Peter Amstutz [Wed, 27 May 2015 19:11:58 +0000 (15:11 -0400)]
Merge branch '6141-doc-workbench-links' refs #6141
radhika [Wed, 27 May 2015 19:03:54 +0000 (15:03 -0400)]
Merge branch 'master' into 6057-public-projects-page
Peter Amstutz [Wed, 27 May 2015 18:23:03 +0000 (14:23 -0400)]
Merge branch '6090-docker-use-local-sso' closes #6138
Ward Vandewege [Wed, 27 May 2015 16:42:44 +0000 (12:42 -0400)]
Add GPG key for RVM installation in the doc.
No issue #
Tom Clegg [Wed, 27 May 2015 13:06:10 +0000 (09:06 -0400)]
Merge branch '6098-full-text-index' refs #6098
Tom Clegg [Wed, 27 May 2015 13:05:40 +0000 (09:05 -0400)]
6098: Recreate full text indexes with leading spaces, to persuade Postgres to actually use them.
radhika [Tue, 26 May 2015 22:58:18 +0000 (18:58 -0400)]
Merge branch 'master' into 6057-public-projects-page
radhika [Tue, 26 May 2015 22:54:13 +0000 (18:54 -0400)]
6057: if /projects/public is accessed when anonymous config is not enabled, show 404.
radhika [Tue, 26 May 2015 20:04:41 +0000 (16:04 -0400)]
Merge branch 'master' into 6093-refresh-docs
radhika [Tue, 26 May 2015 19:57:11 +0000 (15:57 -0400)]
6093: one more
radhika [Tue, 26 May 2015 19:51:44 +0000 (15:51 -0400)]
6093: a few more updates
radhika [Tue, 26 May 2015 15:56:29 +0000 (11:56 -0400)]
6093: some more doc updates.
Tom Clegg [Tue, 26 May 2015 14:31:56 +0000 (10:31 -0400)]
Merge branch '6094-install-script-sigpipe' refs #6094
Tom Clegg [Tue, 26 May 2015 14:18:38 +0000 (10:18 -0400)]
6094: Propagate install script stderr+stdout to job log.
Brett Smith [Tue, 26 May 2015 00:32:19 +0000 (20:32 -0400)]
Merge branch '6095-arv-copy-preserve-object-order-wip'
Closes #6095, #6117.
Brett Smith [Fri, 22 May 2015 21:10:37 +0000 (17:10 -0400)]
6095: arv-copy preserves order of copied JSON.
This means arv-copy no longer loses the order of pipeline template
components, which makes for a nicer presentation in Workbench.
Other Python clients that would like to preserve the order of JSON
responses can use OrderedJsonModel the same way.
radhika [Mon, 25 May 2015 22:36:49 +0000 (18:36 -0400)]
6093: doc updates
Tom Clegg [Mon, 25 May 2015 17:25:22 +0000 (13:25 -0400)]
6087: Add big-manifest tests, with some finer-grained performance numbers on stderr.
Tom Clegg [Mon, 25 May 2015 14:35:02 +0000 (10:35 -0400)]
6087: Use HTTPClient's compression feature (instead of adding the
Content-Encoding header ourselves). Rename config knob to describe
purpose instead of implementation.
Tom Clegg [Mon, 25 May 2015 14:23:53 +0000 (10:23 -0400)]
6087: Compute portable_data_hash only once during check_signatures.
Tom Clegg [Mon, 25 May 2015 14:19:31 +0000 (10:19 -0400)]
6087: Use app-configured key by default for blob signing and verification.
Tom Clegg [Fri, 22 May 2015 21:42:17 +0000 (17:42 -0400)]
Merge branch '6094-install-script-sigpipe' (early part) refs #6094
radhika [Fri, 22 May 2015 20:40:59 +0000 (16:40 -0400)]
Merge branch 'master' into 6057-public-projects-page
radhika [Fri, 22 May 2015 20:39:57 +0000 (16:39 -0400)]
6057: add projects/public page, which lists publicly accessible projects.
Peter Amstutz [Fri, 22 May 2015 20:13:22 +0000 (16:13 -0400)]
6141: Remove hard-coded "https://" from "https://{{site.arvados_workbench_host}}" and require that arvados_workbench_host include the url scheme instead.
Tom Clegg [Fri, 22 May 2015 19:40:29 +0000 (15:40 -0400)]
6094: Consider arvados_sdk_version (not just script_version) when
deciding there's no need to extract or install anything.
