arvados.git
9 years agoMerge branch 'master' into 3193-manage-account
radhika [Wed, 30 Jul 2014 19:29:35 +0000 (15:29 -0400)]
Merge branch 'master' into 3193-manage-account

9 years ago3193: do not validate input submitted on client side
radhika [Wed, 30 Jul 2014 19:15:51 +0000 (15:15 -0400)]
3193: do not validate input submitted on client side

9 years agoWorkbench: make the Setup User screen less confusing by labelling the
Ward Vandewege [Wed, 30 Jul 2014 19:00:49 +0000 (21:00 +0200)]
Workbench: make the Setup User screen less confusing by labelling the
Repository Name and Shell Login field as such.

no issue #

9 years agoMerge branch 'master' into 3193-manage-account
radhika [Wed, 30 Jul 2014 18:59:18 +0000 (14:59 -0400)]
Merge branch 'master' into 3193-manage-account

9 years agoReport validation error messages in server log. refs #3415
Tom Clegg [Wed, 30 Jul 2014 14:35:09 +0000 (10:35 -0400)]
Report validation error messages in server log. refs #3415

9 years ago3193: update the ssh popup to not require name.
radhika [Wed, 30 Jul 2014 14:32:43 +0000 (10:32 -0400)]
3193: update the ssh popup to not require name.

9 years agoMerge branch 'master' into 3193-manage-account
radhika [Wed, 30 Jul 2014 14:03:04 +0000 (10:03 -0400)]
Merge branch 'master' into 3193-manage-account

9 years agoDocumentation fix: add a link to the Keep installation page in the left
Ward Vandewege [Tue, 29 Jul 2014 21:54:43 +0000 (23:54 +0200)]
Documentation fix: add a link to the Keep installation page in the left
nav bar under "Manual installation".

no issue #

9 years agoWhitespace fix in docker install documentation.
Ward Vandewege [Tue, 29 Jul 2014 21:48:38 +0000 (23:48 +0200)]
Whitespace fix in docker install documentation.

no issue #

9 years agoMerge branch '3219-further-docker-improvements'
Ward Vandewege [Tue, 29 Jul 2014 20:34:14 +0000 (22:34 +0200)]
Merge branch '3219-further-docker-improvements'

refs #3219

9 years agoMerge branch 'master' into 3219-further-docker-improvements
Ward Vandewege [Tue, 29 Jul 2014 20:32:56 +0000 (22:32 +0200)]
Merge branch 'master' into 3219-further-docker-improvements

9 years ago3193: improve virtual machines section to add a sample.
radhika [Tue, 29 Jul 2014 20:07:45 +0000 (16:07 -0400)]
3193: improve virtual machines section to add a sample.

9 years ago3193: split ssh section into two sections
radhika [Tue, 29 Jul 2014 19:31:44 +0000 (15:31 -0400)]
3193: split ssh section into two sections

9 years ago3193: show only a portion of the ssh key so that the page does not have to scroll...
radhika [Tue, 29 Jul 2014 19:15:01 +0000 (15:15 -0400)]
3193: show only a portion of the ssh key so that the page does not have to scroll too far down when there are multiple ssh keys configured.

9 years ago3193: minor text updates in the UI panels.
radhika [Tue, 29 Jul 2014 18:09:58 +0000 (14:09 -0400)]
3193: minor text updates in the UI panels.

9 years ago3193: add head_uuid is a arvados#repository filter when looking for recpositories.
radhika [Tue, 29 Jul 2014 17:44:13 +0000 (13:44 -0400)]
3193: add head_uuid is a arvados#repository filter when looking for recpositories.

