Tom Clegg [Wed, 20 Sep 2017 21:44:22 +0000 (17:44 -0400)]
12298: Allow non-null log when cancelling an unrunnable container.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Sep 2017 20:03:53 +0000 (16:03 -0400)]
Fix dashboard crash on uncommitted container request.
refs #12246
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 20 Sep 2017 20:01:08 +0000 (17:01 -0300)]
12195: Catch the special case when a RateLimitReachedError exception is raised,
as it doesn't have a header attribute like its parent class.
Updated integration test to add a retry with this kind of error.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Wed, 20 Sep 2017 15:33:31 +0000 (11:33 -0400)]
Merge branch '12247-no-failed-checksum'
closes #12247
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Sep 2017 13:57:31 +0000 (09:57 -0400)]
Merge branch '12107-faster-git'
closes #12107
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Sep 2017 13:54:47 +0000 (09:54 -0400)]
12107: Add protective comment.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Sep 2017 13:45:06 +0000 (09:45 -0400)]
Merge branch '12084-dispatch-stuck'
closes #12084
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Sep 2017 02:14:37 +0000 (22:14 -0400)]
12084: Fix dispatcher getting bogged down on "too many open files".
Previously, handling the "too many open files" error from popen3
consisted of sleeping 1 second and trying the next job in the
queue. When lots of jobs were queued, this meant getting stuck in
start_jobs() for a long time, futilely trying to start different jobs,
which all failed for the same reason.
Worse, being stuck here meant none of the working jobs could finish,
which meant no file descriptors could be freed.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Sep 2017 01:54:05 +0000 (21:54 -0400)]
12084: Remove dead code.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Sep 2017 01:51:38 +0000 (21:51 -0400)]
12084: Reap children whose threads exit abnormally (status == nil).
Ruby's thread status is false if the thread exited normally, nil if it
exited abnormally.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 19 Sep 2017 14:02:47 +0000 (10:02 -0400)]
12107: Fix test suite dependence on outer git config.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 19 Sep 2017 14:47:06 +0000 (10:47 -0400)]
12247: Simplify (Hash)Sum() usage.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 19 Sep 2017 14:37:43 +0000 (10:37 -0400)]
12247: Propagate write errors, don't hide them with "bad checksum".
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 19 Sep 2017 13:56:29 +0000 (09:56 -0400)]
12107: Fix broken commit-exists-in-internal-repo check.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 19 Sep 2017 13:52:02 +0000 (09:52 -0400)]
12107: Fix broken "git branch --contains" check.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 18 Sep 2017 20:46:13 +0000 (16:46 -0400)]
12107: Test fetch-and-tag on unreferenced and non-tip commits.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 18 Sep 2017 20:41:31 +0000 (16:41 -0400)]
12107: Use a fresh internal.git repo for each test run.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 18 Sep 2017 19:13:36 +0000 (15:13 -0400)]
Bump PhantomJS version no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 15 Sep 2017 15:42:01 +0000 (11:42 -0400)]
Arvbox explicitly initializes postgres with en_US.UTF-8 locale. no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 18 Sep 2017 19:09:08 +0000 (15:09 -0400)]
Fix quoting in test_with_arvbox no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 18 Sep 2017 18:33:36 +0000 (14:33 -0400)]
Merge branch 'master' into 12107-faster-git
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 18 Sep 2017 18:25:25 +0000 (14:25 -0400)]
Merge branch '12197-show-pdh-in-trash'
closes #12197
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 18 Sep 2017 18:24:48 +0000 (14:24 -0400)]
Merge branch 'master' into 12197-show-pdh-in-trash
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 18 Sep 2017 18:10:40 +0000 (14:10 -0400)]
12197: Update PDH column label for consistency.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 18 Sep 2017 14:13:58 +0000 (10:13 -0400)]
Remove -f from 'docker tag' due to Docker update refs #12234
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 18 Sep 2017 03:03:29 +0000 (23:03 -0400)]
12197: Test PDH search and display on trash page.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 14 Sep 2017 15:31:05 +0000 (11:31 -0400)]
12197: Remove trash/delete labels on content rows.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 15 Sep 2017 00:22:49 +0000 (20:22 -0400)]
Arvbox support for caching and offline install of npm packages. no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 14 Sep 2017 19:06:17 +0000 (15:06 -0400)]
12032: Add permission_refresh_lock
This ensures that when refreshing the permission view in a transaction, any
other transactions affecting permissions will either be committed (so that
results are visible to the refresh) or blocked (waiting to perform its own
refresh).
