arvados.git
7 years ago12037: Support CWL v1.0.1 spec.
Peter Amstutz [Wed, 26 Jul 2017 15:11:24 +0000 (11:11 -0400)]
12037: Support CWL v1.0.1 spec.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curoverse.com>

7 years agoMerge branch '11906-health-check-lib'
Tom Clegg [Fri, 21 Jul 2017 18:01:45 +0000 (14:01 -0400)]
Merge branch '11906-health-check-lib'

refs #11906

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11906: Clarify "zero value" test.
Tom Clegg [Fri, 21 Jul 2017 17:53:32 +0000 (13:53 -0400)]
11906: Clarify "zero value" test.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11906: Test 404 cases.
Tom Clegg [Fri, 21 Jul 2017 17:49:22 +0000 (13:49 -0400)]
11906: Test 404 cases.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago1906: Fix up doc comment.
Tom Clegg [Fri, 21 Jul 2017 17:49:04 +0000 (13:49 -0400)]
1906: Fix up doc comment.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11906: Remove keepstore's health-check unit tests.
Tom Clegg [Thu, 20 Jul 2017 21:24:09 +0000 (17:24 -0400)]
11906: Remove keepstore's health-check unit tests.

Now that the health check handler has its own unit tests, keepstore
only needs to check that it's wired up correctly.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11906: Add tests for sdk/go/health.
Tom Clegg [Thu, 20 Jul 2017 21:16:41 +0000 (17:16 -0400)]
11906: Add tests for sdk/go/health.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11906: Use sdk/go/health for keepstore health checks.
Tom Clegg [Thu, 20 Jul 2017 20:18:38 +0000 (16:18 -0400)]
11906: Use sdk/go/health for keepstore health checks.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11906: Refactor health-check handler into SDK.
Tom Clegg [Thu, 20 Jul 2017 17:45:12 +0000 (13:45 -0400)]
11906: Refactor health-check handler into SDK.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agoStyle fixes.
Tom Clegg [Thu, 20 Jul 2017 20:23:00 +0000 (16:23 -0400)]
Style fixes.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago10805: Bump debian version in fuse install doc.
Tom Clegg [Thu, 20 Jul 2017 20:20:39 +0000 (16:20 -0400)]
10805: Bump debian version in fuse install doc.

refs #10805

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agocloses #11995
radhika [Thu, 20 Jul 2017 17:04:50 +0000 (13:04 -0400)]
closes #11995

Merge branch '11995-collecion-filetypes'

Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika@curoverse.com>

7 years ago1195: add .bed and .cwl to file types that can previewed
radhika [Thu, 20 Jul 2017 13:20:53 +0000 (09:20 -0400)]
1195: add .bed and .cwl to file types that can previewed

Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika@curoverse.com>

7 years ago10805: Build llfuse-1.2 for ubuntu1604.
Tom Clegg [Thu, 20 Jul 2017 14:52:38 +0000 (10:52 -0400)]
10805: Build llfuse-1.2 for ubuntu1604.

refs #10805

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agoMerge branch '10805-avoid-llfuse-deadlock'
Tom Clegg [Thu, 20 Jul 2017 13:45:45 +0000 (09:45 -0400)]
Merge branch '10805-avoid-llfuse-deadlock'

closes #10805

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago10805: Skip llfuse.close() to avoid llfuse deadlocks in test suite.
Tom Clegg [Thu, 20 Jul 2017 12:29:34 +0000 (08:29 -0400)]
10805: Skip llfuse.close() to avoid llfuse deadlocks in test suite.

