radhika [Wed, 4 Nov 2015 16:34:35 +0000 (11:34 -0500)]
5538: close any idle connections before a POST or DELETE request.
Tom Clegg [Wed, 4 Nov 2015 05:19:40 +0000 (00:19 -0500)]
Merge branch '7444-dockercleaner-containers' closes #7444
Tom Clegg [Wed, 4 Nov 2015 04:55:11 +0000 (23:55 -0500)]
Merge branch '5824-keep-web'
refs #5824
Tom Clegg [Wed, 4 Nov 2015 04:06:45 +0000 (23:06 -0500)]
5824: Merge branch 'master' into 5824-keep-web
Tom Clegg [Wed, 4 Nov 2015 03:50:50 +0000 (22:50 -0500)]
5824: Avoid sending empty slices through toRead chan. Fixes race in test case.
Tom Clegg [Tue, 3 Nov 2015 19:06:52 +0000 (14:06 -0500)]
5824: Turn off debug printfs unless enabled by calling program.
radhika [Tue, 3 Nov 2015 15:43:33 +0000 (10:43 -0500)]
closes #7534
Merge branch '7534-superuser-token'
radhika [Tue, 3 Nov 2015 15:43:07 +0000 (10:43 -0500)]
Merge branch 'master' into 7534-superuser-token
Tom Clegg [Tue, 3 Nov 2015 14:55:50 +0000 (09:55 -0500)]
5824: Use session cookie instead of persistent.
Tom Clegg [Tue, 3 Nov 2015 14:52:33 +0000 (09:52 -0500)]
5824: Clarity edits in usage docs.
Peter Amstutz [Mon, 2 Nov 2015 22:42:54 +0000 (17:42 -0500)]
Merge branch '7593-cwl-crunchrunner' closes #7593
Tom Clegg [Mon, 2 Nov 2015 20:53:05 +0000 (15:53 -0500)]
7444: Rename kwarg remove_stopped_containers -> remove_containers_onexit
Tom Clegg [Mon, 2 Nov 2015 15:26:39 +0000 (10:26 -0500)]
7444: Set docker container name to {taskUUID}-{attemptNum}.
Tom Clegg [Fri, 30 Oct 2015 22:28:46 +0000 (18:28 -0400)]
7444: Do not remove docker containers with docker --rm; let dockercleaner do it.
Tom Clegg [Mon, 2 Nov 2015 20:46:22 +0000 (15:46 -0500)]
7444: Clean stopped containers at startup.
Peter Amstutz [Mon, 2 Nov 2015 20:42:48 +0000 (15:42 -0500)]
7593: Add version hint to arvados-python-client. Add get_uploaded() and
add_uploaded(). Add comments to clarify CollectionFsAccess._match
Tom Clegg [Mon, 2 Nov 2015 19:03:52 +0000 (14:03 -0500)]
7444: Test deletion error handling.
Tom Clegg [Fri, 30 Oct 2015 22:44:20 +0000 (18:44 -0400)]
7444: Note automatic removal of stopped containers, and how to disable.
Tom Clegg [Fri, 30 Oct 2015 22:18:09 +0000 (18:18 -0400)]
7444: Delete containers as soon as they stop.
Tom Clegg [Fri, 30 Oct 2015 19:57:44 +0000 (15:57 -0400)]
5824: Mention -anonymous-token in godoc. Sync usage messages.
Brett Smith [Fri, 30 Oct 2015 19:12:04 +0000 (15:12 -0400)]
6638/7370: Force new builds of Python backports with dependencies.
Even though we've declared these dependencies for a while now, Jenkins
has not published packages with them, because without a new upstream
version, fpm believes that there's no new package to build. This
resolves that by building a new iteration of the affected packages.
This is less than ideal, because if a new version is released, we'll
automatically package it with iteration 2. That is not correct, but
it doesn't affect any functionality, and we already have a plan to do
things properly in #6885. So we'll live with "correct functionality,
gross aesthetics" until then.
Ward approved in conversation. Refs #6638, #7370.
Brett Smith [Fri, 30 Oct 2015 18:47:31 +0000 (14:47 -0400)]
Merge branch '7668-crunch-node-properties-wip'
Closes #7668, #7672.
Tom Clegg [Thu, 29 Oct 2015 16:06:55 +0000 (12:06 -0400)]
7668: Move node stats from info to properties in fixtures.
Brett Smith [Wed, 28 Oct 2015 15:37:58 +0000 (11:37 -0400)]
7668: crunch-dispatch gets node stats from properties field.
This information moved from the info field to the properties field as
part of #3605. This simply updates crunch-dispatch to catch up with
the change.
