radhika [Sat, 8 Nov 2014 03:50:23 +0000 (22:50 -0500)]
Merge branch 'master' into 4024-pipeline-instances-scroll
radhika [Sat, 8 Nov 2014 03:49:38 +0000 (22:49 -0500)]
4024: simplify search box
radhika [Sat, 8 Nov 2014 00:33:43 +0000 (19:33 -0500)]
4024: rearrange partial handling
radhika [Sat, 8 Nov 2014 00:14:05 +0000 (19:14 -0500)]
4024: scrolling + search works now that filters are included in next page href.
Tom Clegg [Fri, 7 Nov 2014 22:36:52 +0000 (17:36 -0500)]
4024: Test that items_available takes filters into account.
radhika [Fri, 7 Nov 2014 22:32:32 +0000 (17:32 -0500)]
4024: comment out code that disables scrolling when search is used.
Peter Amstutz [Fri, 7 Nov 2014 22:01:56 +0000 (17:01 -0500)]
Tweak uuid of test fixture so it doesn't match other tests unintentionally. refs #4084
Brett Smith [Fri, 7 Nov 2014 21:00:53 +0000 (16:00 -0500)]
PySDK CollectionReader can get empty collection.
Fixing a regression from refs #3706.
Peter Amstutz [Fri, 7 Nov 2014 20:50:22 +0000 (15:50 -0500)]
Merge branch '4084-log-pane-refresh' closes #4084
radhika [Fri, 7 Nov 2014 20:25:47 +0000 (15:25 -0500)]
4024: disable scrolling when search filter is used; otherwise, non-matching items are also displayed in page two onwards.
radhika [Fri, 7 Nov 2014 18:51:45 +0000 (13:51 -0500)]
4024: trailing white space
radhika [Fri, 7 Nov 2014 18:50:18 +0000 (13:50 -0500)]
4024: a few more test cases for search filter in pipeline instances page.
radhika [Fri, 7 Nov 2014 16:47:54 +0000 (11:47 -0500)]
4024: add tests for search filter in pipelin_instances page.
radhika [Fri, 7 Nov 2014 16:26:28 +0000 (11:26 -0500)]
Merge branch 'master' into 4024-pipeline-instances-scroll
radhika [Fri, 7 Nov 2014 16:25:54 +0000 (11:25 -0500)]
4024: add search filter to pipeline instances page.
Peter Amstutz [Fri, 7 Nov 2014 15:22:26 +0000 (10:22 -0500)]
4084: Add 'arv-log-refresh-control' div to job log pane. Log scrolling test tests both pipeline_instance and job log panes.
radhika [Fri, 7 Nov 2014 15:12:09 +0000 (10:12 -0500)]
4024: add integration tests for pipeline_instances page infinite scrolling.
Peter Amstutz [Fri, 7 Nov 2014 14:28:59 +0000 (09:28 -0500)]
Merge branch '4334-idle-star-is-down' closes #4334
Peter Amstutz [Fri, 7 Nov 2014 14:28:45 +0000 (09:28 -0500)]
Merge branch '4310-lock-before-fail' closes #4310 (again)
Peter Amstutz [Fri, 7 Nov 2014 14:22:34 +0000 (09:22 -0500)]
4310: Qualify namespace of AlreadyLockedError
radhika [Fri, 7 Nov 2014 14:06:09 +0000 (09:06 -0500)]
4024: add infinite scrolling to pipeline_instances page.
Peter Amstutz [Fri, 7 Nov 2014 13:53:55 +0000 (08:53 -0500)]
4310: Lock job before changing its state to failed.
Peter Amstutz [Thu, 6 Nov 2014 22:02:34 +0000 (17:02 -0500)]
Merge branch '4314-crunch-token-expire' refs #4314 refs #4310
Peter Amstutz [Thu, 6 Nov 2014 21:51:40 +0000 (16:51 -0500)]
4314: Don't expire the token if the job is still in queued state.
Brett Smith [Thu, 6 Nov 2014 20:49:32 +0000 (15:49 -0500)]
Merge branch '4408-collection-sharing-login-fix-wip'
Closes #4408.
Brett Smith [Thu, 6 Nov 2014 16:59:00 +0000 (11:59 -0500)]
4408: Workbench Collection sharing allows file downloads again.
Earlier we refactored our API token loading code to load User.current
to check that it was valid. This approach doesn't work when we're
presenting shared Collections, because the token usually won't be
scoped to get user information. Skip the check for this specific
case.
Peter Amstutz [Thu, 6 Nov 2014 19:22:40 +0000 (14:22 -0500)]
4334: Convert "idle*" state to "down"
Tim Pierce [Thu, 6 Nov 2014 19:14:35 +0000 (14:14 -0500)]
Merge branch '4088-collection-show-files-filter'
Fixes #4088.