9 years agoMerge branch 'master' into 3193-manage-account
radhika [Tue, 29 Jul 2014 17:29:56 +0000 (13:29 -0400)]
Merge branch 'master' into 3193-manage-account

9 years agoMerge branch '3351-keep-timeout' closes #3351
Tom Clegg [Tue, 29 Jul 2014 15:58:45 +0000 (11:58 -0400)]
Merge branch '3351-keep-timeout' closes #3351

9 years ago3351: Propagate caller-provided timeout from KeepClient to KeepWriterThread.
Tom Clegg [Tue, 29 Jul 2014 14:35:26 +0000 (10:35 -0400)]
3351: Propagate caller-provided timeout from KeepClient to KeepWriterThread.

Also, use the timeout in the sign_for_old_server block (even though
this branch is unlikely to be used in real life now that the old Keep
server has been replaced).

9 years agoMerge branch 'master' into 3193-manage-account
radhika [Tue, 29 Jul 2014 14:14:18 +0000 (10:14 -0400)]
Merge branch 'master' into 3193-manage-account

9 years ago3235: Fix attribute keys. refs #3235
Tom Clegg [Tue, 29 Jul 2014 14:00:03 +0000 (10:00 -0400)]
3235: Fix attribute keys. refs #3235

9 years agoMerge branch '3235-top-nav-site-search' refs #3235
Tom Clegg [Tue, 29 Jul 2014 02:50:37 +0000 (22:50 -0400)]
Merge branch '3235-top-nav-site-search' refs #3235

9 years agoDo not show non-project groups in groups directory. no issue #
Tom Clegg [Tue, 29 Jul 2014 01:18:40 +0000 (21:18 -0400)]
Do not show non-project groups in groups directory. no issue #

9 years agoFix TypeError: Got an unexpected keyword argument "uuid". refs #3235
Tom Clegg [Tue, 29 Jul 2014 01:14:33 +0000 (21:14 -0400)]
Fix TypeError: Got an unexpected keyword argument "uuid". refs #3235

9 years ago3235: Fix hover highlighting on projects dropdowns.
Tom Clegg [Tue, 29 Jul 2014 00:30:10 +0000 (20:30 -0400)]
3235: Fix hover highlighting on projects dropdowns.

9 years ago3235: Show selected project in project-filter dropdown title.
Tom Clegg [Tue, 29 Jul 2014 00:12:42 +0000 (20:12 -0400)]
3235: Show selected project in project-filter dropdown title.

9 years agoDo not return non-project groups in groups#contents. refs #3235
Tom Clegg [Mon, 28 Jul 2014 23:23:04 +0000 (19:23 -0400)]
Do not return non-project groups in groups#contents. refs #3235

9 years agoMerge branch 'master' into 3219-further-docker-improvements
Ward Vandewege [Mon, 28 Jul 2014 22:46:15 +0000 (00:46 +0200)]
Merge branch 'master' into 3219-further-docker-improvements

9 years agoFix the auto_admin_user feature; it was broken by accident in
Ward Vandewege [Mon, 28 Jul 2014 22:43:14 +0000 (00:43 +0200)]
Fix the auto_admin_user feature; it was broken by accident in
commit:5f651773

refs #3219

9 years ago3235: Fix infinite scroll broken by merge.
Tom Clegg [Mon, 28 Jul 2014 21:52:51 +0000 (17:52 -0400)]
3235: Fix infinite scroll broken by merge.

9 years ago3235: Move filter-by-project to left side.
Tom Clegg [Mon, 28 Jul 2014 21:20:38 +0000 (17:20 -0400)]
3235: Move filter-by-project to left side.

9 years ago3235: Merge branch 'master' into 3235-top-nav-site-search
Tom Clegg [Mon, 28 Jul 2014 21:12:52 +0000 (17:12 -0400)]
3235: Merge branch 'master' into 3235-top-nav-site-search

Conflicts:
apps/workbench/app/views/layouts/application.html.erb

9 years agoMerge branch '3235-all-contents' refs #3235
Tom Clegg [Mon, 28 Jul 2014 21:10:16 +0000 (17:10 -0400)]
Merge branch '3235-all-contents' refs #3235

9 years ago3235: Add test case.
Tom Clegg [Fri, 25 Jul 2014 17:49:27 +0000 (13:49 -0400)]
3235: Add test case.

