Tom Clegg [Wed, 17 Apr 2019 19:45:47 +0000 (15:45 -0400)]
15002: Fix container update permissions.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 17 Apr 2019 19:43:37 +0000 (15:43 -0400)]
Fix "failed" status leaking to subsequent attempt.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 17 Apr 2019 19:42:03 +0000 (15:42 -0400)]
Fix "failed" status leaking to subsequent attempt.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 12 Apr 2019 20:06:20 +0000 (16:06 -0400)]
Update arvbox documentation for devenv config, no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 12 Apr 2019 18:43:50 +0000 (14:43 -0400)]
Add gradle to arvbox, refs #14670
Also adds a new "devenv" config that starts a minimal container
environment with no services and $HOME bind mounted into the
container.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Thu, 11 Apr 2019 19:33:03 +0000 (15:33 -0400)]
Mention the credential expiry date option in the instructions to create Azure
credentials for Node Manager.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Mon, 8 Apr 2019 14:14:15 +0000 (11:14 -0300)]
Merge branch '14873-api-rails5-upgrade'
Closes #14873
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 8 Apr 2019 14:05:11 +0000 (11:05 -0300)]
14873: Fixes performance test.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Sat, 6 Apr 2019 15:24:53 +0000 (12:24 -0300)]
14873: Updates dependency on our themes_for_rails fork.
The newer version eliminates cwa couple of deprecation warnings.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Sat, 6 Apr 2019 14:29:08 +0000 (11:29 -0300)]
14873: Upgrades missing config settings.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 5 Apr 2019 13:16:37 +0000 (10:16 -0300)]
14873: Fixes typo on schema file.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 5 Apr 2019 12:59:26 +0000 (09:59 -0300)]
14873: Adjusts latest API Server changes to be rails5 worthy.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 5 Apr 2019 12:26:15 +0000 (09:26 -0300)]
Merge branch 'master' into 14873-api-rails5-upgrade
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 4 Apr 2019 22:25:11 +0000 (19:25 -0300)]
14873: Fixes permission benchmark test
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 4 Apr 2019 21:24:50 +0000 (18:24 -0300)]
14873: Changes perftest with benchmark because of unidentified errors.
Didn't want to dilate the migraton any longer because of this. If it's
critical we could investigate further.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Thu, 4 Apr 2019 20:44:19 +0000 (16:44 -0400)]
check-exist uses default python (oops) refs #15040
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 4 Apr 2019 19:11:55 +0000 (16:11 -0300)]
14873: Migrated functional tests to be integration tests.
Making more than 1 request on functional tests produces issues hard
to debug. Instead, those kind of tests should be done as integration tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Thu, 4 Apr 2019 15:13:04 +0000 (11:13 -0400)]
Run check-exist.py in Docker container refs #15040
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Thu, 4 Apr 2019 14:54:49 +0000 (10:54 -0400)]
Merge branch '14484-collection-record-update'
refs #14484
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Thu, 4 Apr 2019 14:41:27 +0000 (10:41 -0400)]
Pin networkx because 2.2 is the last version to support Python 2.7 and 3.4
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 4 Apr 2019 13:50:44 +0000 (10:50 -0300)]
14873: Modifies failing tests for debugging purposes.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Thu, 4 Apr 2019 13:44:07 +0000 (09:44 -0400)]
Fix stale cached container state after successful Cancel.