Peter Amstutz [Thu, 6 Nov 2014 18:56:18 +0000 (13:56 -0500)]
Go to next job after fail_job when there is a tag mismatch. refs #4310
Peter Amstutz [Thu, 6 Nov 2014 18:18:03 +0000 (13:18 -0500)]
Merge branch '4310-git-tag-race' closes #4310
Peter Amstutz [Thu, 6 Nov 2014 18:11:09 +0000 (13:11 -0500)]
4310: Remove stderr redirect from git rev-list, add it to git tag. Prefix log
output with "dispatch: ". Tweak error message if rev-list fails.
Ward Vandewege [Thu, 6 Nov 2014 18:00:46 +0000 (13:00 -0500)]
Merge branch '4383-easy-install'
refs #4383
Ward Vandewege [Thu, 6 Nov 2014 18:00:22 +0000 (13:00 -0500)]
Merge branch 'master' into 4383-easy-install
refs #4383
Ward Vandewege [Thu, 6 Nov 2014 17:59:39 +0000 (12:59 -0500)]
Another documentation tweak based on review feedback.
closes #4383
Peter Amstutz [Thu, 6 Nov 2014 16:37:49 +0000 (11:37 -0500)]
4310: Fix race condition between testing for tag and setting tag by reversing
order of operations: try to set the tag, and only test for it if there is an
error.
Tom Clegg [Thu, 6 Nov 2014 16:33:07 +0000 (11:33 -0500)]
Merge branch '4389-breadcrumbs-infinite-loop' closes #4389
Ward Vandewege [Thu, 6 Nov 2014 16:30:11 +0000 (11:30 -0500)]
Install instructions: be a bit more explicit that arvdock is downloaded
and saved in the current working directory.
refs #4383
Tom Clegg [Thu, 6 Nov 2014 16:12:58 +0000 (11:12 -0500)]
4084: Fix wrong state name: jobs are Running, pipelines are RunningOn[...].
Ward Vandewege [Thu, 6 Nov 2014 16:09:00 +0000 (11:09 -0500)]
Merge branch 'master' into 4383-easy-install
refs #4383
Ward Vandewege [Thu, 6 Nov 2014 16:04:36 +0000 (11:04 -0500)]
Only try to install .config/arvados/settings.conf if we have a token to
put in there.
refs #4383
Tim Pierce [Thu, 6 Nov 2014 16:02:50 +0000 (11:02 -0500)]
4088: code review feedback
* Modified styling for "Select all" and "Unselect all"
* "filename filter" -> "filename regex"
* Changed refutations to assertions to avoid running afoul of AJAX race
conditions
* Refactored checkbox assertions into a helper
Tom Clegg [Thu, 6 Nov 2014 15:55:07 +0000 (10:55 -0500)]
4389: Merge branch 'master' into 4389-breadcrumbs-infinite-loop
Tom Clegg [Thu, 6 Nov 2014 15:53:13 +0000 (10:53 -0500)]
4084: Update views that were still using pane-anchor.
Peter Amstutz [Thu, 6 Nov 2014 15:26:21 +0000 (10:26 -0500)]
add 'arv-run' to setup.py refs #3609
Ward Vandewege [Thu, 6 Nov 2014 15:25:01 +0000 (10:25 -0500)]
Add more tests so that we cover all possible combinations of the
auto_admin_first_user and auto_admin_user configuration settings.
refs #4383
Ward Vandewege [Thu, 6 Nov 2014 15:23:11 +0000 (10:23 -0500)]
Update the behavior of the auto_admin_user configuration field a bit to
make it more intuitive: the first user created with an e-mail address
that matches auto_admin_user will now become admin, regardless of the
presence of other admin users. Any subsequent accounts created with that
e-mail address will no longer become admin.
refs #4383
Tom Clegg [Wed, 5 Nov 2014 22:48:30 +0000 (17:48 -0500)]
4389: Add test.
Peter Amstutz [Wed, 5 Nov 2014 20:43:40 +0000 (15:43 -0500)]
Merge branch 'origin-3609-arv-run' into master closes #3609
Conflicts:
sdk/cli/bin/arv
Brett Smith [Wed, 5 Nov 2014 19:29:14 +0000 (14:29 -0500)]
Merge branch '4357-node-manager-busy-nodes-wip'
Closes #4357, #4370.
Brett Smith [Fri, 31 Oct 2014 17:59:59 +0000 (13:59 -0400)]
4357: Node Manager boots new nodes when up nodes are busy.
The key part of this commit is the change to _nodes_wanted.
Everything else provides the information to make that calculation.
This changes the daemon test to use real monitor actors, rather than a
mock. This hurts test isolation a bit, but it's really tricky to mock
individual monitors otherwise. Because monitors only communicate with
the daemon itself, this seems like a worthwhile trade-off; it doesn't
introduce external dependencies or noticeably increase test time.
