arvados.git
6 years ago14196: Login process returns v2 tokens
Peter Amstutz [Tue, 2 Oct 2018 17:18:33 +0000 (13:18 -0400)]
14196: Login process returns v2 tokens

Unit/functional/integration tests now use v2 tokens by default.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoa-c-r recognizes that http and https needs to be uploaded to keep
Peter Amstutz [Sat, 29 Sep 2018 15:17:29 +0000 (11:17 -0400)]
a-c-r recognizes that http and https needs to be uploaded to keep

refs #13573

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '14236-delete-last-file'
Tom Clegg [Thu, 27 Sep 2018 14:03:40 +0000 (10:03 -0400)]
Merge branch '14236-delete-last-file'

fixes #14236

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoAdd missing copyright headers.
Tom Clegg [Wed, 26 Sep 2018 16:13:06 +0000 (12:13 -0400)]
Add missing copyright headers.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '14197-federated-containers' refs #14197
Peter Amstutz [Tue, 25 Sep 2018 15:22:05 +0000 (11:22 -0400)]
Merge branch '14197-federated-containers' refs #14197

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago14197: Another test checking uuid from federated container request.
Peter Amstutz [Mon, 24 Sep 2018 20:56:59 +0000 (16:56 -0400)]
14197: Another test checking uuid from federated container request.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago14197: Federated container request test tweaks
Peter Amstutz [Mon, 24 Sep 2018 20:53:40 +0000 (16:53 -0400)]
14197: Federated container request test tweaks

* Check uuid on created container request.

* Add test for bogus cluster id

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago14197: Add cluster_id to discovery document for create method.
Peter Amstutz [Fri, 21 Sep 2018 19:23:18 +0000 (15:23 -0400)]
14197: Add cluster_id to discovery document for create method.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago14197: Supports routing object create requests, with tests
Peter Amstutz [Fri, 21 Sep 2018 18:25:34 +0000 (14:25 -0400)]
14197: Supports routing object create requests, with tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago14236: Fix regexp in test.
Tom Clegg [Fri, 21 Sep 2018 18:07:34 +0000 (14:07 -0400)]
14236: Fix regexp in test.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '10865-legacy-jobs-api' closes #10865
Peter Amstutz [Thu, 20 Sep 2018 18:57:30 +0000 (14:57 -0400)]
Merge branch '10865-legacy-jobs-api' closes #10865

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago14197: Generalizing federated routing
Peter Amstutz [Thu, 20 Sep 2018 18:55:31 +0000 (14:55 -0400)]
14197: Generalizing federated routing

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '13493-document-federation' refs #13493
Peter Amstutz [Thu, 20 Sep 2018 18:13:28 +0000 (14:13 -0400)]
Merge branch '13493-document-federation' refs #13493

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '14242-verify-manifest-pdh' closes #14242
Peter Amstutz [Thu, 20 Sep 2018 18:12:33 +0000 (14:12 -0400)]
Merge branch '14242-verify-manifest-pdh' closes #14242

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago10865: Update documentation, replace disable_api_methods with enable_legacy_jobs_api
Peter Amstutz [Thu, 20 Sep 2018 17:55:19 +0000 (13:55 -0400)]
10865: Update documentation, replace disable_api_methods with enable_legacy_jobs_api

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoSanitize how we get the rvm GPG key, and remove a dependency on the GPG
Ward Vandewege [Thu, 20 Sep 2018 17:53:51 +0000 (13:53 -0400)]
Sanitize how we get the rvm GPG key, and remove a dependency on the GPG
keyservers which are flakey.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

6 years ago10865: Add test for check_enable_legacy_jobs_api
Peter Amstutz [Thu, 20 Sep 2018 16:57:40 +0000 (12:57 -0400)]
10865: Add test for check_enable_legacy_jobs_api

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago14242: Add a test for manifest_text PDH checking
Peter Amstutz [Thu, 20 Sep 2018 14:46:11 +0000 (10:46 -0400)]
14242: Add a test for manifest_text PDH checking