Tom Clegg [Fri, 22 May 2015 19:39:00 +0000 (15:39 -0400)]
6094: Avoid SIGPIPE by consuming DATA section even when it's not needed.
Peter Amstutz [Fri, 22 May 2015 19:32:47 +0000 (15:32 -0400)]
6138: Added --domain to set ARVADOS_DOMAIN. Removed useless comments in apache2_vhost that mentioned qr1hi.
Ward Vandewege [Fri, 22 May 2015 14:03:01 +0000 (10:03 -0400)]
Add installation instructions for compute nodes; update the installation
instructions for crunch dispatcher.
No issue #
Tom Clegg [Thu, 21 May 2015 21:15:06 +0000 (17:15 -0400)]
Merge branch '6087-collection-timing' (early part) refs #6087 refs #6092
Tom Clegg [Thu, 21 May 2015 20:51:52 +0000 (16:51 -0400)]
6087: Get database time only once per manifest-signing/verifying event, rather than once per locator.
Brett Smith [Thu, 21 May 2015 20:06:16 +0000 (16:06 -0400)]
Update tutorial pipeline page to match new definition.
No issue #.
Peter Amstutz [Thu, 21 May 2015 19:00:10 +0000 (15:00 -0400)]
6090: Docker install uses local SSO server instead of auth.curoverse.com. Also
clean up references to dev.arvados to use @@ARVADOS_DOMAIN@@.
Brett Smith [Thu, 21 May 2015 18:23:46 +0000 (14:23 -0400)]
Update tutorial pipeline template definition.
This helps it run out of the box again.
No issue #.
radhika [Thu, 21 May 2015 16:09:07 +0000 (12:09 -0400)]
refs #6061
6061: set profiling_enabled to true in workbench application.default.yml for test env.
Ward Vandewege [Wed, 20 May 2015 15:29:29 +0000 (11:29 -0400)]
Documentation fix (quoting) for the 'Add an Arvados repository' page.
No issue #
Tom Clegg [Wed, 20 May 2015 14:54:00 +0000 (10:54 -0400)]
5748: Remove unused import. refs #5748
Tom Clegg [Wed, 20 May 2015 14:15:30 +0000 (10:15 -0400)]
5748: Remove runtime.GC() obsoleted by bufferpool. refs #5748
radhika [Wed, 20 May 2015 13:40:35 +0000 (09:40 -0400)]
closes #6064
Merge branch '6064-collection-output-of-perf-issue'
radhika [Wed, 20 May 2015 12:13:14 +0000 (08:13 -0400)]
integration_performance tests: add comment describing how to run the tests; also remove the ENV variable which is not needed
since the tests in this directory will not be part of regular test run because it is not a standard rails test directory.
radhika [Wed, 20 May 2015 03:00:21 +0000 (23:00 -0400)]
6064: rollback cache update so that it can be done in a separate branch.
radhika [Wed, 20 May 2015 02:32:25 +0000 (22:32 -0400)]
Merge branch 'master' into 6064-collection-output-of-perf-issue
Peter Amstutz [Tue, 19 May 2015 20:31:39 +0000 (16:31 -0400)]
Merge branch '6071-java-sdk-timeouts' closes #6071
Peter Amstutz [Tue, 19 May 2015 20:29:36 +0000 (16:29 -0400)]
6071: Bump up timeout to 120 seconds.
Radhika Chippada [Tue, 19 May 2015 19:26:07 +0000 (15:26 -0400)]
refs #6061
Merge branch '6061-intg-perf-tests'
Peter Amstutz [Tue, 19 May 2015 19:31:35 +0000 (15:31 -0400)]
Merge branch '6073-pycurl-version' refs #6073
Radhika Chippada [Tue, 19 May 2015 19:23:34 +0000 (15:23 -0400)]
6061: add workbench integration_performance test folder.
Peter Amstutz [Tue, 19 May 2015 19:20:16 +0000 (15:20 -0400)]
6071: Fix URL
Peter Amstutz [Tue, 19 May 2015 17:55:57 +0000 (13:55 -0400)]
6071: Refactor project organization a bit.
Peter Amstutz [Tue, 19 May 2015 17:52:51 +0000 (13:52 -0400)]
6071: Increase default timeout and enable retry support.
