arvados.git
5 years ago14965: Fixes the create operation encoding
Eric Biagiotti [Wed, 26 Jun 2019 20:02:39 +0000 (16:02 -0400)]
14965: Fixes the create operation encoding

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

5 years agoMerge remote-tracking branch 'origin/master' into 14965-arv-mount-py-three
Eric Biagiotti [Wed, 26 Jun 2019 15:39:04 +0000 (11:39 -0400)]
Merge remote-tracking branch 'origin/master' into 14965-arv-mount-py-three

refs #14965

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14965: Fixes read operation encoding
Eric Biagiotti [Wed, 26 Jun 2019 15:38:48 +0000 (11:38 -0400)]
14965: Fixes read operation encoding

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years agoMerge branch '15396-trgm-docs'
Eric Biagiotti [Tue, 25 Jun 2019 18:44:31 +0000 (14:44 -0400)]
Merge branch '15396-trgm-docs'

Refs #15396

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years agoMerge branch '14874-post-merge-fixes'
Lucas Di Pentima [Tue, 25 Jun 2019 18:30:41 +0000 (15:30 -0300)]
Merge branch '14874-post-merge-fixes'
Refs #14874

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14874: Fixed missing config sync.
Lucas Di Pentima [Tue, 25 Jun 2019 17:46:50 +0000 (14:46 -0300)]
14874: Fixed missing config sync.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14874: Capitalizes managed properties keys, updates documentation.
Lucas Di Pentima [Tue, 25 Jun 2019 17:08:01 +0000 (14:08 -0300)]
14874: Capitalizes managed properties keys, updates documentation.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14874: Adds Collections.ManagedProperties to Go SDK.
Lucas Di Pentima [Tue, 25 Jun 2019 16:20:24 +0000 (13:20 -0300)]
14874: Adds Collections.ManagedProperties to Go SDK.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago15396: Improves trgm update and installation docs
Eric Biagiotti [Tue, 25 Jun 2019 15:42:44 +0000 (11:42 -0400)]
15396: Improves trgm update and installation docs

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years agoMerge branch '14874-protected-collection-properties'
Lucas Di Pentima [Tue, 25 Jun 2019 14:29:13 +0000 (11:29 -0300)]
Merge branch '14874-protected-collection-properties'
Closes #14874

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '15345-kill-container-api'
Tom Clegg [Mon, 24 Jun 2019 22:55:55 +0000 (18:55 -0400)]
Merge branch '15345-kill-container-api'

closes #15345

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14965: Fixes subprocess.check_output parsing
Eric Biagiotti [Mon, 24 Jun 2019 18:18:53 +0000 (14:18 -0400)]
14965: Fixes subprocess.check_output parsing

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14965: Fix for inflexible llfuse function parameter
Eric Biagiotti [Mon, 24 Jun 2019 15:34:18 +0000 (11:34 -0400)]
14965: Fix for inflexible llfuse function parameter

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

llfuse.init expects the native str type in bother python 2 and 3, so the builtins.str type cannot be used.

5 years ago15345: Merge branch 'master' into 15345-kill-container-api
Tom Clegg [Mon, 24 Jun 2019 15:25:49 +0000 (11:25 -0400)]
15345: Merge branch 'master' into 15345-kill-container-api

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch 'master' into 14874-protected-collection-properties
Lucas Di Pentima [Mon, 24 Jun 2019 13:22:52 +0000 (10:22 -0300)]
Merge branch 'master' into 14874-protected-collection-properties

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14874: Simplifies example scripts and expands documentation.
Lucas Di Pentima [Fri, 21 Jun 2019 22:14:51 +0000 (19:14 -0300)]
14874: Simplifies example scripts and expands documentation.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '15340-error-counters'
Tom Clegg [Fri, 21 Jun 2019 20:37:46 +0000 (16:37 -0400)]
Merge branch '15340-error-counters'

refs #15340

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15340: Fix uncounted Destroy ops.
Tom Clegg [Fri, 21 Jun 2019 20:12:56 +0000 (16:12 -0400)]
15340: Fix uncounted Destroy ops.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14874: Adds admin script examples on documentation.
Lucas Di Pentima [Fri, 21 Jun 2019 15:34:39 +0000 (12:34 -0300)]
14874: Adds admin script examples on documentation.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14865: Fixes test mount type test
Eric Biagiotti [Thu, 20 Jun 2019 19:35:25 +0000 (15:35 -0400)]
14865: Fixes test mount type test

