Peter Amstutz [Wed, 18 Mar 2015 18:44:44 +0000 (14:44 -0400)]
5318: Add note on sharing page for repository object about lag time taking effect.
Peter Amstutz [Wed, 18 Mar 2015 17:52:58 +0000 (13:52 -0400)]
Merge branch '5500-crunch-temporary-failure' refs #5500
Peter Amstutz [Wed, 18 Mar 2015 17:48:11 +0000 (13:48 -0400)]
5500: Add TASK_TEMPFAIL constant. shell_or_die always exits non-zero on error.
Peter Amstutz [Wed, 18 Mar 2015 16:23:21 +0000 (12:23 -0400)]
5500: Add SLURM "Communication connection failure" to pattern of temporary node
failures. "pip install" failure returns temporary error status (111) so the
task can be retried.
Radhika Chippada [Wed, 18 Mar 2015 13:44:32 +0000 (09:44 -0400)]
refs #5383
Merge branch '5383-api-db-current-time'
Radhika Chippada [Wed, 18 Mar 2015 13:41:23 +0000 (09:41 -0400)]
Merge branch 'master' into 5383-api-db-current-time
Radhika Chippada [Wed, 18 Mar 2015 13:38:26 +0000 (09:38 -0400)]
5383: Add back Time.parse(). Without it the value returned would be of the format 2015-03-18 13:37:11 UTC,
and with Time.parse it would be 2015-03-18 09:37:11 -0400, which is the same as Time.now.
Brett Smith [Wed, 18 Mar 2015 12:56:54 +0000 (08:56 -0400)]
Merge branch '5313-node-manager-node-naming-tag-wip'
Refs #5313. Closes #5434, #5467.
Brett Smith [Fri, 13 Mar 2015 15:11:35 +0000 (11:11 -0400)]
5313: Node Manager has cloud-specific logic to get node FQDNs.
On AWS, we put compute nodes' FQDN in the name field. On GCE, we
can't do that: it can't contain dots. Add a node_fqdn classmethod to
cloud drivers to get a node's FQDN from the right place, and use that
method when deciding whether or not to sync a node.
Syncing a node will occasionally raise an "Invalid fingerprint"
exception on GCE. This is nonfatal. Add a comment explaining why.
Radhika Chippada [Wed, 18 Mar 2015 01:08:31 +0000 (21:08 -0400)]
closes #5383
Merge branch '5383-api-db-current-time'
Radhika Chippada [Wed, 18 Mar 2015 00:50:15 +0000 (20:50 -0400)]
5383: better test assertion
Radhika Chippada [Wed, 18 Mar 2015 00:44:20 +0000 (20:44 -0400)]
Merge branch 'master' into 5383-api-db-current-time
Peter Amstutz [Tue, 17 Mar 2015 17:35:42 +0000 (13:35 -0400)]
When copying a collection that already exists on the destination, fetch
manifest text from the destination in order to create a new collection with the
correct signing tokens. closes #5475
Radhika Chippada [Tue, 17 Mar 2015 14:57:28 +0000 (10:57 -0400)]
5383: minor test assertion updates
Radhika Chippada [Tue, 17 Mar 2015 14:53:47 +0000 (10:53 -0400)]
Merge branch 'master' into 5383-api-db-current-time
Radhika Chippada [Tue, 17 Mar 2015 14:51:16 +0000 (10:51 -0400)]
5383: add one more test that updates an object twice and verifies the updated_at times are different.
Radhika Chippada [Tue, 17 Mar 2015 14:33:30 +0000 (10:33 -0400)]
5383: remove unused include statement from log_test (it is now the same as in master with no updates in this branch).