Tom Clegg [Fri, 30 Oct 2015 18:22:21 +0000 (14:22 -0400)]
5824: Merge branch 'master' into 5824-keep-web
Tom Clegg [Fri, 30 Oct 2015 18:19:35 +0000 (14:19 -0400)]
Sync Gemfile.lock to current Gemfile.
amends
77460b2190e84df4178c25f014bbf136d559922e
refs #7582
Tom Clegg [Fri, 30 Oct 2015 18:02:10 +0000 (14:02 -0400)]
5824: Add -anonymous-token flag.
Tom Clegg [Fri, 30 Oct 2015 18:01:20 +0000 (14:01 -0400)]
5824: Update arvadostest usage.
radhika [Fri, 30 Oct 2015 00:50:36 +0000 (20:50 -0400)]
7534: move the print statement of the token obtained out the library into script.
Tom Clegg [Thu, 29 Oct 2015 20:31:37 +0000 (16:31 -0400)]
5824: Merge branch 'master' into 5824-keep-web
Tom Clegg [Thu, 29 Oct 2015 18:47:16 +0000 (14:47 -0400)]
5824: Add some clarifying comments and golint/vet/fmt fixes.
Tom Clegg [Thu, 29 Oct 2015 17:40:18 +0000 (13:40 -0400)]
5824: Add comments and fix variable names, cf. golint.
Tom Clegg [Thu, 29 Oct 2015 16:06:09 +0000 (12:06 -0400)]
5824: Add tests.
radhika [Thu, 29 Oct 2015 19:55:58 +0000 (15:55 -0400)]
7534: return an existing token instead of creating a new each time; add tests.
Peter Amstutz [Thu, 29 Oct 2015 15:32:24 +0000 (11:32 -0400)]
7593: Add arvados-cwl-runner to disambiguate if there is a conflict over what
should be default cwl-runner.
Brett Smith [Thu, 29 Oct 2015 15:14:48 +0000 (11:14 -0400)]
7695: Docs reflect that docker_image can't be a collection UUID.
We intended to allow this, but it's not actually implemented. Update
the docs for now. We'll add the functionality in refs #7695.
Tom Clegg [Thu, 29 Oct 2015 15:09:11 +0000 (11:09 -0400)]
5824: Add test for file in subdir.
Tom Clegg [Thu, 29 Oct 2015 15:08:59 +0000 (11:08 -0400)]
5824: Clarify docs.
radhika [Thu, 29 Oct 2015 14:30:14 +0000 (10:30 -0400)]
7534: refactor the code from create_superuser_token.rb script into lib and verify manually that existing behavior is preserved.
Peter Amstutz [Wed, 28 Oct 2015 16:24:36 +0000 (12:24 -0400)]
Fix typo in arvados-cli version number refs #7582
radhika [Wed, 28 Oct 2015 16:22:51 +0000 (12:22 -0400)]
closes #7492
Merge branch '7492-keepproxy-upstream-errors'
Peter Amstutz [Wed, 28 Oct 2015 16:21:46 +0000 (12:21 -0400)]
Update Gemfile pin on arvados-cli to ensure latest crunch-job refs #7582
radhika [Wed, 28 Oct 2015 16:21:21 +0000 (12:21 -0400)]
7167: update keep-rsync tests to use "Contains" instead of "HasSuffix" to make sure the error message checks pass even when retries happen.
radhika [Wed, 28 Oct 2015 16:18:33 +0000 (12:18 -0400)]
Merge branch 'master' into 7492-keepproxy-upstream-errors
Tom Clegg [Wed, 28 Oct 2015 16:17:54 +0000 (12:17 -0400)]
5824: Rename conventional dl.* to collections.*
Tom Clegg [Wed, 28 Oct 2015 15:37:47 +0000 (11:37 -0400)]
5824: Rename cookie to arvados_api_token.
radhika [Wed, 28 Oct 2015 15:33:46 +0000 (11:33 -0400)]
refs #7167
Add a log statement to see why the test failed intermittently.
Peter Amstutz [Wed, 28 Oct 2015 15:16:32 +0000 (11:16 -0400)]
7593: Make peter/crunchrunner the default repository (so that it works on
cloud.curoverse.com) until the deployment plan is sorted out.
Peter Amstutz [Wed, 28 Oct 2015 15:08:53 +0000 (11:08 -0400)]
7593: Generate files replaces $(task.keep)/ with keep: notation to reference
keep files.
Tom Clegg [Wed, 28 Oct 2015 14:52:34 +0000 (10:52 -0400)]
5824: Rename keepdl to keep-web.