Peter Amstutz [Tue, 19 May 2015 16:54:37 +0000 (12:54 -0400)]
6073: Pycurl depends on latest in Arvados SDK setup.py
Radhika Chippada [Tue, 19 May 2015 03:24:46 +0000 (23:24 -0400)]
closes #4717
Merge branch '4717-read-only-keep-services-flag'
Radhika Chippada [Tue, 19 May 2015 03:11:59 +0000 (23:11 -0400)]
4717: rename writableRoots as writableLocalRoots.
Radhika Chippada [Tue, 19 May 2015 02:22:18 +0000 (22:22 -0400)]
Merge branch 'master' into 4717-read-only-keep-services-flag
Radhika Chippada [Tue, 19 May 2015 02:21:33 +0000 (22:21 -0400)]
closes #5720
Merge branch '5720-ajax-loading-error'
Radhika Chippada [Tue, 19 May 2015 02:09:21 +0000 (22:09 -0400)]
6064: display only 5 objects for which this collection is the output in source_summary.
Tom Clegg [Mon, 18 May 2015 17:36:27 +0000 (13:36 -0400)]
5720: Leave existing content in place (and schedule another reload) if a tab-refresh gets cancelled.
Nico Cesar [Fri, 15 May 2015 21:04:06 +0000 (17:04 -0400)]
Merge branch '5998-arvdock-bridge-option'
closes #5998
Nico Cesar [Fri, 15 May 2015 19:00:21 +0000 (15:00 -0400)]
$start_bridge -> $bridge
options modified
ip command refactored
refs #5998
Ward Vandewege [Fri, 15 May 2015 13:46:07 +0000 (09:46 -0400)]
Check in docker/sso/database.yml.in, forgotten in commit
ea7da293b0a10baef18cfc6e107c87a9c3b09546.
No issue #
Radhika Chippada [Fri, 15 May 2015 02:56:12 +0000 (22:56 -0400)]
Merge branch 'master' into 4717-read-only-keep-services-flag
Radhika Chippada [Fri, 15 May 2015 02:55:25 +0000 (22:55 -0400)]
4717: use keep_services -> read_only flag in python sdk.
Tom Clegg [Fri, 15 May 2015 02:11:49 +0000 (22:11 -0400)]
Merge branch '5748-max-buffers-leak-TC' refs #5748
Tom Clegg [Fri, 15 May 2015 02:10:02 +0000 (22:10 -0400)]
5748: gofmt fixes.
Tom Clegg [Fri, 15 May 2015 02:06:46 +0000 (22:06 -0400)]
5748: Time out leak tests after 20s.
Tom Clegg [Fri, 15 May 2015 01:52:12 +0000 (21:52 -0400)]
5748: Put() always takes a non-nil buf.
Brett Smith [Thu, 14 May 2015 22:32:02 +0000 (18:32 -0400)]
5915: Workbench tries the anonymous reader token first for collection wget listing.
This is necessary to make sure we provide a usable token to arv-get.
If we don't check the anonymous reader token first, we might decide
that another token is usable when in actuality, the reader token is
the one that worked. Closes #5915.
Peter Amstutz [Thu, 14 May 2015 21:01:13 +0000 (17:01 -0400)]
5748: Basic tests to check for bufferpool resource leaks
Peter Amstutz [Thu, 14 May 2015 20:02:43 +0000 (16:02 -0400)]
5748: Fix leaks in GetBlock error handling and PutBlock use of GetBlock where
buffers were not being returned to the buffer pool.
Radhika Chippada [Thu, 14 May 2015 16:39:42 +0000 (12:39 -0400)]
4717: just a couple minor tweaks
Radhika Chippada [Thu, 14 May 2015 16:32:12 +0000 (12:32 -0400)]
4717: writable roots in go sdk
Radhika Chippada [Thu, 14 May 2015 15:59:34 +0000 (11:59 -0400)]
Merge branch 'master' into 4717-read-only-keep-services-flag
Radhika Chippada [Thu, 14 May 2015 15:58:59 +0000 (11:58 -0400)]
closes #5645
Merge branch '5645-open-graph-meta-tags'
Radhika Chippada [Thu, 14 May 2015 15:56:49 +0000 (11:56 -0400)]
5645: updated comment
Radhika Chippada [Thu, 14 May 2015 13:23:25 +0000 (09:23 -0400)]
Merge branch 'master' into 5645-open-graph-meta-tags
Radhika Chippada [Thu, 14 May 2015 13:22:43 +0000 (09:22 -0400)]
5645: add og:site_name to the list of open graph meta tags added to the page.