Peter Amstutz [Tue, 17 Mar 2015 14:28:24 +0000 (10:28 -0400)]
Merge branch '5476-connect-timeout-scale' closes #5476
Radhika Chippada [Tue, 17 Mar 2015 14:27:35 +0000 (10:27 -0400)]
5383: postgres current_timestamp is the start of transaction and clock_timestamp is the current time at the statement execution. updated db_current_time to use clock_timestamp and reverted back all updates to log_test.rb
Peter Amstutz [Tue, 17 Mar 2015 14:27:03 +0000 (10:27 -0400)]
5476: Describe timeout behavior if KeepClient.__init__ docstring.
Peter Amstutz [Tue, 17 Mar 2015 14:09:46 +0000 (10:09 -0400)]
5476: Better implementation of connection timeout scaling. Updated docstring
for current_timeout.
Peter Amstutz [Tue, 17 Mar 2015 13:37:20 +0000 (09:37 -0400)]
5476: Increase connection timeout when retrying keep get and put.
Radhika Chippada [Mon, 16 Mar 2015 23:16:46 +0000 (19:16 -0400)]
5383: revert db_current_time back to Time.now in application_controller as the usages were for error tokens and request profiling only.
Radhika Chippada [Mon, 16 Mar 2015 23:07:01 +0000 (19:07 -0400)]
5383: revert back db_current_time update to Time.now in api scripts and middleware rb files.
Radhika Chippada [Mon, 16 Mar 2015 22:35:58 +0000 (18:35 -0400)]
5383: update db_current_time to return date with more precision. Update log_test to use db_current_time instead of Time.now to ensure if there is a slight difference in time between db time and server time, the test does not fail.
Radhika Chippada [Mon, 16 Mar 2015 21:41:28 +0000 (17:41 -0400)]
Merge branch 'master' into 5383-api-db-current-time
Tom Clegg [Mon, 16 Mar 2015 21:19:16 +0000 (17:19 -0400)]
Merge branch '5207-expires-at-time' closes #5207
Radhika Chippada [Mon, 16 Mar 2015 19:30:29 +0000 (15:30 -0400)]
Merge branch 'master' into 5383-api-db-current-time
Peter Amstutz [Mon, 16 Mar 2015 19:00:23 +0000 (15:00 -0400)]
Merge branch '5448-crunch-job-task-fixes' refs #5448
Peter Amstutz [Mon, 16 Mar 2015 17:50:56 +0000 (13:50 -0400)]
5448: Clean up old cid files during job start.
Brett Smith [Mon, 16 Mar 2015 16:41:36 +0000 (12:41 -0400)]
Merge branch '5319-collection-pdh-fix-performance-wip'
Refs #5319.
Brett Smith [Mon, 16 Mar 2015 14:09:57 +0000 (10:09 -0400)]
5319: Improve performance of Collection PDH fix migration.
* Use PostgreSQL's native regular expression search to limit the
number of records we pull through ActiveRecord.
* Use a smaller batch size to avoid pulling pathological batches of
records that cause swapping.
Radhika Chippada [Mon, 16 Mar 2015 16:24:16 +0000 (12:24 -0400)]
Merge branch 'master' into 5383-api-db-current-time
Radhika Chippada [Mon, 16 Mar 2015 16:21:34 +0000 (12:21 -0400)]
5383: blob.rb uses db_current_time as well. since it is using static methods, the module needs to be "extended"
Peter Amstutz [Mon, 16 Mar 2015 15:26:49 +0000 (11:26 -0400)]
5448: Fix cid file cleanup.
Radhika Chippada [Mon, 16 Mar 2015 15:20:42 +0000 (11:20 -0400)]
5383: add test that creates an object and does a lookup using that object's created_at timestamp.
Peter Amstutz [Mon, 16 Mar 2015 14:47:49 +0000 (10:47 -0400)]
5448: Add --all to "docker images" because it turns out it doesn't list all the installed images by default!