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Sep 2017 20:14:10 +0000 (16:14 -0400)]
12032: Don't need to refresh permission view in database seeds, should be done already.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Sep 2017 19:59:57 +0000 (15:59 -0400)]
12032: Remove user_uuid special case from all_perms.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Sep 2017 19:50:35 +0000 (15:50 -0400)]
12032: Remove unnecessary checks on user_uuids.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Sep 2017 19:43:56 +0000 (15:43 -0400)]
12032: Remove hopefully-unnecessary view refreshes between tests.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Sep 2017 17:17:46 +0000 (13:17 -0400)]
12032: Refresh materialized_permission_view immediately after migration.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Sep 2017 15:51:28 +0000 (11:51 -0400)]
12032: Remove startnode from materialized_permission_view (again), tests pass
without it.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Sep 2017 15:32:24 +0000 (11:32 -0400)]
12032: Update structure.sql from master schema + migration only.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Sep 2017 20:57:06 +0000 (16:57 -0400)]
12032: Container readable check uses subquery instead join to avoid returning
duplicate rows.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Sep 2017 18:18:32 +0000 (14:18 -0400)]
12032: Database reset used by integration tests refreshes permission view.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Sep 2017 16:12:42 +0000 (12:12 -0400)]
12032: Fix down migration.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Sep 2017 18:29:47 +0000 (14:29 -0400)]
12032: Restore create_permission_view.sql with note that it is only
present for migration reasons.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Sep 2017 17:59:16 +0000 (13:59 -0400)]
12032: Update install guide to specify minimum Postgres version of 9.3
Include instructions for using SCL to get a newer Postgres on CentOS7.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Sep 2017 16:36:53 +0000 (12:36 -0400)]
12032: Add missing files.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Sep 2017 16:33:28 +0000 (12:33 -0400)]
12032: Rename permission_view and remove Rails permission cache.
Always refresh permission view when permission graph changes.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Sep 2017 21:44:10 +0000 (17:44 -0400)]
12032: Controller & integration test teardown invalidates permission view.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Sep 2017 17:39:12 +0000 (13:39 -0400)]
12032: Add comments to migration. Also special case api_client_authorizations
in readable_by.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Sep 2017 14:59:42 +0000 (10:59 -0400)]
12032: Update structure.sql
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Sep 2017 03:41:34 +0000 (23:41 -0400)]
12032: Added migration for materialized view
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Sep 2017 03:12:41 +0000 (23:12 -0400)]
12032: Ensure that permission_view is invalidated & refreshed
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 6 Sep 2017 20:01:36 +0000 (16:01 -0400)]
12032: Fix owner_check to include user_uuids and target_owner_uuid
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 6 Sep 2017 18:54:50 +0000 (14:54 -0400)]
12032: Make queries to groups table a special case, streamlines permission logic.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 31 Aug 2017 18:58:43 +0000 (14:58 -0400)]
12032: Add copyright notice
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 31 Aug 2017 18:50:29 +0000 (14:50 -0400)]
12032: Bug fix so include_trash still respects permissions.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 31 Aug 2017 16:10:11 +0000 (12:10 -0400)]
12032: Test for ensure_unique_name when untrashing groups.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 31 Aug 2017 14:37:13 +0000 (10:37 -0400)]
12032: Refactor readable_by to minimize subqueries.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 30 Aug 2017 17:13:29 +0000 (13:13 -0400)]
12032: Log.readable_by uses permission_view
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 29 Aug 2017 13:08:19 +0000 (09:08 -0400)]
12032: Controller support for group trash.
Conttroller support and testing for contents, index, show, trash, untrash,
containers.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 28 Aug 2017 13:57:05 +0000 (09:57 -0400)]
12032: Adding controller tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 25 Aug 2017 18:23:30 +0000 (14:23 -0400)]
12032: Add test fixtures
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 25 Aug 2017 01:58:38 +0000 (21:58 -0400)]
12032: Fix hiding trashed groups directly owned by user.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 24 Aug 2017 21:09:49 +0000 (17:09 -0400)]
12032: Tests for group delete behavior.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 24 Aug 2017 20:22:12 +0000 (16:22 -0400)]
12032: Additional refactoring of readable_by. Refactor "trashable" into module.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 24 Aug 2017 16:03:09 +0000 (12:03 -0400)]
12032: Use permission_view in subquery to filter objects readable by user.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 6 Sep 2017 15:35:55 +0000 (11:35 -0400)]
12032: Benchmark for group permissions.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 14 Sep 2017 16:18:40 +0000 (12:18 -0400)]
Merge branch '12248-crunch2-reversemap' closes #12248
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 14 Sep 2017 15:20:15 +0000 (12:20 -0300)]
Merge branch '12236-libcloud-blob-storage-regression'
Refs #12236
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 14 Sep 2017 15:03:28 +0000 (12:03 -0300)]
12236: Bumped libcloud version dependency to 2.2.1.dev2
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Wed, 13 Sep 2017 21:07:41 +0000 (17:07 -0400)]
Merge branch '12194-search-always-valid'
closes #12194
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 13 Sep 2017 20:37:46 +0000 (16:37 -0400)]
12197: Show UUID and PDH of trashed collections.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 13 Sep 2017 20:03:07 +0000 (16:03 -0400)]
12197: Add missing end tags.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 13 Sep 2017 19:37:09 +0000 (15:37 -0400)]
Merge branch '12194-search-always-valid'
refs #12194
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 12 Sep 2017 20:58:33 +0000 (16:58 -0400)]
12248: Bugfix reversemap.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Wed, 13 Sep 2017 14:54:05 +0000 (11:54 -0300)]
Merge branch '12236-libcloud-blob-storage-regression'
Refs #12236
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 13 Sep 2017 14:47:26 +0000 (11:47 -0300)]
12236: Bumped libcloud to 2.2.1.dev2 that fixes a regression
related to alternate cloud environments.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Wed, 13 Sep 2017 13:32:46 +0000 (09:32 -0400)]
12107: Fix unreliable use of git-fetch.