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago14236: Don't omit empty manifest_text in update requests.
Tom Clegg [Wed, 19 Sep 2018 20:43:47 +0000 (16:43 -0400)]
14236: Don't omit empty manifest_text in update requests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago14236: Test deleting the last file in a collection.
Tom Clegg [Wed, 19 Sep 2018 20:22:58 +0000 (16:22 -0400)]
14236: Test deleting the last file in a collection.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago14197: Verify manifest text matches portable data hash that was requested
Peter Amstutz [Wed, 19 Sep 2018 20:15:47 +0000 (16:15 -0400)]
14197: Verify manifest text matches portable data hash that was requested

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoFix package building - support modern versions of pip.
Ward Vandewege [Wed, 19 Sep 2018 20:06:50 +0000 (16:06 -0400)]
Fix package building - support modern versions of pip.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

6 years ago10865: Fix query for empty jobs table
Peter Amstutz [Wed, 19 Sep 2018 19:15:11 +0000 (15:15 -0400)]
10865: Fix query for empty jobs table

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago10865: Add enable_legacy_jobs_api configuration option
Peter Amstutz [Wed, 19 Sep 2018 18:52:54 +0000 (14:52 -0400)]
10865: Add enable_legacy_jobs_api configuration option

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13493: Notes about cluster id, work in progress
Peter Amstutz [Wed, 19 Sep 2018 13:35:08 +0000 (09:35 -0400)]
13493: Notes about cluster id, work in progress

Also add arvados federation diagram, copyright notice

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13493: Federation documentation covers record retrieval, keep
Peter Amstutz [Tue, 18 Sep 2018 20:26:59 +0000 (16:26 -0400)]
13493: Federation documentation covers record retrieval, keep

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '13752-migrate-index-data'
Tom Clegg [Tue, 18 Sep 2018 19:47:43 +0000 (15:47 -0400)]
Merge branch '13752-migrate-index-data'

refs #13752

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13752: Merge branch 'master' into 13752-migrate-index-data
Tom Clegg [Tue, 18 Sep 2018 19:43:28 +0000 (15:43 -0400)]
13752: Merge branch 'master' into 13752-migrate-index-data

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '13994-proxy-remote'
Tom Clegg [Tue, 18 Sep 2018 19:42:06 +0000 (15:42 -0400)]
Merge branch '13994-proxy-remote'

refs #13994

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13994: Merge branch 'master' into 13994-proxy-remote
Tom Clegg [Tue, 18 Sep 2018 19:40:26 +0000 (15:40 -0400)]
13994: Merge branch 'master' into 13994-proxy-remote

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13752: Migrate file_names column using multiple transactions.
Tom Clegg [Mon, 17 Sep 2018 21:50:13 +0000 (17:50 -0400)]
13752: Migrate file_names column using multiple transactions.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13752: De-duplicate file and stream names in collections.file_names.
Tom Clegg [Mon, 17 Sep 2018 21:49:21 +0000 (17:49 -0400)]
13752: De-duplicate file and stream names in collections.file_names.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13994: Fix missing error message.
Tom Clegg [Mon, 17 Sep 2018 18:34:05 +0000 (14:34 -0400)]
13994: Fix missing error message.

When the request failed too early to produce an HTTP status code, the
error returned to the client was:

"Could not write sufficient replicas: [0] ; [0] "

Now the error message is included. It gets truncated to 100 chars
later on, but it's something:

"Could not write sufficient replicas: [0] Put
http://localhost:52367/831f95ffae4233b52059fbb8a0c62fbf: dial tcp [::1
]:52367: connect: conn; [0] Put
http://localhost:53807/831f95ffae4233b52059fbb8a0c62fbf: dial tcp
[::1]:53807: connect: conn"

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13994: Fix service discovery race.
Tom Clegg [Mon, 17 Sep 2018 18:33:59 +0000 (14:33 -0400)]
13994: Fix service discovery race.