Tom Clegg [Tue, 27 Oct 2015 21:15:16 +0000 (17:15 -0400)]
5824: Clarify docs.
Tom Clegg [Tue, 27 Oct 2015 14:33:08 +0000 (10:33 -0400)]
5824: Fix wrong title.
Ward Vandewege [Wed, 28 Oct 2015 14:22:58 +0000 (10:22 -0400)]
Update redmine links in README.
No issue #
radhika [Wed, 28 Oct 2015 13:51:26 +0000 (09:51 -0400)]
Merge branch 'master' into 7492-keepproxy-upstream-errors
Tom Clegg [Wed, 28 Oct 2015 13:15:58 +0000 (09:15 -0400)]
Fix typo in example config file
No issue #
radhika [Tue, 27 Oct 2015 23:48:47 +0000 (19:48 -0400)]
7492: add a test that simulates keep server unavailable error.
radhika [Tue, 27 Oct 2015 22:39:12 +0000 (18:39 -0400)]
Merge branch 'master' into 7492-keepproxy-upstream-errors
radhika [Tue, 27 Oct 2015 22:38:33 +0000 (18:38 -0400)]
closes #7453
Merge branch '7453-create-new-group-with-role'
Peter Amstutz [Tue, 27 Oct 2015 20:54:30 +0000 (16:54 -0400)]
7593: Fixup to use keep: URI scheme globbing for outputs.
Peter Amstutz [Tue, 27 Oct 2015 20:26:10 +0000 (16:26 -0400)]
7593: References to files in keep must have keep: URI scheme. Improve error
handling. Support configuring which git repo has crunchrunner.
radhika [Tue, 27 Oct 2015 20:09:20 +0000 (16:09 -0400)]
7453: revert back to no generic "add new" button in all those pages.
radhika [Tue, 27 Oct 2015 19:46:33 +0000 (15:46 -0400)]
7453: Upon Nico's request, put back the "Add a new" button in keep disks, keep services, and virtual machines pages.
radhika [Tue, 27 Oct 2015 18:11:13 +0000 (14:11 -0400)]
Merge branch 'master' into 7492-keepproxy-upstream-errors
Peter Amstutz [Tue, 27 Oct 2015 17:06:19 +0000 (13:06 -0400)]
Merge branch '7582-crunch-runner' refs #7582
radhika [Tue, 27 Oct 2015 15:35:28 +0000 (11:35 -0400)]
7453: Disable submit button in add group dialog until a name is entered.
Observed that the "Add a new user" button is offered in /users page even to non-admin users. Corrected this bug.
Deleted one test in errors_test that was trying to access the "Add new group" button in /groups page.
Also, deleted the one test in virtual_machines_test that were trying to click the "Add new" button.
Added a new test in users_test that clicks the "Add new group" button and verifies the group is added.
Tom Clegg [Tue, 27 Oct 2015 14:39:11 +0000 (10:39 -0400)]
Merge branch '7160-azure-blob-doc' closes #7160
Tom Clegg [Tue, 27 Oct 2015 14:37:33 +0000 (10:37 -0400)]
7160: Clarify exampleAccountName -> exampleStorageAccountName
Peter Amstutz [Tue, 27 Oct 2015 14:22:10 +0000 (10:22 -0400)]
7582: Fixup concurrency around signal catching and forwarding.
radhika [Tue, 27 Oct 2015 13:23:24 +0000 (09:23 -0400)]
7453: do not display generic "add new" button in the groups, keep_disks, keep_services, links, nodes, and virtual_machines listing pages.
Tom Clegg [Mon, 26 Oct 2015 22:14:41 +0000 (18:14 -0400)]
7160: Add Azure Storage config page, update keepstore help text, add run script.
Peter Amstutz [Mon, 26 Oct 2015 19:53:07 +0000 (15:53 -0400)]
7593: Don't upload the same files more than once. Fix handling "./" in glob paths.
radhika [Mon, 26 Oct 2015 19:39:27 +0000 (15:39 -0400)]
7453: Add "Add new group" button to user admin page.
Brett Smith [Mon, 26 Oct 2015 18:46:57 +0000 (14:46 -0400)]
Merge branch 'pr/25'
Closes #7307.
Brett Smith [Mon, 26 Oct 2015 18:24:51 +0000 (14:24 -0400)]
7307: Clarify intended failure in arv-git-httpd SplitHostPort test.
Peter Amstutz [Mon, 26 Oct 2015 18:13:45 +0000 (14:13 -0400)]
7582: Passes draft-2 conformance tests.
radhika [Sat, 24 Oct 2015 20:00:38 +0000 (16:00 -0400)]
7492: add a keepproxy test with temporary connection refused error.