9 years ago3235: Fix SQL query.
Tom Clegg [Fri, 25 Jul 2014 02:10:30 +0000 (22:10 -0400)]
3235: Fix SQL query.

9 years ago3235: Split GroupsController#contents logic out to load_searchable_objects.
Tom Clegg [Thu, 24 Jul 2014 23:03:35 +0000 (19:03 -0400)]
3235: Split GroupsController#contents logic out to load_searchable_objects.

9 years ago3235: Remove errant action exemption.
Tom Clegg [Mon, 28 Jul 2014 19:56:41 +0000 (15:56 -0400)]
3235: Remove errant action exemption.

9 years ago3235: Merge branch 'master' into 3235-top-nav-site-search
Tom Clegg [Mon, 28 Jul 2014 19:45:23 +0000 (15:45 -0400)]
3235: Merge branch 'master' into 3235-top-nav-site-search

Conflicts:
apps/workbench/app/assets/javascripts/infinite_scroll.js
apps/workbench/app/views/application/_choose.html.erb
apps/workbench/app/views/layouts/application.html.erb

9 years agoSet $CRUNCH_SRC correctly when running the Docker container. refs #3370
Peter Amstutz [Mon, 28 Jul 2014 13:13:59 +0000 (09:13 -0400)]
Set $CRUNCH_SRC correctly when running the Docker container.  refs #3370

9 years ago3235: Bind Esc key to close modals.
Tom Clegg [Sun, 27 Jul 2014 22:35:46 +0000 (18:35 -0400)]
3235: Bind Esc key to close modals.

9 years ago3235: Focus search box when chooser modal appears.
Tom Clegg [Sun, 27 Jul 2014 22:28:18 +0000 (18:28 -0400)]
3235: Focus search box when chooser modal appears.

9 years ago3235: Show project filter by default (i.e., unless by_project=false).
Tom Clegg [Sun, 27 Jul 2014 22:22:53 +0000 (18:22 -0400)]
3235: Show project filter by default (i.e., unless by_project=false).

9 years ago3235: Fix "no filter / all projects" option.
Tom Clegg [Sun, 27 Jul 2014 22:03:13 +0000 (18:03 -0400)]
3235: Fix "no filter / all projects" option.

9 years ago3235: Fix multiple-select.
Tom Clegg [Sun, 27 Jul 2014 21:58:17 +0000 (17:58 -0400)]
3235: Fix multiple-select.

9 years ago3235: Make filter-by-project play nice with infinite scroll.
Tom Clegg [Sun, 27 Jul 2014 21:48:28 +0000 (17:48 -0400)]
3235: Make filter-by-project play nice with infinite scroll.

9 years ago3235: Hide section header rows for empty sections. closes #3377
Tom Clegg [Sun, 27 Jul 2014 19:34:31 +0000 (15:34 -0400)]
3235: Hide section header rows for empty sections. closes #3377

9 years ago3235: Fix infinite scroll in Search chooser.
Tom Clegg [Sun, 27 Jul 2014 19:22:38 +0000 (15:22 -0400)]
3235: Fix infinite scroll in Search chooser.

9 years ago3235: Infinite scroll error handling: Show error message and "Retry" button
Tom Clegg [Sun, 27 Jul 2014 19:19:49 +0000 (15:19 -0400)]
3235: Infinite scroll error handling: Show error message and "Retry" button
instead of immediately repeating the failed request ad infinitum.

9 years ago3235: Skip data-remote links in smoke test. They might not know format=html.
Tom Clegg [Sat, 26 Jul 2014 21:23:42 +0000 (17:23 -0400)]
3235: Skip data-remote links in smoke test. They might not know format=html.

9 years ago3235: Show multiple object types in top-nav Search modal.
Tom Clegg [Sat, 26 Jul 2014 21:08:45 +0000 (17:08 -0400)]
3235: Show multiple object types in top-nav Search modal.

