400)]
3235: Add test case.

10 years agoMerge branch 'staging'
Brett Smith [Fri, 25 Jul 2014 12:04:33 +0000 (08:04 -0400)]
Merge branch 'staging'

Closes #3315.  Thanks Guillermo!

10 years agoCreate temporary directory if it does not exist
Guillermo Carrasco [Wed, 9 Jul 2014 19:02:27 +0000 (15:02 -0400)]
Create temporary directory if it does not exist

10 years ago3235: Fix SQL query.
Tom Clegg [Fri, 25 Jul 2014 02:10:30 +0000 (22:10 -0400)]
3235: Fix SQL query.

10 years ago3235: Split GroupsController#contents logic out to load_searchable_objects.
Tom Clegg [Thu, 24 Jul 2014 23:03:35 +0000 (19:03 -0400)]
3235: Split GroupsController#contents logic out to load_searchable_objects.

10 years ago3321: Workbench copes when pipeline components have an odd form.
Brett Smith [Thu, 24 Jul 2014 20:18:35 +0000 (16:18 -0400)]
3321: Workbench copes when pipeline components have an odd form.

Closes #3321.

10 years agoAdd Keep install instructions (manual).
Ward Vandewege [Thu, 24 Jul 2014 16:58:43 +0000 (12:58 -0400)]
Add Keep install instructions (manual).

no issue #

10 years agoMerge branch '3200-ajax-error-handling'
Brett Smith [Thu, 24 Jul 2014 15:03:04 +0000 (11:03 -0400)]
Merge branch '3200-ajax-error-handling'

Closes #3200, #3207, #3251, #3276, #3322.

10 years ago3200: Improve error handling in Workbench's API client.
Brett Smith [Wed, 23 Jul 2014 20:50:18 +0000 (16:50 -0400)]
3200: Improve error handling in Workbench's API client.

* Fix the class used for error responses that can be parsed but don't
  have a dedicated subclass.

* Ensure that exception.api_response[:errors] is always an array.

This improves the error reporting for #3207.

10 years ago3200: X-Editable renders errors even without a message array.
Brett Smith [Wed, 23 Jul 2014 20:29:12 +0000 (16:29 -0400)]
3200: X-Editable renders errors even without a message array.

The previous version was causing the X-Editable popup to spin
infinitely when the JSON errors were null.  See #3207, #3251.

10 years ago3200: Workbench copes better when a tab fails to load.
Brett Smith [Tue, 22 Jul 2014 22:04:58 +0000 (18:04 -0400)]
3200: Workbench copes better when a tab fails to load.

10 years agoMerge branch 'master' into 3219-further-docker-improvements
Ward Vandewege [Thu, 24 Jul 2014 14:00:35 +0000 (10:00 -0400)]
Merge branch 'master' into 3219-further-docker-improvements

10 years ago* add argument help to build.sh
Ward Vandewege [Wed, 23 Jul 2014 01:42:03 +0000 (21:42 -0400)]
* add argument help to build.sh

* fix clean/realclean/deepclean invocation syntax in documentation

refs #3219

10 years agoSuppress warnings and spurious error messages for the clean, realclean
Ward Vandewege [Wed, 23 Jul 2014 01:18:15 +0000 (21:18 -0400)]
Suppress warnings and spurious error messages for the clean, realclean
and deepclean targets.

refs #3219

10 years agoMake --deepclean also remove the crosbymichael/skydns and crosbymichael/skydock images.
Ward Vandewege [Tue, 22 Jul 2014 20:26:18 +0000 (16:26 -0400)]
Make --deepclean also remove the crosbymichael/skydns and crosbymichael/skydock images.

refs #3219

10 years agoMake the build script prompt for a shell login name.
Ward Vandewege [Tue, 22 Jul 2014 20:19:53 +0000 (16:19 -0400)]
Make the build script prompt for a shell login name.

refs #3219

10 years ago2044: Improve reporting when project sharing fails.
Brett Smith [Tue, 22 Jul 2014 20:12:59 +0000 (16:12 -0400)]
2044: Improve reporting when project sharing fails.

Our select modal knows how to render an errors key in the JSON
response.  This commit adjusts the project controller to conform to
this convention.  Refs #2044, #3200.