See https://bitbucket.org/nikratio/python-llfuse/issues/108

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agoMerge branch '10805-llfuse-1.2'
Tom Clegg [Wed, 19 Jul 2017 20:53:29 +0000 (16:53 -0400)]
Merge branch '10805-llfuse-1.2'

refs #10805

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago10805: Fix crash during shutdown when running with llfuse 1.x.
Tom Clegg [Wed, 19 Jul 2017 20:15:17 +0000 (16:15 -0400)]
10805: Fix crash during shutdown when running with llfuse 1.x.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agoMerge branch '11842-crunchstat-summary-dygraphs'
Tom Clegg [Wed, 19 Jul 2017 16:52:27 +0000 (12:52 -0400)]
Merge branch '11842-crunchstat-summary-dygraphs'

refs #11842

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agorefs #11906
radhika [Wed, 19 Jul 2017 14:10:59 +0000 (10:10 -0400)]
refs #11906

Merge branch '11906-wb-ping'

Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika@curoverse.com>

7 years ago11906: healthcheck ping for workbench
radhika [Tue, 18 Jul 2017 21:40:21 +0000 (17:40 -0400)]
11906: healthcheck ping for workbench

Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika@curoverse.com>

7 years ago11842: Remove chartjs.
Tom Clegg [Wed, 19 Jul 2017 13:43:39 +0000 (09:43 -0400)]
11842: Remove chartjs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11842: Use CDNJS for dygraphs js and css.
Tom Clegg [Wed, 19 Jul 2017 02:38:18 +0000 (22:38 -0400)]
11842: Use CDNJS for dygraphs js and css.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11842: Generate charts with dygraphs.
Tom Clegg [Tue, 18 Jul 2017 17:54:39 +0000 (13:54 -0400)]
11842: Generate charts with dygraphs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11842: Split generic webchart code from ChartJS to WebChart.
Tom Clegg [Tue, 18 Jul 2017 17:20:45 +0000 (13:20 -0400)]
11842: Split generic webchart code from ChartJS to WebChart.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agorefs #11906
radhika [Tue, 18 Jul 2017 19:27:02 +0000 (15:27 -0400)]
refs #11906

Merge branch '11906-api-ping'

Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika@curoverse.com>

7 years ago11906: healthcheck ping json updated
radhika [Tue, 18 Jul 2017 19:18:36 +0000 (15:18 -0400)]
11906: healthcheck ping json updated

Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika@curoverse.com>

7 years agoMerge branch '11980-debian9'
Nico Cesar [Tue, 18 Jul 2017 19:08:37 +0000 (15:08 -0400)]
Merge branch '11980-debian9'

refs #11980

Arvados-DCO-1.1-Signed-off-by: Nicolas Cesar <nico@curoverse.com>

7 years ago11980: debian9 packaging plus llfuse >= 1.2
Nico Cesar [Tue, 18 Jul 2017 13:21:43 +0000 (09:21 -0400)]
11980: debian9 packaging plus llfuse >= 1.2

Debian Stretch is not stable so we'll be packaging for it,
llfuse >= 1.2 is required for  this distro but also we need
to move into llfuse 1.2 so we can solve #10805

refs #11980
refs #10805

Arvados-DCO-1.1-Signed-off-by: Nicolas Cesar <nico@curoverse.com>

7 years agorefs #11906
radhika [Tue, 18 Jul 2017 17:48:40 +0000 (13:48 -0400)]
refs #11906

Merge branch '11906-api-ping'

Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika@curoverse.com>

7 years ago11906: add _health/.* to errors_test routes
radhika [Tue, 18 Jul 2017 17:30:53 +0000 (13:30 -0400)]
11906: add _health/.* to errors_test routes

Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika@curoverse.com>

7 years ago11906: added api ping tests
radhika [Tue, 18 Jul 2017 15:21:16 +0000 (11:21 -0400)]
11906: added api ping tests

Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika@curoverse.com>

7 years agorefs #11906
radhika [Mon, 17 Jul 2017 20:47:33 +0000 (16:47 -0400)]
refs #11906

Merge branch '11906-keepstore-ping'

Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika@curoverse.com>

7 years ago11906: pass a func() to healthCheckDo from HealthCheckPingHandler
radhika [Mon, 17 Jul 2017 18:25:46 +0000 (14:25 -0400)]
11906: pass a func() to healthCheckDo from HealthCheckPingHandler

Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika@curoverse.com>

7 years ago11906: keepstore ping
radhika [Fri, 14 Jul 2017 19:47:11 +0000 (15:47 -0400)]
11906: keepstore ping

Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika@curoverse.com>

7 years ago11906: add _health/ping to api server
radhika [Mon, 17 Jul 2017 20:45:45 +0000 (16:45 -0400)]
11906: add _health/ping to api server

Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika@curoverse.com>

7 years agoMerge branch '5652-arvputget-silent-mode'
Lucas Di Pentima [Mon, 17 Jul 2017 17:50:01 +0000 (14:50 -0300)]
Merge branch '5652-arvputget-silent-mode'
Closes #5652

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@curoverse.com>

7 years agorefs #11682
radhika [Mon, 17 Jul 2017 17:32:29 +0000 (13:32 -0400)]
refs #11682

Merge branch '11682-fix-test'

Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika@curoverse.com>

7 years ago11682: add infinite scrolling to container_requests index page test.
radhika [Mon, 17 Jul 2017 17:30:54 +0000 (13:30 -0400)]
11682: add infinite scrolling to container_requests index page test.

Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika@curoverse.com>

7 years ago5652: Readability improvements.
Lucas Di Pentima [Mon, 17 Jul 2017 17:18:05 +0000 (14:18 -0300)]
5652: Readability improvements.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@curoverse.com>

7 years ago5652: Merge branch 'master' into 5652-arvputget-silent-mode
Lucas Di Pentima [Mon, 17 Jul 2017 17:05:48 +0000 (14:05 -0300)]
5652: Merge branch 'master' into 5652-arvputget-silent-mode

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@curoverse.com>

7 years agocloses #11682
radhika [Mon, 17 Jul 2017 15:52:58 +0000 (11:52 -0400)]
closes #11682

Merge branch '11682-delete-container-request'

Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika@curoverse.com>

7 years ago11682: when a container_request is being destroyed, update it's container's priority
radhika [Fri, 7 Jul 2017 00:46:24 +0000 (20:46 -0400)]
11682: when a container_request is being destroyed, update it's container's priority

Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika@curoverse.com>

7 years ago11973: Tweak fpm dependency spec.
Tom Clegg [Fri, 14 Jul 2017 22:17:47 +0000 (18:17 -0400)]
11973: Tweak fpm dependency spec.

refs #11973

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11973: Build avro 1.8.1 for ubuntu1604 and add to schema-salad deps.
Tom Clegg [Fri, 14 Jul 2017 18:38:48 +0000 (14:38 -0400)]
11973: Build avro 1.8.1 for ubuntu1604 and add to schema-salad deps.

refs #11973

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11973: Set DEBIAN_FRONTEND=noninteractive in pkg-build/test images.
Tom Clegg [Fri, 14 Jul 2017 17:58:43 +0000 (13:58 -0400)]
11973: Set DEBIAN_FRONTEND=noninteractive in pkg-build/test images.

Clean up some unnecessary inconsistencies in Dockerfiles.

refs #11973

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11973: Upgrade setuptools in package-builder images.
Tom Clegg [Fri, 14 Jul 2017 17:16:48 +0000 (13:16 -0400)]
11973: Upgrade setuptools in package-builder images.

Old versions of setuptools cannot build a schema-salad package.

refs #11973

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agoMerge branch '11960-trash-events'
Tom Clegg [Fri, 14 Jul 2017 14:51:54 +0000 (10:51 -0400)]
Merge branch '11960-trash-events'

closes #11960

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11960: Get the full list of old IDs up front in sendOldEvents.
Tom Clegg [Thu, 13 Jul 2017 21:59:22 +0000 (17:59 -0400)]
11960: Get the full list of old IDs up front in sendOldEvents.