Avoids needless retries between a successful Cancel and the next sync.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 3 Apr 2019 21:11:25 +0000 (17:11 -0400)]
Merge branch '14796-dispatchcloud-install-docs'
refs #14796
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Wed, 3 Apr 2019 20:42:25 +0000 (16:42 -0400)]
Merge remote-tracking branch 'origin/master' into 14484-collection-record-update
refs #14484
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Wed, 3 Apr 2019 20:24:35 +0000 (16:24 -0400)]
14796: Tweak example boot probe command.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 3 Apr 2019 20:23:17 +0000 (16:23 -0400)]
14796: Add Amazon EC2 configuration example.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Wed, 3 Apr 2019 20:20:26 +0000 (16:20 -0400)]
14484: Adds test for updating a collection with file stats and manifest changes
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Wed, 3 Apr 2019 20:01:26 +0000 (16:01 -0400)]
14484: Improves test coverage and attribute setting performance
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Wed, 3 Apr 2019 15:39:47 +0000 (11:39 -0400)]
14796: Add arvados-dispatch-cloud (experimental) to install docs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 3 Apr 2019 00:45:30 +0000 (21:45 -0300)]
14873: Adds JSONB columns to discovery doc.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 2 Apr 2019 23:26:17 +0000 (20:26 -0300)]
14873: Removes byebug debug call on test.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 2 Apr 2019 22:13:25 +0000 (19:13 -0300)]
14873: Fixes JSON custom types.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 2 Apr 2019 21:36:08 +0000 (18:36 -0300)]
14873: Custom JSON attributes that default to [] or {} when nil.
Previously we used the 'serialize' call to declare a JSONB column as a Hash
or Array and this had the side effect to default to an empty hash or array
when assigning nil (whether was reading from the database or passed as a param).
JSONB columns shouldn't be now declared as serialized because Rails would serialize
their contents twice, but not declaring them makes us lose their side effect.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 2 Apr 2019 21:30:11 +0000 (18:30 -0300)]
14873: Fixes nested params behavior on controller tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 2 Apr 2019 18:37:07 +0000 (15:37 -0300)]
14873: Updates test for fix deprecation warning.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 2 Apr 2019 18:18:17 +0000 (14:18 -0400)]
Give up if test services don't come up.
refs #15044
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 2 Apr 2019 18:11:55 +0000 (14:11 -0400)]
Remove dependency on jq.
refs #15044
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 2 Apr 2019 17:28:10 +0000 (13:28 -0400)]
Merge branch '15044-test-fixes'
closes #15044
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 2 Apr 2019 17:24:45 +0000 (13:24 -0400)]
15044: Sanity-check test services when bringing them up.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Tue, 2 Apr 2019 16:23:44 +0000 (13:23 -0300)]
14873: Reverts previous fixture changes.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Eric Biagiotti [Tue, 2 Apr 2019 15:49:29 +0000 (11:49 -0400)]
14484: Update collection model to overwrite file stats if a change is attempted
Also updates tests and documentation
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Tue, 2 Apr 2019 14:20:45 +0000 (10:20 -0400)]
15044: Require newer mocha.
Without this, old dev environments will not necessarily support the
non-deprecated usage (require 'mocha/minitest').
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 1 Apr 2019 18:58:40 +0000 (14:58 -0400)]
Merge branch 'arvbox-cert-docs' no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Mon, 1 Apr 2019 18:49:42 +0000 (14:49 -0400)]
14844: Adds collections controller tests and updates collection model tests
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Mon, 1 Apr 2019 16:28:12 +0000 (12:28 -0400)]
Update arvbox docs to describe how to install root cert
Remove slurm from arvbox
Arvbox cluster ids now always start with 'x' to be consistent with
cluster identifier guidelines for "experimental/local-only/private clusters"
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Mon, 1 Apr 2019 15:37:33 +0000 (11:37 -0400)]
14484: Moves the file count and total size callback to after_validation
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Mon, 1 Apr 2019 15:16:58 +0000 (11:16 -0400)]
Merge branch '14758-keepproxy-panic'
fixes #14758
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 1 Apr 2019 14:40:43 +0000 (10:40 -0400)]
14758: Fix panic on error reading request body.
The deferred inline func panics if status != 200 && err == nil.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 1 Apr 2019 15:08:53 +0000 (11:08 -0400)]
Merge branch '15050-limit-cdl-containers' closes #15050
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Sun, 31 Mar 2019 19:25:11 +0000 (15:25 -0400)]
Add another nil check to Azure driver.
refs #15007
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 29 Mar 2019 20:27:04 +0000 (16:27 -0400)]
15050: After waking up, check if the container was cancelled
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 29 Mar 2019 19:22:44 +0000 (15:22 -0400)]
15044: Fix sensitivity to group existence on the testing host.