Tom Clegg [Mon, 16 Mar 2015 14:18:19 +0000 (10:18 -0400)]
Merge branch 'master' from github.com/daftano. No issue #
Radhika Chippada [Mon, 16 Mar 2015 13:52:48 +0000 (09:52 -0400)]
Merge branch 'master' into 5383-api-db-current-time
Radhika Chippada [Mon, 16 Mar 2015 13:51:54 +0000 (09:51 -0400)]
5383: use db current time in place of Time.now
Peter Amstutz [Mon, 16 Mar 2015 13:40:32 +0000 (09:40 -0400)]
5448: Don't create new tasks if $main::success is defined. Add failure count
to cidfile and delete cidfile in reapchildren() to fix Docker cidfile collision.
Peter Amstutz [Mon, 16 Mar 2015 13:09:48 +0000 (09:09 -0400)]
Merge branch 'install-doc-uuid-prefix' no issue #
Peter Amstutz [Mon, 16 Mar 2015 13:08:38 +0000 (09:08 -0400)]
Merge branch '4158-fix-compute-node-detail' closes #4158
David [Mon, 16 Mar 2015 11:38:22 +0000 (12:38 +0100)]
Update install-workbench-app.html.textile.liquid
Add libsqlite3-dev dependency
David [Mon, 16 Mar 2015 11:22:31 +0000 (12:22 +0100)]
Update install-workbench-app.html.textile.liquid
Remove sudo because to run sudo you need to have it already installed
Add git to download sources from github
Brett Smith [Fri, 13 Mar 2015 21:31:10 +0000 (17:31 -0400)]
5034: Update Workbench integration tests.
A lot of tests started failing because
* they were looking for the string "content hash" to assert they were
on a collection page, or
* they expect the portable data hash to be real text on the page (as
opposed to the value of an <input>).
Fixes:
* Have the upload test check that the collection is empty by looking
for the relevant size information, which was specified by the story.
* Make sure we're on a specific collection page by looking for the
collection's name or UUID (depending on what's available).
* Refute we're on a specific collection page by matching against the
URL. This seems much safer in the long run.
* Remove the "Content hash" assertion from projects test altogether.
The prior text assertion should be sufficient to ensure we're on the
right page.
Refs #5034.
Brett Smith [Fri, 13 Mar 2015 19:16:44 +0000 (15:16 -0400)]
5034: Update Workbench Gemfile post-merge.
Refs #5034.
Brett Smith [Fri, 13 Mar 2015 19:14:11 +0000 (15:14 -0400)]
Merge branch '5034-workbench-collection-summary-wip'
Closes #5027, #5034, #5452.
Brett Smith [Thu, 12 Mar 2015 14:15:39 +0000 (10:15 -0400)]
5034: Improve Workbench collection display.
* Display the UUID, and make it auto-select for easy copying.
* Do the same for the portable data hash, and call it the content
address to emphasize that.
* Display information about the collection's size on the show page and
preview pane. This relies on an updated Ruby SDK.
* Clean up code that checks for a portable data hash in the UUID.
That can't happen anymore thanks to the redirect/list display logic
in the controller.
Brett Smith [Tue, 10 Mar 2015 18:43:29 +0000 (14:43 -0400)]
5034: Add Keep::Manifest#files_size to Ruby SDK.
Ward Vandewege [Fri, 13 Mar 2015 15:24:46 +0000 (11:24 -0400)]
Merge branch '5211-improved-top-navbar'
closes #5211
Ward Vandewege [Fri, 13 Mar 2015 15:24:08 +0000 (11:24 -0400)]
Merge branch 'master' into 5211-improved-top-navbar
Ward Vandewege [Fri, 13 Mar 2015 15:23:22 +0000 (11:23 -0400)]
Remove reference to as yet non-existant compute node setup page.
Refs #5211
Radhika Chippada [Fri, 13 Mar 2015 15:06:17 +0000 (11:06 -0400)]
refs #3761
Merge branch '3761-pull-list-worker'
Peter Amstutz [Fri, 13 Mar 2015 15:23:32 +0000 (11:23 -0400)]
Typo fix and gofmt fix.