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14874: Renames DefaultProperties to ManagedProperties. Fixes documentation.
Lucas Di Pentima [Wed, 19 Jun 2019 20:28:44 +0000 (17:28 -0300)]
14874: Renames DefaultProperties to ManagedProperties. Fixes documentation.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoKeep relative URL when switching between versions in our documentation.
Ward Vandewege [Wed, 19 Jun 2019 19:02:10 +0000 (15:02 -0400)]
Keep relative URL when switching between versions in our documentation.

refs #15138

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years agoMerge branch '15296-cwl-cancel-procs' closes #15296
Peter Amstutz [Wed, 19 Jun 2019 18:07:35 +0000 (14:07 -0400)]
Merge branch '15296-cwl-cancel-procs' closes #15296

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '15295-keep-ref-check' closes #15295
Peter Amstutz [Wed, 19 Jun 2019 16:59:36 +0000 (12:59 -0400)]
Merge branch '15295-keep-ref-check' closes #15295

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoTidy up error checks in govendor test.
Tom Clegg [Tue, 18 Jun 2019 20:37:46 +0000 (16:37 -0400)]
Tidy up error checks in govendor test.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoCheck for up-to-date govendor as a test rather than a setup task.
Tom Clegg [Tue, 18 Jun 2019 20:03:37 +0000 (16:03 -0400)]
Check for up-to-date govendor as a test rather than a setup task.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15345: Add .../containers/kill management API to dispatcher.
Tom Clegg [Tue, 18 Jun 2019 19:25:20 +0000 (15:25 -0400)]
15345: Add .../containers/kill management API to dispatcher.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15296: Shutdown cancels processes unless running inside a container
Peter Amstutz [Tue, 18 Jun 2019 17:28:40 +0000 (13:28 -0400)]
15296: Shutdown cancels processes unless running inside a container

Suppress errors in cancel request (such as a double-cancel race).

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14874: Adds protected properties error handling to wb's tag editor.
Lucas Di Pentima [Tue, 18 Jun 2019 14:29:10 +0000 (11:29 -0300)]
14874: Adds protected properties error handling to wb's tag editor.

The tag editor notifies the user which tags are protected and restores their
state in the editor so they can be saved.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '15106-trgm-text-search'
Eric Biagiotti [Tue, 18 Jun 2019 14:06:43 +0000 (10:06 -0400)]
Merge branch '15106-trgm-text-search'

refs #15106

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago15295: Updates fuse code with futurize stage2 and fixes tests
Eric Biagiotti [Mon, 17 Jun 2019 21:34:16 +0000 (17:34 -0400)]
15295: Updates fuse code with futurize stage2 and fixes tests

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago15295: Fix test
Peter Amstutz [Mon, 17 Jun 2019 21:08:50 +0000 (17:08 -0400)]
15295: Fix test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15295: Make "lock by different token" a PermissionDeniedError
Peter Amstutz [Mon, 17 Jun 2019 19:56:16 +0000 (15:56 -0400)]
15295: Make "lock by different token" a PermissionDeniedError

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14965: Updates fuse code with futurize stage1
Eric Biagiotti [Mon, 17 Jun 2019 19:14:35 +0000 (15:14 -0400)]
14965: Updates fuse code with futurize stage1

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago15295: Check that keep references are well formed
Peter Amstutz [Mon, 17 Jun 2019 19:08:53 +0000 (15:08 -0400)]
15295: Check that keep references are well formed

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15106: Adds trigram support for "like" queries
Eric Biagiotti [Mon, 17 Jun 2019 18:58:17 +0000 (14:58 -0400)]
15106: Adds trigram support for "like" queries

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago15295: Fix updating and checking lock_count when updating state
Peter Amstutz [Mon, 17 Jun 2019 18:28:53 +0000 (14:28 -0400)]
15295: Fix updating and checking lock_count when updating state

Previously lock_count was only updated on explicit lock or unlock
calls.  Now updates to state will correctly update or check
lock_count.