10 years agoMerge branch '2769-keep-delete-request'
Tim Pierce [Tue, 22 Jul 2014 20:10:24 +0000 (16:10 -0400)]
Merge branch '2769-keep-delete-request'

Refs #2769

10 years ago2769: reorganize REST handlers
Tim Pierce [Tue, 22 Jul 2014 20:09:28 +0000 (16:09 -0400)]
2769: reorganize REST handlers

Reorganizing REST handlers into their own source file.

Refs #2769.

10 years agoWhitespace fixes
Ward Vandewege [Tue, 22 Jul 2014 18:48:55 +0000 (14:48 -0400)]
Whitespace fixes

refs #3219

10 years ago* move the downloading of skydns and skydock from arvdock to
Ward Vandewege [Tue, 22 Jul 2014 18:44:16 +0000 (14:44 -0400)]
* move the downloading of skydns and skydock from arvdock to
  build_tools/Makefile

* add echo statements to the start of build steps in
  build_tools/Makefile

refs #3219

10 years agoMerge branch 'master' into 3219-further-docker-improvements
Ward Vandewege [Tue, 22 Jul 2014 18:21:13 +0000 (14:21 -0400)]
Merge branch 'master' into 3219-further-docker-improvements

10 years ago* Update docs to reflect that crunch is now supported.
Ward Vandewege [Tue, 22 Jul 2014 18:18:35 +0000 (14:18 -0400)]
* Update docs to reflect that crunch is now supported.

* Rename --mrproper to --deepclean

refs #3219

10 years agoMerge branch 'master' into 3138-wiselinks
radhika [Tue, 22 Jul 2014 16:00:26 +0000 (12:00 -0400)]
Merge branch 'master' into 3138-wiselinks

10 years ago3138: add wiselinks data-push to project link.
radhika [Tue, 22 Jul 2014 15:59:28 +0000 (11:59 -0400)]
3138: add wiselinks data-push to project link.

10 years agoFix extra row left behind after deleting a pipeline instance. closes #2929
Tom Clegg [Mon, 21 Jul 2014 22:27:03 +0000 (18:27 -0400)]
Fix extra row left behind after deleting a pipeline instance. closes #2929

10 years ago3138: Split body into a separate layout for wiselinks.
Tom Clegg [Mon, 21 Jul 2014 21:56:35 +0000 (17:56 -0400)]
3138: Split body into a separate layout for wiselinks.

10 years ago2044: Make project sharing tests more forgiving of Ajax timing.
Brett Smith [Mon, 21 Jul 2014 20:57:07 +0000 (16:57 -0400)]
2044: Make project sharing tests more forgiving of Ajax timing.

Apparently waiting our default 5 seconds is not always sufficient to
get an Ajax response that requires a roundtrip to the API server.
Wait longer in these cases.  Not the most elegant solution, but I
don't see a better option.  Refs #2044.

10 years ago2044: Workbench resource lists support Enumerable-style select.
Brett Smith [Mon, 21 Jul 2014 20:24:37 +0000 (16:24 -0400)]
2044: Workbench resource lists support Enumerable-style select.

Refs #2044.  Enumerable-style select is used in places like the groups
index.

10 years agoarvdock starts 2 compute nodes, always.
Ward Vandewege [Mon, 21 Jul 2014 20:20:18 +0000 (16:20 -0400)]
arvdock starts 2 compute nodes, always.

refs #3219

10 years agoMerge branch '3072-empty-collection-bugfix'
Tim Pierce [Mon, 21 Jul 2014 19:35:29 +0000 (15:35 -0400)]
Merge branch '3072-empty-collection-bugfix'

closes #3072.

10 years agoMerge branch 'master' into 3138-wiselinks
radhika [Mon, 21 Jul 2014 19:06:50 +0000 (15:06 -0400)]
Merge branch 'master' into 3138-wiselinks

10 years agocloses #3140
radhika [Mon, 21 Jul 2014 19:03:49 +0000 (15:03 -0400)]
closes #3140
Merge branch '3140-project-content-tabs'

10 years agoMerge branch 'master' into 3140-project-content-tabs
radhika [Mon, 21 Jul 2014 19:03:33 +0000 (15:03 -0400)]
Merge branch 'master' into 3140-project-content-tabs

10 years agoMerge branch 'master' into 3140-project-content-tabs
radhika [Mon, 21 Jul 2014 19:02:25 +0000 (15:02 -0400)]
Merge branch 'master' into 3140-project-content-tabs

Conflicts:
apps/workbench/app/controllers/projects_controller.rb

10 years ago3072: rendering "Empty Collection" in default_name
Tim Pierce [Mon, 21 Jul 2014 18:56:17 +0000 (14:56 -0400)]
3072: rendering "Empty Collection" in default_name

Collection.default_name now renders "Empty Collection" for collection
d41d8cd98f00b204e9800998ecf8427e.