Making keepclient.RefreshServiceDiscovery asynchronous didn't work
out: tests rely on it to ensure old services won't be used.

Instead, speed things up a bit by refreshing all known clients'
service lists concurrently instead of serially.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '14087-federated-collection-by-pdh' refs #14087
Peter Amstutz [Mon, 17 Sep 2018 15:58:37 +0000 (11:58 -0400)]
Merge branch '14087-federated-collection-by-pdh' refs #14087

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '14203-crunch-run-mkdir' closes #14203
Peter Amstutz [Mon, 17 Sep 2018 15:58:22 +0000 (11:58 -0400)]
Merge branch '14203-crunch-run-mkdir' closes #14203

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago14087: Add Accept-Encoding to list of headers to delete when proxying
Peter Amstutz [Mon, 17 Sep 2018 15:54:35 +0000 (11:54 -0400)]
14087: Add Accept-Encoding to list of headers to delete when proxying

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13493: Federation docs wip
Peter Amstutz [Mon, 17 Sep 2018 14:56:05 +0000 (10:56 -0400)]
13493: Federation docs wip

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13994: Fix token handling in collection performance test.
Tom Clegg [Mon, 17 Sep 2018 14:34:43 +0000 (10:34 -0400)]
13994: Fix token handling in collection performance test.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13994: Use entire token for blob signatures.
Tom Clegg [Mon, 17 Sep 2018 14:07:35 +0000 (10:07 -0400)]
13994: Use entire token for blob signatures.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago14203: Tweak error messages.
Peter Amstutz [Fri, 14 Sep 2018 15:39:26 +0000 (11:39 -0400)]
14203: Tweak error messages.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago14087: Refactor federation search for collections by PDH
Peter Amstutz [Fri, 14 Sep 2018 15:27:11 +0000 (11:27 -0400)]
14087: Refactor federation search for collections by PDH

The shorter, non-PDH search case now comes first.  Also adjusts the
logic that decides when to skip federation and makes it wrap the
federation endpoint routing.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '13773-will-fail-container-status'
Lucas Di Pentima [Thu, 13 Sep 2018 20:46:02 +0000 (17:46 -0300)]
Merge branch '13773-will-fail-container-status'
Closes #13773

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoMerge branch 'master' into 13773-will-fail-container-status
Lucas Di Pentima [Thu, 13 Sep 2018 20:05:48 +0000 (17:05 -0300)]
Merge branch 'master' into 13773-will-fail-container-status

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13773: Update logging level checking for runtime status updates.
Lucas Di Pentima [Thu, 13 Sep 2018 19:30:35 +0000 (16:30 -0300)]
13773: Update logging level checking for runtime status updates.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13994: Fix import cycle.
Tom Clegg [Thu, 13 Sep 2018 18:43:28 +0000 (14:43 -0400)]
13994: Fix import cycle.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13773: Fix test
Lucas Di Pentima [Wed, 12 Sep 2018 20:58:00 +0000 (17:58 -0300)]
13773: Fix test

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13773: Update test that confirms runtime_status is updated when a child fails
Lucas Di Pentima [Wed, 12 Sep 2018 20:14:41 +0000 (17:14 -0300)]
13773: Update test that confirms runtime_status is updated when a child fails

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13994: Fix deadlock in keepstore tests.
Tom Clegg [Tue, 11 Sep 2018 16:55:05 +0000 (12:55 -0400)]
13994: Fix deadlock in keepstore tests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13994: Proxy to remote cluster if +R hint given.
Tom Clegg [Tue, 11 Sep 2018 16:54:41 +0000 (12:54 -0400)]
13994: Proxy to remote cluster if +R hint given.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago14203: Mkdir failing with os.ErrExist is not a fatal error
Peter Amstutz [Wed, 12 Sep 2018 19:37:33 +0000 (15:37 -0400)]
14203: Mkdir failing with os.ErrExist is not a fatal error