Also tweak row locking for containers, remove redudant reload, also
make sure lock and unlock take a lock.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14965: Updates fuse tests with futurize stage2
Eric Biagiotti [Mon, 17 Jun 2019 17:44:08 +0000 (13:44 -0400)]
14965: Updates fuse tests with futurize stage2

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years agoMerge branch '15087-wb-queued-containers' closes #15087
Peter Amstutz [Mon, 17 Jun 2019 15:20:15 +0000 (11:20 -0400)]
Merge branch '15087-wb-queued-containers' closes #15087

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15106: Fixes arvbox to update an existing arvados user to superuser
Eric Biagiotti [Mon, 17 Jun 2019 15:19:57 +0000 (11:19 -0400)]
15106: Fixes arvbox to update an existing arvados user to superuser

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14965: Updates fuse tests with futurize stage1
Eric Biagiotti [Fri, 14 Jun 2019 21:04:32 +0000 (17:04 -0400)]
14965: Updates fuse tests with futurize stage1

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago"arvbox run test" is --interactive if not run with any other arguments.
Peter Amstutz [Mon, 17 Jun 2019 14:53:56 +0000 (10:53 -0400)]
"arvbox run test" is --interactive if not run with any other arguments.

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '15340-error-counters'
Tom Clegg [Mon, 17 Jun 2019 13:53:25 +0000 (09:53 -0400)]
Merge branch '15340-error-counters'

closes #15340

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15087: Add links to the oldest/longest running container
Peter Amstutz [Mon, 17 Jun 2019 13:37:05 +0000 (09:37 -0400)]
15087: Add links to the oldest/longest running container

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15340: Skip metrics update when running tests with no registry.
Tom Clegg [Fri, 14 Jun 2019 20:52:36 +0000 (16:52 -0400)]
15340: Skip metrics update when running tests with no registry.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14874: Shows errors when trying to update properties on wb1 tag editor.
Lucas Di Pentima [Fri, 14 Jun 2019 20:51:22 +0000 (17:51 -0300)]
14874: Shows errors when trying to update properties on wb1 tag editor.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago15340: Add metrics for cloud ops/errors and instance disappearances.
Tom Clegg [Fri, 14 Jun 2019 19:27:30 +0000 (15:27 -0400)]
15340: Add metrics for cloud ops/errors and instance disappearances.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14874: Fixes issue with keys being loaded as symbols from application.yml
Lucas Di Pentima [Fri, 14 Jun 2019 19:10:42 +0000 (16:10 -0300)]
14874: Fixes issue with keys being loaded as symbols from application.yml

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14874: Adds admin documentation, grouping it with collection versioning.
Lucas Di Pentima [Fri, 14 Jun 2019 19:05:21 +0000 (16:05 -0300)]
14874: Adds admin documentation, grouping it with collection versioning.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago15087: Fix tests.
Peter Amstutz [Fri, 14 Jun 2019 18:40:17 +0000 (14:40 -0400)]
15087: Fix tests.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '15000-config-api'
Tom Clegg [Fri, 14 Jun 2019 18:28:49 +0000 (14:28 -0400)]
Merge branch '15000-config-api'

refs #15000

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15000: Recommend checking config publication errors during install.
Tom Clegg [Fri, 14 Jun 2019 18:21:18 +0000 (14:21 -0400)]
15000: Recommend checking config publication errors during install.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15106: Updates install and upgrade docs to include trgm prerequisites
Eric Biagiotti [Fri, 14 Jun 2019 17:59:24 +0000 (13:59 -0400)]
15106: Updates install and upgrade docs to include trgm prerequisites

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years agoMerge branch '15368-python-deps' closes #15368
Peter Amstutz [Fri, 14 Jun 2019 17:35:51 +0000 (13:35 -0400)]
Merge branch '15368-python-deps' closes #15368

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15368: Don't require git to install arvados-python-client
Peter Amstutz [Fri, 14 Jun 2019 17:10:57 +0000 (13:10 -0400)]
15368: Don't require git to install arvados-python-client

It was catching CalledProcessError but if git is not installed the
error is actually OSError.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15368: Change doc references from "arv keep put/get" to "arv-put/get"
Peter Amstutz [Fri, 14 Jun 2019 17:07:17 +0000 (13:07 -0400)]
15368: Change doc references from "arv keep put/get" to "arv-put/get"

Since the "arv" frontend just adds overhead and requires installing
both ruby and python SDK instead of just the python sdk.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15368: Add note about debian dependencies for installing from pip
Peter Amstutz [Fri, 14 Jun 2019 17:06:08 +0000 (13:06 -0400)]
15368: Add note about debian dependencies for installing from pip

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15295: Needs locks_count
Peter Amstutz [Fri, 14 Jun 2019 15:09:13 +0000 (11:09 -0400)]
15295: Needs locks_count