Radhika Chippada [Fri, 13 Mar 2015 14:54:23 +0000 (10:54 -0400)]
3761: We do not need to MakeArvadosClient to create the pullq worker. Otherwise, we need the ARVADOS_API_HOST env variable in keep.
Peter Amstutz [Fri, 13 Mar 2015 14:43:13 +0000 (10:43 -0400)]
Add note to application.default.yml and installation documentation that
uuid_prefix must be exactly 5 characters.
Peter Amstutz [Fri, 13 Mar 2015 14:15:40 +0000 (10:15 -0400)]
4158: Compute node details are in properties, not info
Tom Clegg [Thu, 12 Mar 2015 20:17:25 +0000 (16:17 -0400)]
Merge branch 'patch-1' from github.com/daftano. No issue #
David [Thu, 12 Mar 2015 16:07:42 +0000 (17:07 +0100)]
Use postgresql options to reduce questions
-S set new role to not be a superuser
-R disable the creation of more new roles for the new role
Radhika Chippada [Thu, 12 Mar 2015 16:07:35 +0000 (12:07 -0400)]
closes #5418
Merge branch '5418-brand-unclickable-anonymous'
Radhika Chippada [Thu, 12 Mar 2015 16:07:02 +0000 (12:07 -0400)]
Merge branch 'master' into 5418-brand-unclickable-anonymous
Radhika Chippada [Thu, 12 Mar 2015 16:05:33 +0000 (12:05 -0400)]
5418: fix assert formatting
Tom Clegg [Thu, 12 Mar 2015 15:42:26 +0000 (11:42 -0400)]
5207: Change expires_at column type from date to datetime.
Brett Smith [Thu, 12 Mar 2015 15:35:35 +0000 (11:35 -0400)]
Merge branch '5104-ruby-sdk-collections-wip'
Closes #5104, #5423.
Brett Smith [Sun, 8 Mar 2015 21:12:40 +0000 (17:12 -0400)]
5104: Add Collection class to the Ruby SDK.
This provides an interface to do filesystem-like operations on a tree
expressed in a manifest. It currently supports copy, rename, and
remove operations, and will give us common ground for further work in
Ruby components.
Brett Smith [Thu, 5 Mar 2015 17:44:02 +0000 (12:44 -0500)]
5104: Refactor Ruby SDK test infrastructure into sharable module.
Radhika Chippada [Thu, 12 Mar 2015 15:06:51 +0000 (11:06 -0400)]
5418: topnav brand name is clickable only when user is logged in.
Peter Amstutz [Thu, 12 Mar 2015 13:36:37 +0000 (09:36 -0400)]
Fix arv-normalize regression. refs #5145 refs #4823
David [Thu, 12 Mar 2015 09:36:37 +0000 (10:36 +0100)]
Update prerequisites
Remove sudo because to run sudo you should already have to have it installed
Add git to download sources from github
Radhika Chippada [Wed, 11 Mar 2015 21:20:11 +0000 (17:20 -0400)]
refs #5145
Merge branch '5145-combine-collections-repeated-filenames'
Radhika Chippada [Wed, 11 Mar 2015 20:36:51 +0000 (16:36 -0400)]
5145: include manifest text in assert error message to identify the cause of test failure in jenkins.
Radhika Chippada [Wed, 11 Mar 2015 18:41:09 +0000 (14:41 -0400)]
closes #5145
Merge branch '5145-combine-collections-repeated-filenames'
Ward Vandewege [Wed, 11 Mar 2015 18:39:10 +0000 (14:39 -0400)]
A series of changes to the top nav bar to make it more compact.