Don't fail CaptureOutput and cancel the container if a Mkdir returns
os.ErrExist because a directory already exists.  Fixes bcbio failing
postprocess_variants step.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13773: Removed superfluous documentation
Lucas Di Pentima [Wed, 12 Sep 2018 18:41:42 +0000 (15:41 -0300)]
13773: Removed superfluous documentation

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13773: Add well known runtime_status' keys data type validation.
Lucas Di Pentima [Wed, 12 Sep 2018 12:13:35 +0000 (09:13 -0300)]
13773: Add well known runtime_status' keys data type validation.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoMerge branch '13993-federated-collection' refs #13993
Peter Amstutz [Tue, 11 Sep 2018 15:40:10 +0000 (11:40 -0400)]
Merge branch '13993-federated-collection' refs #13993

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago14087: Rate limit the number of parallel requests
Peter Amstutz [Tue, 11 Sep 2018 13:52:27 +0000 (09:52 -0400)]
14087: Rate limit the number of parallel requests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago14087: Remove debug print. Comments.
Peter Amstutz [Mon, 10 Sep 2018 21:03:19 +0000 (17:03 -0400)]
14087: Remove debug print.  Comments.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago14087: Check for remote clusters before searching
Peter Amstutz [Mon, 10 Sep 2018 20:49:18 +0000 (16:49 -0400)]
14087: Check for remote clusters before searching

Added some more comments about the implementation as well.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago14087: Fetch federated collection by PDH
Peter Amstutz [Mon, 10 Sep 2018 19:28:35 +0000 (15:28 -0400)]
14087: Fetch federated collection by PDH

Implement parallel query of remotes.  First response is returned to
client, other responses in flight are cancelled.  Adds tests.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago14087: Federated fetch by PDH WIP
Peter Amstutz [Fri, 7 Sep 2018 22:14:26 +0000 (18:14 -0400)]
14087: Federated fetch by PDH WIP

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13993: Add TestGetLocalCollection
Peter Amstutz [Tue, 11 Sep 2018 15:05:34 +0000 (11:05 -0400)]
13993: Add TestGetLocalCollection

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13773: Enhance error/warning runtime status display on workbench.
Lucas Di Pentima [Tue, 11 Sep 2018 14:44:48 +0000 (11:44 -0300)]
13773: Enhance error/warning runtime status display on workbench.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13773: Don't intercept logger.info() calls for runtime status.
Lucas Di Pentima [Tue, 11 Sep 2018 14:42:37 +0000 (11:42 -0300)]
13773: Don't intercept logger.info() calls for runtime status.

* On multi line log messages, use the first as a status and the rest as detail.
* Revert done.logtail() usage as it's no longer needed for failed childs
reporting.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13993: Need to explicitly handle paths that don't end in /
Peter Amstutz [Mon, 10 Sep 2018 21:04:37 +0000 (17:04 -0400)]
13993: Need to explicitly handle paths that don't end in /

Otherwise Go will generate a 301 Moved Permanently from collection to collections/

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13993: Don't export internal types
Peter Amstutz [Mon, 10 Sep 2018 20:20:32 +0000 (16:20 -0400)]
13993: Don't export internal types

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13993: Consolidate SignedLocatorPattern with keepclient.SignedLocatorRe
Peter Amstutz [Mon, 10 Sep 2018 20:18:01 +0000 (16:18 -0400)]
13993: Consolidate SignedLocatorPattern with keepclient.SignedLocatorRe

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13773: Updates documentation
Lucas Di Pentima [Mon, 10 Sep 2018 17:48:38 +0000 (14:48 -0300)]
13773: Updates documentation

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13773: Intercept logging calls to update runtime_status on runner containers.
Lucas Di Pentima [Fri, 7 Sep 2018 20:57:21 +0000 (17:57 -0300)]
13773: Intercept logging calls to update runtime_status on runner containers.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13993: Support for federated collection requests by uuid
Peter Amstutz [Fri, 7 Sep 2018 19:52:52 +0000 (15:52 -0400)]
13993: Support for federated collection requests by uuid

Do remote record retrevial using a salted token, update the block
signatures to "remote" signatures (changing +A to +R and adding the
remote cluster id), and return it to the original client.