Tom Clegg [Wed, 5 Nov 2014 17:22:03 +0000 (12:22 -0500)]
4389: Merge branch 'master' into 4389-breadcrumbs-infinite-loop
Brett Smith [Wed, 5 Nov 2014 16:31:42 +0000 (11:31 -0500)]
Merge branch '4303-crunch-retry-logging-wip'
Closes #4303, #4385.
Brett Smith [Fri, 31 Oct 2014 18:54:25 +0000 (14:54 -0400)]
4303: crunch-job logs when it retries API calls.
Brett Smith [Wed, 5 Nov 2014 16:27:50 +0000 (11:27 -0500)]
Fix `arv keep copy` → `arv copy` wrapper.
No issue #.
Ward Vandewege [Wed, 5 Nov 2014 15:21:24 +0000 (10:21 -0500)]
Merge branch 'master' into 4383-easy-install
Conflicts:
docker/api/application.yml.in
refs #4383
Ward Vandewege [Wed, 5 Nov 2014 15:18:31 +0000 (10:18 -0500)]
Add unit tests for new auto_admin_first_user configuration setting.
refs #4383
Tom Clegg [Wed, 5 Nov 2014 08:52:58 +0000 (03:52 -0500)]
4084: Add comment.
Tom Clegg [Wed, 5 Nov 2014 08:16:33 +0000 (03:16 -0500)]
4084: Fix dashboard refresh.
Tom Clegg [Wed, 5 Nov 2014 07:58:20 +0000 (02:58 -0500)]
4084: Remove excess loaded class.
Tom Clegg [Wed, 5 Nov 2014 07:17:56 +0000 (02:17 -0500)]
4084: Update comments.
Tom Clegg [Wed, 5 Nov 2014 07:02:37 +0000 (02:02 -0500)]
4084: Ignore bubbling arv-log-event events, just process each once at the original target.
Tom Clegg [Wed, 5 Nov 2014 04:28:22 +0000 (23:28 -0500)]
4084: Merge branch 'master' into 4084-log-pane-refresh-TC
Conflicts:
services/api/test/fixtures/jobs.yml
Tom Clegg [Wed, 5 Nov 2014 04:20:23 +0000 (23:20 -0500)]
4084: Use assert_text, not assert page_has_text?, to make tests reliable.
Tom Clegg [Wed, 5 Nov 2014 03:54:12 +0000 (22:54 -0500)]
4084: Skip the "inactive pane" optimization when the div is not a tab pane.
Content divs that are _not_ tabbed panes no longer need to remember to
add an "active" flag.
Tom Clegg [Wed, 5 Nov 2014 03:40:48 +0000 (22:40 -0500)]
4084: Fix up whitespace (4-space indent, like the other *.js)
Peter Amstutz [Wed, 5 Nov 2014 02:28:12 +0000 (21:28 -0500)]
3609: Simplify "group" example a bit more.
Peter Amstutz [Wed, 5 Nov 2014 02:05:00 +0000 (21:05 -0500)]
3609: Further improve documentation and code comments.
Tom Clegg [Wed, 5 Nov 2014 00:25:08 +0000 (19:25 -0500)]
4084: Move all pane state into $pane, flatten panes with multiple entry points.
Peter Amstutz [Tue, 4 Nov 2014 21:28:54 +0000 (16:28 -0500)]
3609: Documentation improvements. More error checking on run-command list function evaluation.
Tom Clegg [Sat, 1 Nov 2014 19:45:04 +0000 (15:45 -0400)]
4389: Add debugging tools to dev bundle.
Tom Clegg [Sat, 1 Nov 2014 19:44:23 +0000 (15:44 -0400)]
4389: Fix infinite loop when ownership trail terminates at a self-owning user.
Brett Smith [Tue, 4 Nov 2014 17:38:55 +0000 (12:38 -0500)]
4412: Remaining Ruby clients use :body_object for API requests.
A follow-up from the last commit. Refs #4412.
Brett Smith [Tue, 4 Nov 2014 17:31:00 +0000 (12:31 -0500)]
4412: arv edit consistently uses :body_object in API requests.
Fixes #4412.
Peter Amstutz [Tue, 4 Nov 2014 15:57:37 +0000 (10:57 -0500)]
Merge branch '4031-fix-graph-connections' closes #4031
Peter Amstutz [Tue, 4 Nov 2014 15:35:09 +0000 (10:35 -0500)]
4084: Remove "no-auto-reload" css class hint, tabs no longer reload on click by
default so it is not necessary to have a class to suppress that behavior.
Phil Hodgson [Tue, 4 Nov 2014 15:16:21 +0000 (16:16 +0100)]
Merge branch '3618-column-ordering' closes #3618
Peter Amstutz [Tue, 4 Nov 2014 15:15:16 +0000 (10:15 -0500)]
4031: Fix tests. Move RequestDuck to test_helper.rb so as not to duplicate code.