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15087: Make container status a separate panel
Peter Amstutz [Fri, 14 Jun 2019 14:00:06 +0000 (10:00 -0400)]
15087: Make container status a separate panel

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15000: Update test.
Tom Clegg [Thu, 13 Jun 2019 21:03:50 +0000 (17:03 -0400)]
15000: Update test.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15087: Display pending/running containers and queue delay.
Peter Amstutz [Thu, 13 Jun 2019 20:39:27 +0000 (16:39 -0400)]
15087: Display pending/running containers and queue delay.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15000: Move exported config threshold to "needed by clients".
Tom Clegg [Thu, 13 Jun 2019 19:46:01 +0000 (15:46 -0400)]
15000: Move exported config threshold to "needed by clients".

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15000: Remove example image ID.
Tom Clegg [Thu, 13 Jun 2019 19:45:38 +0000 (15:45 -0400)]
15000: Remove example image ID.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch '15332-fed-demo' refs #15332
Peter Amstutz [Thu, 13 Jun 2019 19:14:46 +0000 (15:14 -0400)]
Merge branch '15332-fed-demo' refs #15332

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15332: Updated federation demo to do something a little more interesting.
Peter Amstutz [Mon, 10 Jun 2019 21:25:17 +0000 (17:25 -0400)]
15332: Updated federation demo to do something a little more interesting.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge remote-tracking branch 'origin/master' into 15106-trgm-text-search
Eric Biagiotti [Thu, 13 Jun 2019 17:22:37 +0000 (13:22 -0400)]
Merge remote-tracking branch 'origin/master' into 15106-trgm-text-search

refs #15106

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years agoMerge branch '15003-config-default-location'
Tom Clegg [Thu, 13 Jun 2019 14:25:35 +0000 (10:25 -0400)]
Merge branch '15003-config-default-location'

refs #15003

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15106: Arvbox update to be able to run the trgm migration
Eric Biagiotti [Thu, 13 Jun 2019 14:22:47 +0000 (10:22 -0400)]
15106: Arvbox update to be able to run the trgm migration

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago15000: Include bad value in error message.
Tom Clegg [Thu, 13 Jun 2019 13:32:02 +0000 (09:32 -0400)]
15000: Include bad value in error message.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15003: Load config from default location or -config arg, not stdin.
Tom Clegg [Wed, 12 Jun 2019 20:27:07 +0000 (16:27 -0400)]
15003: Load config from default location or -config arg, not stdin.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15106: Adds exception handling to the trgm migration
Eric Biagiotti [Wed, 12 Jun 2019 20:27:23 +0000 (16:27 -0400)]
15106: Adds exception handling to the trgm migration

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years agoMerge branch '15138-version-our-documentation'
Ward Vandewege [Wed, 12 Jun 2019 18:02:08 +0000 (14:02 -0400)]
Merge branch '15138-version-our-documentation'

refs #15138

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago15138: Include logic to support building multiple versions of our documentation.
Ward Vandewege [Tue, 11 Jun 2019 17:42:40 +0000 (13:42 -0400)]
15138: Include logic to support building multiple versions of our documentation.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years agoMerge branch 'master' into 14874-protected-collection-properties
Lucas Di Pentima [Tue, 11 Jun 2019 19:29:01 +0000 (16:29 -0300)]
Merge branch 'master' into 14874-protected-collection-properties

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '14930-arvput-trash-at'
Lucas Di Pentima [Tue, 11 Jun 2019 19:13:19 +0000 (16:13 -0300)]
Merge branch '14930-arvput-trash-at'
Closes #14930

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoTest setUp sets cwltool global names set used to ensure unique names
Peter Amstutz [Tue, 11 Jun 2019 18:08:26 +0000 (14:08 -0400)]
Test setUp sets cwltool global names set used to ensure unique names

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '15350-pysdk-cookbook-recipe'
Lucas Di Pentima [Tue, 11 Jun 2019 18:49:16 +0000 (15:49 -0300)]
Merge branch '15350-pysdk-cookbook-recipe'
Closes #15350