Refactor routing and proxying of federated requeststo provide hooks to
support this and future types of requests.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13773: Update runtime_status_error() method to report warning & activity status
Lucas Di Pentima [Fri, 7 Sep 2018 17:04:02 +0000 (14:04 -0300)]
13773: Update runtime_status_error() method to report warning & activity status

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13146: Returns real json response
Peter Amstutz [Thu, 2 Aug 2018 20:09:52 +0000 (16:09 -0400)]
13146: Returns real json response

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13146: Projects shared with me WIP
Peter Amstutz [Thu, 2 Aug 2018 19:35:17 +0000 (15:35 -0400)]
13146: Projects shared with me WIP

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13773: Show 'Warning' label on jobs that have this runtime status and aren't failing.
Lucas Di Pentima [Thu, 6 Sep 2018 14:51:40 +0000 (11:51 -0300)]
13773: Show 'Warning' label on jobs that have this runtime status and aren't failing.

* Show warning information panel on job detailed view
* Show tooltip with error/warning information on dashboard
* Fix test

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoA new version of our libcloud fork is available.
Ward Vandewege [Thu, 6 Sep 2018 14:46:10 +0000 (10:46 -0400)]
A new version of our libcloud fork is available.

refs #14150

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

6 years agoMerge branch '11065-optional-audit-logging'
Tom Clegg [Thu, 6 Sep 2018 14:37:42 +0000 (10:37 -0400)]
Merge branch '11065-optional-audit-logging'

refs #11065

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago11065: Merge branch 'master' into 11065-optional-audit-logging
Tom Clegg [Thu, 6 Sep 2018 14:29:25 +0000 (10:29 -0400)]
11065: Merge branch 'master' into 11065-optional-audit-logging

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoAdd http_timeout to runtimeContext refs #13542
Peter Amstutz [Wed, 5 Sep 2018 21:37:57 +0000 (17:37 -0400)]
Add http_timeout to runtimeContext refs #13542

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '14082-round-off' refs #14082
Peter Amstutz [Wed, 5 Sep 2018 20:22:31 +0000 (16:22 -0400)]
Merge branch '14082-round-off' refs #14082

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '13973-max-cr-priority' refs #13973
Peter Amstutz [Wed, 5 Sep 2018 20:21:39 +0000 (16:21 -0400)]
Merge branch '13973-max-cr-priority' refs #13973

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoFix gofmt in slurm.go refs #14110
Peter Amstutz [Wed, 5 Sep 2018 19:44:46 +0000 (15:44 -0400)]
Fix gofmt in slurm.go refs #14110

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13773: Containers & CRs show "Failing" when a child job failed.
Lucas Di Pentima [Wed, 5 Sep 2018 19:41:29 +0000 (16:41 -0300)]
13773: Containers & CRs show "Failing" when a child job failed.

Also, at the detailed view an error panel is displayed with the error message
and detail, if any.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years agoMerge branch 'wtsi/13809-root_url-protocol-port-configuration'
Peter Amstutz [Wed, 5 Sep 2018 18:56:46 +0000 (14:56 -0400)]
Merge branch 'wtsi/13809-root_url-protocol-port-configuration'

refs #13809

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch 'wtsi/python-api-timeout' refs #13542
Peter Amstutz [Wed, 5 Sep 2018 18:53:17 +0000 (14:53 -0400)]
Merge branch 'wtsi/python-api-timeout' refs #13542