This avoids keeping the "get list of log IDs" database query open
while each log row gets looked up, queued, permission-checked,
serialized, and sent over the wire to the client.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11960: Fix races in tests.
Tom Clegg [Thu, 13 Jul 2017 15:11:14 +0000 (11:11 -0400)]
11960: Fix races in tests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago5652: Added test that proves that arv-get doesn't write the progress
Lucas Di Pentima [Thu, 13 Jul 2017 21:44:35 +0000 (18:44 -0300)]
5652: Added test that proves that arv-get doesn't write the progress
when stderr is not a tty.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@curoverse.com>

7 years agoMerge branch '11968-ws-startup-crash'
Tom Clegg [Thu, 13 Jul 2017 19:33:53 +0000 (15:33 -0400)]
Merge branch '11968-ws-startup-crash'

closes #11968

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agoMerge branch '11948-cwl-conformance-fix'
Tom Clegg [Thu, 13 Jul 2017 19:33:39 +0000 (15:33 -0400)]
Merge branch '11948-cwl-conformance-fix'

refs #11948

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agoAdd Chen Chen to AUTHORS.
Ward Vandewege [Thu, 13 Jul 2017 19:03:56 +0000 (15:03 -0400)]
Add Chen Chen to AUTHORS.

refs #2411

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curoverse.com>

7 years ago11960: Test that "delete" permissions are not too permissive.
Tom Clegg [Thu, 13 Jul 2017 13:39:55 +0000 (09:39 -0400)]
11960: Test that "delete" permissions are not too permissive.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11960: Test trashed collection.
Tom Clegg [Thu, 13 Jul 2017 07:26:01 +0000 (03:26 -0400)]
11960: Test trashed collection.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11960: Fix events leaking between tests.
Tom Clegg [Thu, 13 Jul 2017 07:25:47 +0000 (03:25 -0400)]
11960: Fix events leaking between tests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11960: Test permission on "delete" event.
Tom Clegg [Thu, 13 Jul 2017 06:39:48 +0000 (02:39 -0400)]
11960: Test permission on "delete" event.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago5652: Code style fixes.
Lucas Di Pentima [Wed, 12 Jul 2017 23:27:48 +0000 (20:27 -0300)]
5652: Code style fixes.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@curoverse.com>

7 years ago5652: Added --silent argument to arv-put to make it produce no
Lucas Di Pentima [Wed, 12 Jul 2017 23:10:08 +0000 (20:10 -0300)]
5652: Added --silent argument to arv-put to make it produce no
output when running in normal conditions.
Added related tests.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@curoverse.com>

7 years agoRevert "Merge branch '11857-acr-default-crunch2'" (edf37e92f885ed4d5bcf587317cc9c6d90...
Tom Clegg [Wed, 12 Jul 2017 21:41:32 +0000 (17:41 -0400)]
Revert "Merge branch '11857-acr-default-crunch2'" (edf37e92f885ed4d5bcf587317cc9c6d90d8ece1)

refs #11857

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agoRevert "11965: Update help message to match new --api default."
Tom Clegg [Wed, 12 Jul 2017 21:39:47 +0000 (17:39 -0400)]
Revert "11965: Update help message to match new --api default."

refs #11965

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11968: Wait in DB() for a database connection if necessary.
Tom Clegg [Wed, 12 Jul 2017 17:43:37 +0000 (13:43 -0400)]
11968: Wait in DB() for a database connection if necessary.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11965: Update help message to match new --api default.
Tom Clegg [Wed, 12 Jul 2017 15:02:58 +0000 (11:02 -0400)]
11965: Update help message to match new --api default.

fixes #11965

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11960: Fix permission checking for "delete" events.
Tom Clegg [Wed, 12 Jul 2017 14:58:48 +0000 (10:58 -0400)]
11960: Fix permission checking for "delete" events.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11960: Fix permission checking for events on trashed collections.
Tom Clegg [Wed, 12 Jul 2017 14:57:49 +0000 (10:57 -0400)]
11960: Fix permission checking for events on trashed collections.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11960: Include is_trashed in old/new attributes sent to client.
Tom Clegg [Wed, 12 Jul 2017 14:17:05 +0000 (10:17 -0400)]
11960: Include is_trashed in old/new attributes sent to client.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11948: if -> elif style fix
Peter Amstutz [Tue, 11 Jul 2017 22:06:43 +0000 (18:06 -0400)]
11948: if -> elif style fix