9 years ago3351: Fix CollectionReader usage in arv-ls.
Tom Clegg [Sat, 26 Jul 2014 18:53:17 +0000 (14:53 -0400)]
3351: Fix CollectionReader usage in arv-ls.

9 years ago3351: Add comment about SSL timeouts.
Tom Clegg [Sat, 26 Jul 2014 18:51:19 +0000 (14:51 -0400)]
3351: Add comment about SSL timeouts.

9 years ago3351: Clean up some excess indentation.
Tom Clegg [Sat, 26 Jul 2014 18:49:02 +0000 (14:49 -0400)]
3351: Clean up some excess indentation.

9 years ago3351: Catch SSLError and show warning instead of stack trace.
Tom Clegg [Sat, 26 Jul 2014 18:48:13 +0000 (14:48 -0400)]
3351: Catch SSLError and show warning instead of stack trace.

9 years ago3351: Retry failed threads (servers) if replication is too low after one pass.
Tom Clegg [Sat, 26 Jul 2014 18:17:43 +0000 (14:17 -0400)]
3351: Retry failed threads (servers) if replication is too low after one pass.

9 years agoMerge branch 'master' into 3193-manage-account
radhika [Sat, 26 Jul 2014 17:14:01 +0000 (13:14 -0400)]
Merge branch 'master' into 3193-manage-account

Conflicts:
apps/workbench/app/views/layouts/application.html.erb

9 years agorefs #3138
radhika [Sat, 26 Jul 2014 01:34:42 +0000 (21:34 -0400)]
refs #3138
Merge branch '3138-wiselinks'

9 years ago3138: test passing as is
radhika [Sat, 26 Jul 2014 01:33:50 +0000 (21:33 -0400)]
3138: test passing as is

9 years agoMerge branch 'master' into 3138-wiselinks
radhika [Sat, 26 Jul 2014 01:24:04 +0000 (21:24 -0400)]
Merge branch 'master' into 3138-wiselinks

Conflicts:
apps/workbench/app/views/layouts/application.html.erb

9 years ago3351: Improve "already uploading" message (and send to stderr, not stdout).
Tom Clegg [Fri, 25 Jul 2014 22:42:18 +0000 (18:42 -0400)]
3351: Improve "already uploading" message (and send to stderr, not stdout).

9 years ago3351: Do not use resume cache at all if --no-resume flag is given.
Tom Clegg [Fri, 25 Jul 2014 22:36:38 +0000 (18:36 -0400)]
3351: Do not use resume cache at all if --no-resume flag is given.

9 years agoMerge branch 'master' into 3138-wiselinks
radhika [Fri, 25 Jul 2014 21:56:51 +0000 (17:56 -0400)]
Merge branch 'master' into 3138-wiselinks

9 years ago3138: When wiselinks is initialized, selection.js does not work. Since we want to...
radhika [Fri, 25 Jul 2014 21:55:41 +0000 (17:55 -0400)]
3138: When wiselinks is initialized, selection.js does not work. Since we want to stop using selection.js in the near future, let's not initialize wiselinks object for now.

9 years ago3351: Set PUT request timeout to 60 seconds.
Tom Clegg [Fri, 25 Jul 2014 21:42:43 +0000 (17:42 -0400)]
3351: Set PUT request timeout to 60 seconds.

9 years agoMerge branch '3286-home-button' closes #3286
Tom Clegg [Fri, 25 Jul 2014 20:22:54 +0000 (16:22 -0400)]
Merge branch '3286-home-button' closes #3286

9 years ago3286: Split Home/Projects thing into Home button and Projects dropdown.
Tom Clegg [Fri, 25 Jul 2014 19:26:31 +0000 (15:26 -0400)]
3286: Split Home/Projects thing into Home button and Projects dropdown.

9 years ago3193: Show name column in the ssh key section.
radhika [Fri, 25 Jul 2014 18:11:17 +0000 (14:11 -0400)]
3193: Show name column in the ssh key section.