Git-fetch does not fetch by sha1. If we can't find and fetch a branch
containing the desired commit, we still need to fall back on
pack-objects|unpack-objects.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 12 Sep 2017 16:06:53 +0000 (12:06 -0400)]
Fix arvbox-demo (2nd try) refs #12234
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 12 Sep 2017 15:44:26 +0000 (11:44 -0400)]
Merge branch '12186-cwl-no-nameroot' closes #12186
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 12 Sep 2017 15:17:55 +0000 (11:17 -0400)]
Merge branch '10349-cookbook' closes #10349
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 12 Sep 2017 15:15:24 +0000 (11:15 -0400)]
10349: Add support for syntax highlighting inline code blocks.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 12 Sep 2017 13:47:59 +0000 (09:47 -0400)]
10349: Add code snippet for combining collections.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Sep 2017 18:04:05 +0000 (14:04 -0400)]
Fix arvbox-demo refs #12234
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Sep 2017 17:21:31 +0000 (13:21 -0400)]
Merge branch '12234-arvbox-stretch' refs #12234
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Sep 2017 15:57:54 +0000 (11:57 -0400)]
10349: Fix formatting. Add link from user guide to improve discoverability.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Sep 2017 15:51:21 +0000 (11:51 -0400)]
12234: Need --system so pip installs SDK packages globally.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Sep 2017 14:59:02 +0000 (10:59 -0400)]
10349: Add snippts for listing inputs/outputs of containers, failed child
requests, list logs of request.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 30 Aug 2017 21:33:13 +0000 (17:33 -0400)]
10349: Add "Create a collection sharing link"
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 14 Aug 2017 13:33:00 +0000 (09:33 -0400)]
10349: Working on Python code snippits for manipulating container requests.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 29 Aug 2017 16:56:55 +0000 (12:56 -0400)]
12186: Filter nameroot from runner-submitted input object.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 29 Aug 2017 16:48:59 +0000 (12:48 -0400)]
12186: Filter nameroot/nameext from RunInSingleContainer and update test.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Sep 2017 16:58:43 +0000 (12:58 -0400)]
12234: Update arvbox to Debian stretch, Docker 17, Postgres 9.6
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 8 Sep 2017 16:22:49 +0000 (12:22 -0400)]
Merge branch '10472-csummary-cwl-pipeline'
closes #10472
closes #12221
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 8 Sep 2017 16:20:26 +0000 (12:20 -0400)]
12033: Fix npm sanity-check recipe.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 8 Sep 2017 16:17:29 +0000 (12:17 -0400)]
10472: Use itervalues() instead of iteritems() if key is not used.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 8 Sep 2017 14:05:34 +0000 (10:05 -0400)]
10472: Fix logging format.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 8 Sep 2017 13:52:32 +0000 (09:52 -0400)]
12221: Merge branch '12221-crunchstat-summary-valueerror'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 8 Sep 2017 13:50:26 +0000 (09:50 -0400)]
12194: Update comment.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 8 Sep 2017 02:17:39 +0000 (22:17 -0400)]
12194: Handle to_tsquery(null).
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 8 Sep 2017 02:12:12 +0000 (22:12 -0400)]
12107: Use git-fetch instead of pack|unpack, and only when needed.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 8 Sep 2017 01:45:23 +0000 (21:45 -0400)]
12194: Fix empty search case.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 8 Sep 2017 01:08:57 +0000 (21:08 -0400)]
12194: Fix accidentally mutated argument.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 8 Sep 2017 01:03:38 +0000 (21:03 -0400)]
12194: Construct @@ operands more carefully to avoid bad API munge.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
projects / arvados.git / log