Tom Clegg [Tue, 4 Nov 2014 14:48:44 +0000 (09:48 -0500)]
Update version dependency to ensure CollectionReader has a normalize() method. refs #3706
Phil Hodgson [Tue, 4 Nov 2014 14:47:11 +0000 (15:47 +0100)]
Merge branch 'master' into 3618-column-ordering
Phil Hodgson [Tue, 4 Nov 2014 13:58:44 +0000 (14:58 +0100)]
3618: accommodate new fixture indexing in pipeline_instance tests (including run-time=0 test)
Phil Hodgson [Tue, 4 Nov 2014 11:32:55 +0000 (12:32 +0100)]
3618: accommodate new fixture indexing in pipeline_instance tests
Ward Vandewege [Mon, 3 Nov 2014 22:32:28 +0000 (17:32 -0500)]
When auto_admin_first_user is set to true (default false), the first
user to sign in on a new installation will be an admin.
refs #4383
Tom Clegg [Mon, 3 Nov 2014 22:30:15 +0000 (17:30 -0500)]
Merge branch '3706-keep-warning' closes #3706
Tom Clegg [Mon, 3 Nov 2014 22:27:54 +0000 (17:27 -0500)]
3706: Oops, the test was broken, the feature works fine.
Tom Clegg [Mon, 3 Nov 2014 22:13:38 +0000 (17:13 -0500)]
3706: Add (skipped) test for broken max_manifest_depth=0 feature.
Peter Amstutz [Mon, 3 Nov 2014 21:15:31 +0000 (16:15 -0500)]
4084: Only load tab on switch if it doesn't have "pane-loaded" class. Increase
default throttle to 15 sec instead of 3 (but refresh panels can set their own
throttle time.)
Peter Amstutz [Mon, 3 Nov 2014 21:00:00 +0000 (16:00 -0500)]
4031: Add owner_uuid to graph_test_collection fixtures.
Tom Clegg [Mon, 3 Nov 2014 20:27:13 +0000 (15:27 -0500)]
3706: Merge branch 'master' into 3706-keep-warning
Peter Amstutz [Mon, 3 Nov 2014 20:07:10 +0000 (15:07 -0500)]
Merge remote-tracking branch 'origin/master' into 4031-fix-graph-connections
Conflicts:
services/api/test/fixtures/collections.yml
Peter Amstutz [Mon, 3 Nov 2014 20:06:09 +0000 (15:06 -0500)]
4031: Improve provenance graph tests for readability, use fixtures instead of
hardcoded hashes. Improve efficiency of matching collections in search_edges.
Remove spurious debug code.
Tom Clegg [Mon, 3 Nov 2014 19:33:15 +0000 (14:33 -0500)]
3706: Remove superfluous conditional.
Tom Clegg [Mon, 3 Nov 2014 18:33:06 +0000 (13:33 -0500)]
3706: Add back "collections.get => 404" to "fallback to Keep" test.
Ward Vandewege [Mon, 3 Nov 2014 18:31:26 +0000 (13:31 -0500)]
The sso server docker image is not used by default at the moment, so
arvdock shouldn't try to start it unless explicitly requested (part 2).
refs #4383
Ward Vandewege [Mon, 3 Nov 2014 18:31:26 +0000 (13:31 -0500)]
The sso server docker image is not used by default at the moment, so
arvdock shouldn't try to start it unless explicitly requested (part 2).
refs #4383
Tom Clegg [Mon, 3 Nov 2014 14:35:59 +0000 (09:35 -0500)]
3706: Prefer "is None" and "is not None" to "== None" and "!= None".
Tom Clegg [Mon, 3 Nov 2014 14:33:16 +0000 (09:33 -0500)]
3706: Mutating normalize() does not return self.
Tom Clegg [Mon, 3 Nov 2014 14:32:16 +0000 (09:32 -0500)]
3706: Process directory trees in sorted() order, instead of the order
returned by os.listdir().
This causes write_directory_tree() to produce a manifest that is
normalized to the greatest extent possible for the given
max_manifest_depth.
Brett Smith [Mon, 3 Nov 2014 16:10:51 +0000 (11:10 -0500)]
4388: Ruby Keep::Manifest skips blank lines in manifests.
Closes #4388.
Ward Vandewege [Mon, 3 Nov 2014 15:33:54 +0000 (10:33 -0500)]
The sso server docker image is not used by default at the moment, so
arvdock shouldn't try to start it unless explicitly requested.
refs #4383
Ward Vandewege [Mon, 3 Nov 2014 15:33:54 +0000 (10:33 -0500)]
The sso server docker image is not used by default at the moment, so
arvdock shouldn't try to start it unless explicitly requested.
refs #4383