Refs #3072.

10 years agoMerge branch '3182-workbench-test-race'
Tom Clegg [Mon, 21 Jul 2014 18:52:35 +0000 (14:52 -0400)]
Merge branch '3182-workbench-test-race'
closes #3182

10 years ago3182: Fix races by using find() instead of {sleep; page.has_text?}.
Tom Clegg [Mon, 21 Jul 2014 18:50:10 +0000 (14:50 -0400)]
3182: Fix races by using find() instead of {sleep; page.has_text?}.

10 years ago3235: Fix errant merge.
Tom Clegg [Mon, 21 Jul 2014 18:30:05 +0000 (14:30 -0400)]
3235: Fix errant merge.

10 years ago3235: Merge branch 'master' into 3235-top-nav-site-search
Tom Clegg [Mon, 21 Jul 2014 18:28:17 +0000 (14:28 -0400)]
3235: Merge branch 'master' into 3235-top-nav-site-search

Conflicts:
apps/workbench/app/views/application/_choose.html.erb

10 years ago3235: Fix project dropdown, use it when choosing collections.
Tom Clegg [Mon, 21 Jul 2014 18:17:34 +0000 (14:17 -0400)]
3235: Fix project dropdown, use it when choosing collections.

10 years agoRemove extra spinner. closes #3301
Tom Clegg [Mon, 21 Jul 2014 18:15:13 +0000 (14:15 -0400)]
Remove extra spinner. closes #3301

10 years ago3170: Use find().all() instead of page.all() to accommodate ajax content. refs #3170...
Tom Clegg [Mon, 21 Jul 2014 17:37:53 +0000 (13:37 -0400)]
3170: Use find().all() instead of page.all() to accommodate ajax content. refs #3170, #2044

10 years ago3170: Fix stale use of tab_pane_valid_state. refs #3170
Tom Clegg [Mon, 21 Jul 2014 17:24:28 +0000 (13:24 -0400)]
3170: Fix stale use of tab_pane_valid_state. refs #3170

10 years ago3235: Hide projects dropdown unless caller asked for it.
Tom Clegg [Mon, 21 Jul 2014 17:20:51 +0000 (13:20 -0400)]
3235: Hide projects dropdown unless caller asked for it.

10 years agoMerge branch '3170-refresh-tab-pane'
Tom Clegg [Mon, 21 Jul 2014 17:02:17 +0000 (13:02 -0400)]
Merge branch '3170-refresh-tab-pane'
closes #3170

10 years ago3170: Merge branch 'master' into 3170-refresh-tab-pane
Tom Clegg [Mon, 21 Jul 2014 17:00:42 +0000 (13:00 -0400)]
3170: Merge branch 'master' into 3170-refresh-tab-pane

10 years ago3170: Add comments.
Tom Clegg [Mon, 21 Jul 2014 17:00:34 +0000 (13:00 -0400)]
3170: Add comments.

10 years agoMerge branch '2044-workbench-project-sharing'
Brett Smith [Mon, 21 Jul 2014 16:42:03 +0000 (12:42 -0400)]
Merge branch '2044-workbench-project-sharing'

Closes #2044, #2749, #3238.

10 years ago2044: Add Workbench interface to manage project sharing.
Brett Smith [Tue, 15 Jul 2014 20:16:38 +0000 (16:16 -0400)]
2044: Add Workbench interface to manage project sharing.

This empowers administrators to add, modify, and remove permission
links on projects.

10 years ago2044: Workbench route to share a project with others.
Brett Smith [Mon, 21 Jul 2014 16:18:24 +0000 (12:18 -0400)]
2044: Workbench route to share a project with others.

This route is intended to support AJAX requests from the interface to
share a project with one or more users/groups.