Nancy Ouyang [Wed, 13 May 2015 21:56:53 +0000 (17:56 -0400)]
refs 5930: misc. small documentation fixes
Radhika Chippada [Wed, 13 May 2015 20:02:41 +0000 (16:02 -0400)]
4717: use keep_services -> read_only flag in go sdk.
Radhika Chippada [Tue, 12 May 2015 19:55:10 +0000 (15:55 -0400)]
4717: add read_only column for keep_services data model.
Nico Cesar [Tue, 12 May 2015 19:31:49 +0000 (15:31 -0400)]
Merge branch 'master' into 5998-arvdock-bridge-option
Nico Cesar [Tue, 12 May 2015 19:24:27 +0000 (15:24 -0400)]
trailing whitespaces
Nico Cesar [Tue, 12 May 2015 19:22:19 +0000 (15:22 -0400)]
fixing some trailing whitespaces
Ward Vandewege [Tue, 12 May 2015 19:12:46 +0000 (15:12 -0400)]
Fix sso docker container build, and enable local account creation for
this sso container uses.
No issue #
Nico Cesar [Tue, 12 May 2015 19:08:42 +0000 (15:08 -0400)]
initial version to have a --bridge parameter
also improves:
grep: The -P option is not supported if libpcre.so.3 is not available // Replaced -E making compatible
Radhika Chippada [Tue, 12 May 2015 17:50:31 +0000 (13:50 -0400)]
Merge branch 'master' into 5720-ajax-loading-error
Radhika Chippada [Tue, 12 May 2015 17:46:56 +0000 (13:46 -0400)]
5720: when jqxhr readyState == 0 or status == 0, instead of skipping show "Cancelled" message.
Radhika Chippada [Tue, 12 May 2015 17:39:05 +0000 (13:39 -0400)]
5720: when jqxhr readyState == 0 or status == 0, instead of skipping show "Cancelled" message.
Radhika Chippada [Tue, 12 May 2015 17:05:00 +0000 (13:05 -0400)]
5645: added open graph meta tags to page
Ward Vandewege [Tue, 12 May 2015 16:51:36 +0000 (12:51 -0400)]
Add instructions to generate assets to SSO installation page.
No issue #
Ward Vandewege [Tue, 12 May 2015 15:17:48 +0000 (11:17 -0400)]
Reorder SSO install documentation so that the rake db:setup call does
not fail because uuid_prefix and secret_token are not set yet.
No issue #
Ward Vandewege [Tue, 12 May 2015 14:48:26 +0000 (10:48 -0400)]
Even more SSO server install instructions.
No issue #
Ward Vandewege [Tue, 12 May 2015 14:27:51 +0000 (10:27 -0400)]
Update SSO server documentation to match current reality.
No issue #
Brett Smith [Mon, 11 May 2015 21:50:40 +0000 (17:50 -0400)]
Merge branch '5736-node-manager-easy-slot-cleanup-wip'
Refs #5736. Closes #5995.
Brett Smith [Mon, 11 May 2015 20:51:29 +0000 (16:51 -0400)]
5736: Node Manager cleans node records after shutting down a paired node.
This is an easy case to handle, and helps avoid exhausting SLURM
slot numbers.
Brett Smith [Mon, 11 May 2015 18:57:49 +0000 (14:57 -0400)]
5736: Fix typo in Node Manager test comments.
Brett Smith [Mon, 11 May 2015 21:35:58 +0000 (17:35 -0400)]
Merge branch '3793-clean-docker-images-wip'
Refs #3793. Closes #5857.
Brett Smith [Thu, 30 Apr 2015 13:19:15 +0000 (09:19 -0400)]
3793: Add Docker image cleaner service for compute nodes.
This service monitors Docker events. When a container is destroyed,
it deletes any images that are unused and exceed the configured
storage quota. This will prevent Docker images from growing
indefinitely on long-running compute nodes.
Peter Amstutz [Mon, 11 May 2015 21:11:01 +0000 (17:11 -0400)]
Merge branch '5992-keep-proxy-ignore-locator-hints' closes #5992
Peter Amstutz [Mon, 11 May 2015 20:38:23 +0000 (16:38 -0400)]
5992: keepproxy strips +K@{5} hints from locators before trying GET. +K@5-5-15
locators are preserved.
Radhika Chippada [Mon, 11 May 2015 17:33:53 +0000 (13:33 -0400)]
closes #3454
Merge branch '3454-default-docker-image'
projects / arvados.git / log