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curoverse.com>

7 years ago11948: Fix unit tests for additional file checking and nameroot/nameext fields.
Peter Amstutz [Tue, 11 Jul 2017 22:04:32 +0000 (18:04 -0400)]
11948: Fix unit tests for additional file checking and nameroot/nameext fields.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curoverse.com>

7 years ago11944: Ignore arv-put info on stderr.
Tom Clegg [Tue, 11 Jul 2017 21:31:20 +0000 (17:31 -0400)]
11944: Ignore arv-put info on stderr.

refs #11944

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11944: Turn off warnings while testing command line tool stderr.
Tom Clegg [Tue, 11 Jul 2017 20:42:45 +0000 (16:42 -0400)]
11944: Turn off warnings while testing command line tool stderr.

refs #11944

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11944: Remove invalid assertRaises(None, ...)
Tom Clegg [Tue, 11 Jul 2017 20:03:05 +0000 (16:03 -0400)]
11944: Remove invalid assertRaises(None, ...)

refs #11944

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11948: Strip out default values which reference unavailable files.
Peter Amstutz [Tue, 11 Jul 2017 16:40:05 +0000 (12:40 -0400)]
11948: Strip out default values which reference unavailable files.

Passes CWL conformance test "Test warning instead of error when default path is not found"

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curoverse.com>

7 years agoMerge branch '11950-stretch'
Tom Clegg [Mon, 10 Jul 2017 21:06:26 +0000 (17:06 -0400)]
Merge branch '11950-stretch'

refs #11950

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agorefs #11857
radhika [Mon, 10 Jul 2017 20:58:18 +0000 (16:58 -0400)]
refs #11857

Merge branch '11857-acr-default-crunch2'

Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika@curoverse.com>

7 years ago11950: Recognize new (2.11.0, debian9) git error messages.
Tom Clegg [Mon, 10 Jul 2017 18:28:46 +0000 (14:28 -0400)]
11950: Recognize new (2.11.0, debian9) git error messages.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agoMerge branch '11945-collection-cache-key'
Tom Clegg [Mon, 10 Jul 2017 20:21:14 +0000 (16:21 -0400)]
Merge branch '11945-collection-cache-key'

fixes #11945

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agoMerge branch '11917-dont-clear-cache'
Tom Clegg [Mon, 10 Jul 2017 20:19:19 +0000 (16:19 -0400)]
Merge branch '11917-dont-clear-cache'

refs #11917

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11857: arvados-cwl-runner defaults to crunch2 if available
radhika [Mon, 10 Jul 2017 18:13:12 +0000 (14:13 -0400)]
11857: arvados-cwl-runner defaults to crunch2 if available

Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika@curoverse.com>

7 years agoUpdate cwltool & schema-salad and fix for changes.
Peter Amstutz [Sat, 8 Jul 2017 20:01:08 +0000 (16:01 -0400)]
Update cwltool & schema-salad and fix for changes.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curoverse.com>

7 years ago11945: Key collection cache on pdh+token.
Tom Clegg [Fri, 7 Jul 2017 20:01:13 +0000 (16:01 -0400)]
11945: Key collection cache on pdh+token.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agoMerge branch '11945-disable-cache'
Tom Clegg [Fri, 7 Jul 2017 20:11:53 +0000 (16:11 -0400)]
Merge branch '11945-disable-cache'

refs #11945

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11945: Disable collection cache.
Tom Clegg [Fri, 7 Jul 2017 20:04:56 +0000 (16:04 -0400)]
11945: Disable collection cache.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agoarvados-cwl-runner always submits runner job when invoked with --no-wait refs #9086
Peter Amstutz [Fri, 7 Jul 2017 18:52:20 +0000 (14:52 -0400)]
arvados-cwl-runner always submits runner job when invoked with --no-wait refs #9086