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch 'wtsi/14110-c-d-s-limit-slurm-concurrency' refs #14110
Peter Amstutz [Wed, 5 Sep 2018 18:47:19 +0000 (14:47 -0400)]
Merge branch 'wtsi/14110-c-d-s-limit-slurm-concurrency' refs #14110

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago13973: Use a straightforward maximum() query to compute max priority
Peter Amstutz [Wed, 5 Sep 2018 18:16:28 +0000 (14:16 -0400)]
13973: Use a straightforward maximum() query to compute max priority

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years ago14082: Round up numeric values in container request that must be integers
Peter Amstutz [Wed, 5 Sep 2018 17:57:04 +0000 (13:57 -0400)]
14082: Round up numeric values in container request that must be integers

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

6 years agoMerge branch '14152-s3-v4-signature'
Tom Clegg [Tue, 4 Sep 2018 19:45:45 +0000 (15:45 -0400)]
Merge branch '14152-s3-v4-signature'

refs #14152

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '14008-containers-index'
Tom Clegg [Tue, 4 Sep 2018 19:37:57 +0000 (15:37 -0400)]
Merge branch '14008-containers-index'

refs #14008

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoAdd test case for filtering on is_trashed in groups#contents.
Tom Clegg [Tue, 4 Sep 2018 15:25:51 +0000 (11:25 -0400)]
Add test case for filtering on is_trashed in groups#contents.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoRemove redundant test case.
Tom Clegg [Tue, 4 Sep 2018 15:25:18 +0000 (11:25 -0400)]
Remove redundant test case.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago14008: Merge branch 'master' into 14008-containers-index
Tom Clegg [Tue, 4 Sep 2018 19:03:58 +0000 (15:03 -0400)]
14008: Merge branch 'master' into 14008-containers-index

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago14152: Use V4 signer for S3 in regions that use V4 for EC2.
Tom Clegg [Tue, 4 Sep 2018 18:00:04 +0000 (14:00 -0400)]
14152: Use V4 signer for S3 in regions that use V4 for EC2.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years agoMerge branch '14009-container-reuse-index'
Tom Clegg [Tue, 4 Sep 2018 15:36:15 +0000 (11:36 -0400)]
Merge branch '14009-container-reuse-index'

refs #14009

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

6 years ago13773: Updates tests checking that runtime_status_error() is called when needed
Lucas Di Pentima [Thu, 23 Aug 2018 20:28:53 +0000 (17:28 -0300)]
13773: Updates tests checking that runtime_status_error() is called when needed

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13773: Updates runner container's runtime_status on child failures.
Lucas Di Pentima [Thu, 23 Aug 2018 15:04:56 +0000 (12:04 -0300)]
13773: Updates runner container's runtime_status on child failures.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13773: Add runtime_status to be accesible via API
Lucas Di Pentima [Tue, 21 Aug 2018 15:10:58 +0000 (12:10 -0300)]
13773: Add runtime_status to be accesible via API

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13773: Expand test to prove that non-error runtime_status doesn't avoid reuse.
Lucas Di Pentima [Tue, 14 Aug 2018 15:36:39 +0000 (12:36 -0300)]
13773: Expand test to prove that non-error runtime_status doesn't avoid reuse.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13773: Fix reuse query & add tests
Lucas Di Pentima [Tue, 14 Aug 2018 14:25:10 +0000 (11:25 -0300)]
13773: Fix reuse query & add tests

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13773: Add documentation.
Lucas Di Pentima [Mon, 6 Aug 2018 17:45:43 +0000 (14:45 -0300)]
13773: Add documentation.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13773: Filter out running containers that will fail from reuse selection.
Lucas Di Pentima [Thu, 2 Aug 2018 18:51:01 +0000 (15:51 -0300)]
13773: Filter out running containers that will fail from reuse selection.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

6 years ago13773: Adds runtime_status field to containers on API server
Lucas Di Pentima [Tue, 31 Jul 2018 13:38:56 +0000 (10:38 -0300)]
13773: Adds runtime_status field to containers on API server

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>