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago15350: Simplifies recipe code.
Lucas Di Pentima [Tue, 11 Jun 2019 18:32:15 +0000 (15:32 -0300)]
15350: Simplifies recipe code.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago15138: Show the TM notice a little bit higher.
Ward Vandewege [Mon, 10 Jun 2019 14:41:22 +0000 (10:41 -0400)]
15138: Show the TM notice a little bit higher.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago15350: Adds PySDK recipe to get a container request's state.
Lucas Di Pentima [Tue, 11 Jun 2019 16:55:34 +0000 (13:55 -0300)]
15350: Adds PySDK recipe to get a container request's state.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago15350: Fixes unnecessary api client instantiations on examples.
Lucas Di Pentima [Tue, 11 Jun 2019 16:49:16 +0000 (13:49 -0300)]
15350: Fixes unnecessary api client instantiations on examples.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14874: Fixes 'the the' typos on documentation & code comments.
Lucas Di Pentima [Tue, 11 Jun 2019 14:18:53 +0000 (11:18 -0300)]
14874: Fixes 'the the' typos on documentation & code comments.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch 'master' into 14874-protected-collection-properties
Lucas Di Pentima [Tue, 11 Jun 2019 13:31:49 +0000 (10:31 -0300)]
Merge branch 'master' into 14874-protected-collection-properties

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch 'master' into 14930-arvput-trash-at
Lucas Di Pentima [Mon, 10 Jun 2019 23:15:23 +0000 (20:15 -0300)]
Merge branch 'master' into 14930-arvput-trash-at

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14930: Don't ignore DST settings.
Lucas Di Pentima [Mon, 10 Jun 2019 22:44:47 +0000 (19:44 -0300)]
14930: Don't ignore DST settings.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoFix whitespace for gofmt 1.12.
Tom Clegg [Mon, 10 Jun 2019 20:12:51 +0000 (16:12 -0400)]
Fix whitespace for gofmt 1.12.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15106: Adds test to verify the trgm index exists on the correct columns
Eric Biagiotti [Mon, 10 Jun 2019 18:44:19 +0000 (14:44 -0400)]
15106: Adds test to verify the trgm index exists on the correct columns

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years agoMerge branch '15028-fix-tests' refs #15028
Peter Amstutz [Mon, 10 Jun 2019 18:10:36 +0000 (14:10 -0400)]
Merge branch '15028-fix-tests' refs #15028

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15028: Fix test
Peter Amstutz [Mon, 10 Jun 2019 18:09:56 +0000 (14:09 -0400)]
15028: Fix test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '14946-ruby-2.5'
Lucas Di Pentima [Mon, 10 Jun 2019 17:46:52 +0000 (14:46 -0300)]
Merge branch '14946-ruby-2.5'
Refs #14946

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch 'master' into 14946-ruby-2.5
Lucas Di Pentima [Mon, 10 Jun 2019 17:45:54 +0000 (14:45 -0300)]
Merge branch 'master' into 14946-ruby-2.5

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14874: Adds protected properties check for collection updates.
Lucas Di Pentima [Mon, 10 Jun 2019 17:44:22 +0000 (14:44 -0300)]
14874: Adds protected properties check for collection updates.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago15028: Make sure tests use a version that supports CWL v1.1
Peter Amstutz [Mon, 10 Jun 2019 15:37:12 +0000 (11:37 -0400)]
15028: Make sure tests use a version that supports CWL v1.1

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15106: Fix for trgm non-string operators
Eric Biagiotti [Mon, 10 Jun 2019 15:21:29 +0000 (11:21 -0400)]
15106: Fix for trgm non-string operators

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14874: Adds default properties behaviors at collection creation.
Lucas Di Pentima [Mon, 10 Jun 2019 14:17:57 +0000 (11:17 -0300)]
14874: Adds default properties behaviors at collection creation.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago15106: Adds trigram search to the api
Eric Biagiotti [Mon, 10 Jun 2019 14:09:27 +0000 (10:09 -0400)]
15106: Adds trigram search to the api

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years agoMerge branch 'master' into 15106-trgm-text-search
Eric Biagiotti [Mon, 10 Jun 2019 14:07:59 +0000 (10:07 -0400)]
Merge branch 'master' into 15106-trgm-text-search

refs #15106

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago15028: Bump cwltool version for bugfix.
Peter Amstutz [Fri, 7 Jun 2019 19:27:05 +0000 (15:27 -0400)]
15028: Bump cwltool version for bugfix.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMake debian9 the default target for our package building scripts.
Ward Vandewege [Fri, 7 Jun 2019 18:12:38 +0000 (14:12 -0400)]
Make debian9 the default target for our package building scripts.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago15000: Add Workbench configs.
Tom Clegg [Thu, 6 Jun 2019 21:08:23 +0000 (17:08 -0400)]
15000: Add Workbench configs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>