9 years agoDo not remove /dev/stdout on interrupt signal. No issue #
Tom Clegg [Fri, 25 Jul 2014 17:51:51 +0000 (13:51 -0400)]
Do not remove /dev/stdout on interrupt signal. No issue #

9 years ago3235: Add test case.
Tom Clegg [Fri, 25 Jul 2014 17:49:27 +0000 (13:49 -0400)]
3235: Add test case.

9 years ago3193: disable submit button in popup if either name or public key are empty.
radhika [Fri, 25 Jul 2014 17:39:06 +0000 (13:39 -0400)]
3193: disable submit button in popup if either name or public key are empty.

9 years ago3193: add note if there are no ssh keys configured
radhika [Fri, 25 Jul 2014 15:44:01 +0000 (11:44 -0400)]
3193: add note if there are no ssh keys configured

9 years ago3193: Move "SSH keys" and "API tokens" from notifications menu into settings gear...
radhika [Fri, 25 Jul 2014 15:13:29 +0000 (11:13 -0400)]
3193: Move "SSH keys" and "API tokens" from notifications menu into settings gear menu. These are now available only for admin users.

9 years agoMerge branch 'master' into 3193-manage-account
radhika [Fri, 25 Jul 2014 14:51:32 +0000 (10:51 -0400)]
Merge branch 'master' into 3193-manage-account

9 years ago3193: add ssh key using popup
radhika [Fri, 25 Jul 2014 14:51:02 +0000 (10:51 -0400)]
3193: add ssh key using popup

9 years agoMerge branch 'staging'
Brett Smith [Fri, 25 Jul 2014 12:04:33 +0000 (08:04 -0400)]
Merge branch 'staging'

Closes #3315.  Thanks Guillermo!

9 years agoCreate temporary directory if it does not exist
Guillermo Carrasco [Wed, 9 Jul 2014 19:02:27 +0000 (15:02 -0400)]
Create temporary directory if it does not exist

9 years ago3235: Fix SQL query.
Tom Clegg [Fri, 25 Jul 2014 02:10:30 +0000 (22:10 -0400)]
3235: Fix SQL query.

9 years ago3235: Split GroupsController#contents logic out to load_searchable_objects.
Tom Clegg [Thu, 24 Jul 2014 23:03:35 +0000 (19:03 -0400)]
3235: Split GroupsController#contents logic out to load_searchable_objects.

9 years ago3321: Workbench copes when pipeline components have an odd form.
Brett Smith [Thu, 24 Jul 2014 20:18:35 +0000 (16:18 -0400)]
3321: Workbench copes when pipeline components have an odd form.

Closes #3321.

9 years ago3193: add wrapping to td elements
radhika [Thu, 24 Jul 2014 17:17:37 +0000 (13:17 -0400)]
3193: add wrapping to td elements

9 years agoAdd Keep install instructions (manual).
Ward Vandewege [Thu, 24 Jul 2014 16:58:43 +0000 (12:58 -0400)]
Add Keep install instructions (manual).

no issue #

9 years ago3193: updated the vm section based on Tom's suggestion: let's skip the 'last login...
radhika [Thu, 24 Jul 2014 15:34:05 +0000 (11:34 -0400)]
3193: updated the vm section based on Tom's suggestion: let's skip the 'last login' column for now, until we can make logs record the actual VM uuid

9 years agoMerge branch 'master' into 3193-manage-account
radhika [Thu, 24 Jul 2014 15:11:11 +0000 (11:11 -0400)]
Merge branch 'master' into 3193-manage-account

9 years ago3193: add manage account action to users controller.
radhika [Thu, 24 Jul 2014 15:10:20 +0000 (11:10 -0400)]
3193: add manage account action to users controller.

9 years agoMerge branch '3200-ajax-error-handling'
Brett Smith [Thu, 24 Jul 2014 15:03:04 +0000 (11:03 -0400)]
Merge branch '3200-ajax-error-handling'

Closes #3200, #3207, #3251, #3276, #3322.