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curoverse.com>

7 years agoMerge branch '10584-fuse-stop-threads' refs #10584
Peter Amstutz [Fri, 7 Jul 2017 15:27:07 +0000 (11:27 -0400)]
Merge branch '10584-fuse-stop-threads' refs #10584

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curoverse.com>

7 years agoMerge branch '11843-arpi-transient-error'
Tom Clegg [Fri, 7 Jul 2017 13:09:41 +0000 (09:09 -0400)]
Merge branch '11843-arpi-transient-error'

refs #11843

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago2411: Fix crunch-job license statement.
Tom Clegg [Wed, 5 Jul 2017 22:44:10 +0000 (18:44 -0400)]
2411: Fix crunch-job license statement.

crunch-job began as a copy of whjobmanager from the Free Factories
project.

refs #2411

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agoMerge branch '11927-tags-test'
Tom Clegg [Wed, 5 Jul 2017 21:38:42 +0000 (17:38 -0400)]
Merge branch '11927-tags-test'

refs #11927

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11927: Eliminate unnecessary use of selenium.
Tom Clegg [Wed, 5 Jul 2017 21:34:11 +0000 (17:34 -0400)]
11927: Eliminate unnecessary use of selenium.

This test case works without selenium, if we don't try to click an
"edit" link that's disabled because we already clicked it.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11927: Remove errant type attr from anchor element.
Tom Clegg [Wed, 5 Jul 2017 21:30:28 +0000 (17:30 -0400)]
11927: Remove errant type attr from anchor element.

Anchor elements do have a "type" attribute, but it specifies a MIME
type, not a data/control type like "button" as with input elements.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago10584: When evicting a Collection from the cache, ensure that get/put worker
Peter Amstutz [Fri, 30 Jun 2017 15:00:03 +0000 (11:00 -0400)]
10584: When evicting a Collection from the cache, ensure that get/put worker
threads are stopped.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curoverse.com>

7 years agoMerge branch '8624-fuse-tags' closes #8624
Peter Amstutz [Wed, 5 Jul 2017 18:54:55 +0000 (14:54 -0400)]
Merge branch '8624-fuse-tags' closes #8624

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curoverse.com>

7 years ago8624: Move check that tag exists from __contains__ to __getitem__ method.
Peter Amstutz [Wed, 5 Jul 2017 18:51:26 +0000 (14:51 -0400)]
8624: Move check that tag exists from __contains__ to __getitem__ method.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curoverse.com>

7 years agoMerge branch '8784-dir-listings'
Tom Clegg [Wed, 5 Jul 2017 15:39:13 +0000 (11:39 -0400)]
Merge branch '8784-dir-listings'

refs #8784

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11843: Do not fail pipelines on transient API failures.
Tom Clegg [Wed, 5 Jul 2017 15:33:36 +0000 (11:33 -0400)]
11843: Do not fail pipelines on transient API failures.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years ago11843: Improve formatting.
Tom Clegg [Wed, 5 Jul 2017 15:32:35 +0000 (11:32 -0400)]
11843: Improve formatting.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agoAdd missing copyright headers.
Tom Clegg [Wed, 5 Jul 2017 13:24:28 +0000 (09:24 -0400)]
Add missing copyright headers.

refs #2411

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agoUpdate .licenseignore.
Tom Clegg [Wed, 5 Jul 2017 13:23:49 +0000 (09:23 -0400)]
Update .licenseignore.

refs #2411

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agoFix regex usage.
Tom Clegg [Wed, 5 Jul 2017 13:21:53 +0000 (09:21 -0400)]
Fix regex usage.

refs #2411

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curoverse.com>

7 years agoAdd AUTHORS, update COPYING and license file names.
Ward Vandewege [Wed, 5 Jul 2017 08:06:56 +0000 (04:06 -0400)]
Add AUTHORS, update COPYING and license file names.

refs #2411

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curoverse.com>