Also fix some ruby warnings.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Fri, 29 Mar 2019 19:08:36 +0000 (15:08 -0400)]
14484: Moves test for grouping pdhs to its own file
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Fri, 29 Mar 2019 18:46:30 +0000 (14:46 -0400)]
14484: Moves pdh grouping into a lib module
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Fri, 29 Mar 2019 18:28:01 +0000 (14:28 -0400)]
15050: Need to make sure to raise the semaphore when we're done
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 29 Mar 2019 18:06:22 +0000 (14:06 -0400)]
15050: Limit number of containers that crunch-dispatch-local runs at a time
So I can do some testing with submitting a huge number of containers
and not melt my machine.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Fri, 29 Mar 2019 17:54:28 +0000 (13:54 -0400)]
14484: Adds tests for Collection model and makes file attributes readonly
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Fri, 29 Mar 2019 17:36:51 +0000 (13:36 -0400)]
15044: Don't kill run-tests's keepproxy server in sdk/python tests.
This was causing an apps/workbench test
(CollectionUploadTest#test_Upload_non-empty_files) to fail when
running after sdk/python tests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 29 Mar 2019 15:44:51 +0000 (11:44 -0400)]
Fix assigning APIHost in NewClientFromConfig refs #15045
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 28 Mar 2019 20:21:26 +0000 (16:21 -0400)]
15044: Specify test database collation.
apps/workbench/test/controllers/projects_controller_test.rb:546 fails
with other collations.
Remove obsolete websocket comment.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 28 Mar 2019 20:01:28 +0000 (16:01 -0400)]
15044: Fix unnecessarily unsafe yaml load.
...and eliminate the associated warnings in test logs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 28 Mar 2019 19:58:10 +0000 (15:58 -0400)]
15044: Fix workbench test args in interactive mode.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 28 Mar 2019 18:58:10 +0000 (14:58 -0400)]
15044: Improve error reporting in test case.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 28 Mar 2019 17:27:52 +0000 (13:27 -0400)]
15044: Listen on localhost instead of default dual-stack [::].
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 28 Mar 2019 15:12:44 +0000 (11:12 -0400)]
15044: Test gofmt as a separate suite, instead of refusing to run Go tests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 28 Mar 2019 18:12:37 +0000 (14:12 -0400)]
15044: Always use the en_US.UTF-8 locale. Add sanity check.
Some tests are sensitive to charset and collation.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Thu, 28 Mar 2019 21:10:21 +0000 (18:10 -0300)]
14873: Removes debug data on fixture.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 28 Mar 2019 21:06:37 +0000 (18:06 -0300)]
14873: Fixes unit tests.
JSONB columns shouldn't be declared as 'serialized' because their content
get encoded twice.
When not declaring them as serialized, their default values (eg: [], {})
should be explicitly set.
Fixes on fixtures when default JSONB values are not defined on the schema.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 27 Mar 2019 18:20:05 +0000 (15:20 -0300)]
Merge branch 'master' into 14873-api-rails5-upgrade
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Thu, 28 Mar 2019 14:37:13 +0000 (10:37 -0400)]
15044: Fix error messages.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 27 Mar 2019 20:46:04 +0000 (16:46 -0400)]
15044: Fix interactive command handling.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 27 Mar 2019 20:42:25 +0000 (16:42 -0400)]
15044: Override unusable nginx defaults. Test nginx startup success.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 28 Mar 2019 17:44:05 +0000 (13:44 -0400)]
Merge branch '14998-hoststat-total'
fixes #14998
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 19 Mar 2019 19:49:49 +0000 (15:49 -0400)]
14998: Report total_* (hierarchy) stats if available.