9 years ago3200: Improve error handling in Workbench's API client.
Brett Smith [Wed, 23 Jul 2014 20:50:18 +0000 (16:50 -0400)]
3200: Improve error handling in Workbench's API client.

* Fix the class used for error responses that can be parsed but don't
  have a dedicated subclass.

* Ensure that exception.api_response[:errors] is always an array.

This improves the error reporting for #3207.

9 years ago3200: X-Editable renders errors even without a message array.
Brett Smith [Wed, 23 Jul 2014 20:29:12 +0000 (16:29 -0400)]
3200: X-Editable renders errors even without a message array.

The previous version was causing the X-Editable popup to spin
infinitely when the JSON errors were null.  See #3207, #3251.

9 years ago3200: Workbench copes better when a tab fails to load.
Brett Smith [Tue, 22 Jul 2014 22:04:58 +0000 (18:04 -0400)]
3200: Workbench copes better when a tab fails to load.

9 years agoMerge branch 'master' into 3219-further-docker-improvements
Ward Vandewege [Thu, 24 Jul 2014 14:00:35 +0000 (10:00 -0400)]
Merge branch 'master' into 3219-further-docker-improvements

9 years agoMerge branch 'master' into 3193-manage-account
radhika [Wed, 23 Jul 2014 21:20:08 +0000 (17:20 -0400)]
Merge branch 'master' into 3193-manage-account

9 years ago3193: add manage account page to topnav.
radhika [Wed, 23 Jul 2014 21:19:03 +0000 (17:19 -0400)]
3193: add manage account page to topnav.

9 years ago* add argument help to build.sh
Ward Vandewege [Wed, 23 Jul 2014 01:42:03 +0000 (21:42 -0400)]
* add argument help to build.sh

* fix clean/realclean/deepclean invocation syntax in documentation

refs #3219

9 years agoSuppress warnings and spurious error messages for the clean, realclean
Ward Vandewege [Wed, 23 Jul 2014 01:18:15 +0000 (21:18 -0400)]
Suppress warnings and spurious error messages for the clean, realclean
and deepclean targets.

refs #3219

9 years agoMake --deepclean also remove the crosbymichael/skydns and crosbymichael/skydock images.
Ward Vandewege [Tue, 22 Jul 2014 20:26:18 +0000 (16:26 -0400)]
Make --deepclean also remove the crosbymichael/skydns and crosbymichael/skydock images.

refs #3219

9 years agoMake the build script prompt for a shell login name.
Ward Vandewege [Tue, 22 Jul 2014 20:19:53 +0000 (16:19 -0400)]
Make the build script prompt for a shell login name.

refs #3219

9 years ago2044: Improve reporting when project sharing fails.
Brett Smith [Tue, 22 Jul 2014 20:12:59 +0000 (16:12 -0400)]
2044: Improve reporting when project sharing fails.

Our select modal knows how to render an errors key in the JSON
response.  This commit adjusts the project controller to conform to
this convention.  Refs #2044, #3200.

9 years agoMerge branch '2769-keep-delete-request'
Tim Pierce [Tue, 22 Jul 2014 20:10:24 +0000 (16:10 -0400)]
Merge branch '2769-keep-delete-request'

Refs #2769

9 years ago2769: reorganize REST handlers
Tim Pierce [Tue, 22 Jul 2014 20:09:28 +0000 (16:09 -0400)]
2769: reorganize REST handlers

Reorganizing REST handlers into their own source file.

Refs #2769.

9 years agoWhitespace fixes
Ward Vandewege [Tue, 22 Jul 2014 18:48:55 +0000 (14:48 -0400)]
Whitespace fixes

refs #3219

9 years ago* move the downloading of skydns and skydock from arvdock to
Ward Vandewege [Tue, 22 Jul 2014 18:44:16 +0000 (14:44 -0400)]
* move the downloading of skydns and skydock from arvdock to
  build_tools/Makefile

* add echo statements to the start of build steps in
  build_tools/Makefile

refs #3219