Refs #5211
Radhika Chippada [Wed, 11 Mar 2015 18:38:30 +0000 (14:38 -0400)]
Merge branch 'master' into 5145-combine-collections-repeated-filenames
Radhika Chippada [Wed, 11 Mar 2015 18:29:36 +0000 (14:29 -0400)]
closes #4426
Merge branch '4426-search-documentation'
Radhika Chippada [Wed, 11 Mar 2015 18:29:18 +0000 (14:29 -0400)]
Merge branch 'master' into 4426-search-documentation
Peter Amstutz [Wed, 11 Mar 2015 18:43:49 +0000 (14:43 -0400)]
4426: Adjust styling for search button on search box
Radhika Chippada [Wed, 11 Mar 2015 18:04:08 +0000 (14:04 -0400)]
4426: convert the search icon to a button
Brett Smith [Wed, 11 Mar 2015 18:00:31 +0000 (14:00 -0400)]
Add missing re import to PySDK arvfile module.
No issue #.
Radhika Chippada [Wed, 11 Mar 2015 17:39:08 +0000 (13:39 -0400)]
Merge branch 'master' into 4426-search-documentation
Radhika Chippada [Wed, 11 Mar 2015 17:38:35 +0000 (13:38 -0400)]
4426: name attribute is needed for google search
Radhika Chippada [Wed, 11 Mar 2015 16:07:41 +0000 (12:07 -0400)]
Merge branch 'master' into 5145-combine-collections-repeated-filenames
Radhika Chippada [Wed, 11 Mar 2015 16:07:28 +0000 (12:07 -0400)]
5145: small updates
Radhika Chippada [Wed, 11 Mar 2015 15:53:07 +0000 (11:53 -0400)]
closes #5304
Merge branch '5304-include-nulls-when-notequal-filter'
Radhika Chippada [Wed, 11 Mar 2015 15:52:41 +0000 (11:52 -0400)]
Merge branch 'master' into 5304-include-nulls-when-notequal-filter
Radhika Chippada [Wed, 11 Mar 2015 15:21:20 +0000 (11:21 -0400)]
closes #3761
Merge branch '3761-pull-list-worker'
Radhika Chippada [Wed, 11 Mar 2015 15:14:00 +0000 (11:14 -0400)]
Merge branch 'master' into 5145-combine-collections-repeated-filenames
Radhika Chippada [Wed, 11 Mar 2015 14:13:57 +0000 (10:13 -0400)]
3761: Expand DiscoverKeepServers method to return service_roots and use it in test
Radhika Chippada [Wed, 11 Mar 2015 13:32:21 +0000 (09:32 -0400)]
Merge branch 'master' into 3761-pull-list-worker
Radhika Chippada [Wed, 11 Mar 2015 13:31:44 +0000 (09:31 -0400)]
3761: add a test with invalid data manager token and expect the item to be rejected.
Radhika Chippada [Tue, 10 Mar 2015 22:08:49 +0000 (18:08 -0400)]
Merge branch 'master' into 4426-search-documentation
Radhika Chippada [Tue, 10 Mar 2015 22:08:16 +0000 (18:08 -0400)]
4426: add google search in doc topnav
Tom Clegg [Tue, 10 Mar 2015 20:06:37 +0000 (16:06 -0400)]
Merge branch '5182-cors-error-reporting' closes #5182
Tom Clegg [Tue, 10 Mar 2015 19:52:18 +0000 (15:52 -0400)]
Merge branch '5073-docker-limitations' closes #5073
Tom Clegg [Tue, 10 Mar 2015 19:46:26 +0000 (15:46 -0400)]
Merge branch '5105-ajax-redirect' closes #5105
Tom Clegg [Tue, 10 Mar 2015 19:44:45 +0000 (15:44 -0400)]
5182: Tweak error messages.
Tom Clegg [Tue, 10 Mar 2015 18:50:14 +0000 (14:50 -0400)]
5105: Clarify "no double-layout" asserts. Remove redundant "not on welcome page" asserts.
Radhika Chippada [Tue, 10 Mar 2015 18:44:50 +0000 (14:44 -0400)]
5304: include nulls in resutls when filter operator is "!="
Tom Clegg [Tue, 10 Mar 2015 18:24:04 +0000 (14:24 -0400)]
5073: Update ruby version to 2.1.5
projects / arvados.git / log