Brett Smith [Sat, 24 Oct 2015 19:21:27 +0000 (15:21 -0400)]
Merge branch '7587-pysdk-retry-test-wip'
Closes #7587, #7647.
Brett Smith [Fri, 23 Oct 2015 20:34:38 +0000 (16:34 -0400)]
7587: Add test for PySDK API client socket.error retries.
Brett Smith [Fri, 23 Oct 2015 19:42:59 +0000 (15:42 -0400)]
7587: Refactor PySDK API tests to use TestCaseWithServers.
History: first this test case used entirely mock responses. Then we
started running the API server to provide a discovery document. Then
people added tests that expected to talk to a real test server,
particularly test_empty_list and test_nonempty_list. These tests
would talk to the API server configured in the user's environment, and
fail if that's not a test API server.
Using TestCaseWithServers fixes the immediate bug in the tests, and
better reflects the current real state of the test case.
Peter Amstutz [Fri, 23 Oct 2015 21:43:38 +0000 (17:43 -0400)]
7582: Fixup to work with latest cwltool. Runs jobs with Go crunchrunner.
Bryan Cosca [Fri, 23 Oct 2015 21:30:43 +0000 (17:30 -0400)]
Merge branch '6600-retry-job-helpers'
refs #6600
radhika [Fri, 23 Oct 2015 21:28:07 +0000 (17:28 -0400)]
Merge branch 'master' into 7492-keepproxy-upstream-errors
Bryan Cosca [Fri, 23 Oct 2015 21:19:57 +0000 (17:19 -0400)]
6600: Added Retryloop to task_set_output(), current_task(), and current_job() to python SDK
Peter Amstutz [Fri, 23 Oct 2015 19:17:50 +0000 (15:17 -0400)]
Merge branch 'master' into 7582-crunch-runner
Conflicts:
sdk/cli/bin/crunch-job
Peter Amstutz [Fri, 23 Oct 2015 19:00:01 +0000 (15:00 -0400)]
Merge branch '7582-run-any-docker-container' refs #7582
Peter Amstutz [Fri, 23 Oct 2015 18:57:55 +0000 (14:57 -0400)]
7582: Add test for stdbuf in /bin/sh bootstrap script.
Peter Amstutz [Fri, 23 Oct 2015 15:16:27 +0000 (11:16 -0400)]
7582: Adjust signal catching to eliminate races. Tighten up code based on comments.
radhika [Fri, 23 Oct 2015 15:14:43 +0000 (11:14 -0400)]
7492: cleanup error checking in keepproxy
radhika [Fri, 23 Oct 2015 13:44:47 +0000 (09:44 -0400)]
Merge branch 'master' into 7492-keepproxy-upstream-errors
Brett Smith [Fri, 23 Oct 2015 00:09:37 +0000 (20:09 -0400)]
Merge branch '7587-httplib2-retries-wip'
Refs #7587. Closes #7640.
Brett Smith [Wed, 21 Oct 2015 16:35:45 +0000 (12:35 -0400)]
7587: PySDK retries socket.error exceptions from API requests.
radhika [Thu, 22 Oct 2015 19:32:31 +0000 (15:32 -0400)]
closes #7546
Merge branch '7546-put-retry'
radhika [Thu, 22 Oct 2015 19:31:32 +0000 (15:31 -0400)]
7546: update comment to explain why we do not want to retry when status code is 503.
radhika [Thu, 22 Oct 2015 19:24:43 +0000 (15:24 -0400)]
Merge branch 'master' into 7546-put-retry
Peter Amstutz [Thu, 22 Oct 2015 19:08:15 +0000 (15:08 -0400)]
7582: fix typo --user=$try_user to $try_user_arg
Peter Amstutz [Thu, 22 Oct 2015 19:05:11 +0000 (15:05 -0400)]
7582: Don't call stdbuf in minimal run mode.
Peter Amstutz [Thu, 22 Oct 2015 18:55:44 +0000 (14:55 -0400)]
7582: Make fields in Job, Task, TaskDefs public so that json loading reflection works.
Peter Amstutz [Thu, 22 Oct 2015 18:16:56 +0000 (14:16 -0400)]
7582: Add parameter substitution. Improve validity checking for filenames.
Adjust signal handling & added test. Tweak behavior on exit code handling.
Move IArvadosClient to crunchrunner.
radhika [Thu, 22 Oct 2015 17:14:00 +0000 (13:14 -0400)]
refs #7167
Merge branch '7167-keep-rsync'
radhika [Thu, 22 Oct 2015 17:03:18 +0000 (13:03 -0400)]
Merge branch 'master' into 7167-keep-rsync
projects / arvados.git / log