Otherwise, host stats only include the root cgroup.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 28 Mar 2019 16:56:44 +0000 (12:56 -0400)]
prepare.py in fed tests uses default python refs #15040
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Thu, 28 Mar 2019 16:45:20 +0000 (12:45 -0400)]
14484: Updates collection documentation to include the new file stats
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 28 Mar 2019 14:44:42 +0000 (10:44 -0400)]
14484: Fixes performance test by changing file_size_total to bigint
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Thu, 28 Mar 2019 14:17:50 +0000 (10:17 -0400)]
run prepare.py in fed tests in docker container refs #15040
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Wed, 27 Mar 2019 21:28:31 +0000 (17:28 -0400)]
14484: Fixes tests that intentionally pass in invalid manifests
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Wed, 27 Mar 2019 20:56:47 +0000 (16:56 -0400)]
14484: Adds test for pdh grouping functionality in the container model
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Wed, 27 Mar 2019 20:35:14 +0000 (16:35 -0400)]
14484: Simplifies pdh transaction grouping, keeps SQL in the migration
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Wed, 27 Mar 2019 20:34:36 +0000 (16:34 -0400)]
run-tests.sh: don't prepopulate cmd if running in an emacs buffer.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Wed, 27 Mar 2019 20:04:05 +0000 (16:04 -0400)]
test mode creates certificate so that setting up SSO can succeed
also added "arvbox update"
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Wed, 27 Mar 2019 18:09:52 +0000 (15:09 -0300)]
14873: Adds headers to controller tests' requests.
API server logs used to report 'format: html' when running functional tests.
With these additions, it now reports 'json', but this is not enough to fix
the issue about nested arrays being flattened when running tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 27 Mar 2019 18:07:09 +0000 (15:07 -0300)]
14873: Gets rid of yet another deprecation warning.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 27 Mar 2019 18:02:11 +0000 (15:02 -0300)]
14873: Skips indexes which 'columns' attribute isn't an Array.
ActiveRecord::Base.connection.indexes(table) didn't seem to return these
previous to rails 5.0 upgrade.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Eric Biagiotti [Wed, 27 Mar 2019 17:50:26 +0000 (13:50 -0400)]
14484: Makes quotation marks consistent
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Wed, 27 Mar 2019 17:27:06 +0000 (13:27 -0400)]
14484: Updates the migration to use the sdk for manifest parsing
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Wed, 27 Mar 2019 15:15:15 +0000 (11:15 -0400)]
Accept :py3 modifier for any Python suite in interactive mode.
(even ones that aren't normally run with python3 by jenkins)
refs #14939
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 27 Mar 2019 02:41:10 +0000 (23:41 -0300)]
14873: Marks past migrations with version 4.2
Rails 5 migration API changes, so to be able to run past migrations
with newer rails, it's required to mark them.
This isn't documented on the Rails 5.0 upgrade notes, but it's mentioned on some
blogs, like this one:
https://blog.bigbinary.com/2016/03/01/migrations-are-versioned-in-rails-5.html
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 27 Mar 2019 01:38:43 +0000 (22:38 -0300)]
14873: Fixes parameter handling (WIP)
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Eric Biagiotti [Tue, 26 Mar 2019 21:02:56 +0000 (17:02 -0400)]
14484: Adds file count and size callback to the collection model
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Lucas Di Pentima [Tue, 26 Mar 2019 20:46:42 +0000 (17:46 -0300)]
14873: Fixes integration tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Fernando Monserrat [Tue, 26 Mar 2019 20:29:45 +0000 (17:29 -0300)]
no issue # Remove jessie-updates from sources.list as it is no longer supported
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat@veritasgenetics.com>
Peter Amstutz [Tue, 26 Mar 2019 20:09:31 +0000 (16:09 -0400)]
arvbox nginx redirects http to https
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Tue, 26 Mar 2019 18:50:18 +0000 (14:50 -0400)]
14484: Fixes grouping bug by simplifying nested pdhs arrays
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Lucas Di Pentima [Tue, 26 Mar 2019 18:33:15 +0000 (15:33 -0300)]
14873: Fixes deprecation warnings on integration tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Eric Biagiotti [Tue, 26 Mar 2019 17:56:10 +0000 (13:56 -0400)]
14484: Changes file token to match the one used in collection.rb model
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Tue, 26 Mar 2019 16:47:06 +0000 (12:47 -0400)]
14484: Adds migration for collection file count and total size
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Tue, 26 Mar 2019 16:46:15 +0000 (12:46 -0400)]
14484: Fixes bug in pdh transaction grouping
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
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