arvados.git
4 years ago16613: Create special-purpose ApiClient record for SystemRootToken
Peter Amstutz [Tue, 25 Aug 2020 20:03:38 +0000 (16:03 -0400)]
16613: Create special-purpose ApiClient record for SystemRootToken

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16613: Add test using SystemRootToken to create other tokens.
Peter Amstutz [Thu, 20 Aug 2020 22:10:43 +0000 (18:10 -0400)]
16613: Add test using SystemRootToken to create other tokens.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoMerge branch '16314-arvbox-testuserdb'
Tom Clegg [Wed, 26 Aug 2020 13:54:23 +0000 (09:54 -0400)]
Merge branch '16314-arvbox-testuserdb'

refs #16314

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16314: Remove SSO from arvbox docs.
Tom Clegg [Wed, 26 Aug 2020 13:51:37 +0000 (09:51 -0400)]
16314: Remove SSO from arvbox docs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16314: Merge branch 'master'
Tom Clegg [Tue, 25 Aug 2020 20:41:21 +0000 (16:41 -0400)]
16314: Merge branch 'master'

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '15964-fix-docs' refs #15964
Peter Amstutz [Tue, 25 Aug 2020 18:45:29 +0000 (14:45 -0400)]
Merge branch '15964-fix-docs' refs #15964

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15964: Remove qr1hi from a few more places. Delete unused includes.
Peter Amstutz [Tue, 25 Aug 2020 18:24:42 +0000 (14:24 -0400)]
15964: Remove qr1hi from a few more places.  Delete unused includes.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16314: Search both user and tmp paths for gems.
Tom Clegg [Tue, 25 Aug 2020 18:18:12 +0000 (14:18 -0400)]
16314: Search both user and tmp paths for gems.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '16678-login-tokens-lifetime-config'
Lucas Di Pentima [Tue, 25 Aug 2020 18:00:33 +0000 (15:00 -0300)]
Merge branch '16678-login-tokens-lifetime-config'
Closes #16678

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16678: Fixes minor doc issues.
Lucas Di Pentima [Tue, 25 Aug 2020 17:56:42 +0000 (14:56 -0300)]
16678: Fixes minor doc issues.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16678: Wording improvements, document how to create a token at cli
Peter Amstutz [Tue, 25 Aug 2020 17:44:10 +0000 (13:44 -0400)]
16678: Wording improvements, document how to create a token at cli

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16314: Fix bundle install recipe.
Tom Clegg [Tue, 25 Aug 2020 15:16:47 +0000 (11:16 -0400)]
16314: Fix bundle install recipe.

Previous code used incorrect bin path when GEM_HOME was set by caller,
e.g., arvbox.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '15886-remove-arv-web' into master
Nico Cesar [Tue, 25 Aug 2020 15:14:00 +0000 (11:14 -0400)]
Merge branch '15886-remove-arv-web' into master

closes #15886

Arvados-DCO-1.1-Signed-off-by: Nico Cesar <nico@curii.com>

4 years ago16314: Fix cleanup of temp/arvbox dirs that contain readonly dirs.
Tom Clegg [Tue, 25 Aug 2020 14:12:55 +0000 (10:12 -0400)]
16314: Fix cleanup of temp/arvbox dirs that contain readonly dirs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoRemove arv-web.py and documentation.
Nico Cesar [Tue, 25 Aug 2020 13:54:04 +0000 (09:54 -0400)]
Remove arv-web.py and documentation.

refs #15886

Arvados-DCO-1.1-Signed-off-by: Nico Cesar <nico@curii.com>

4 years agoFix a few gofmt warnings.
Ward Vandewege [Tue, 25 Aug 2020 02:11:09 +0000 (22:11 -0400)]
Fix a few gofmt warnings.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years ago16314: Serve login form in test login mode.
Tom Clegg [Mon, 24 Aug 2020 21:05:25 +0000 (17:05 -0400)]
16314: Serve login form in test login mode.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16678: Adds documentation about feature usage on the Admin section.
Lucas Di Pentima [Mon, 24 Aug 2020 19:47:47 +0000 (16:47 -0300)]
16678: Adds documentation about feature usage on the Admin section.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years agoReverts previously dropped commit that got reintroduced by a rebase.
Lucas Di Pentima [Mon, 24 Aug 2020 15:48:53 +0000 (12:48 -0300)]
Reverts previously dropped commit that got reintroduced by a rebase.
Refs #16470

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years agoMerge branch '16470-wb-rails-52'
Lucas Di Pentima [Mon, 24 Aug 2020 15:24:15 +0000 (12:24 -0300)]
Merge branch '16470-wb-rails-52'
Closes #16470

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years agoMerge branch '16535-s3'
Tom Clegg [Mon, 24 Aug 2020 15:23:18 +0000 (11:23 -0400)]
Merge branch '16535-s3'

refs #16535

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16470: Pins launchy gem to avoid requiring ruby >= 2.4.0
Lucas Di Pentima [Mon, 17 Aug 2020 19:39:01 +0000 (16:39 -0300)]
16470: Pins launchy gem to avoid requiring ruby >= 2.4.0

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16470: Fixes test failures caused by a change on ActiveModel::Dirty.
Lucas Di Pentima [Thu, 13 Aug 2020 18:01:42 +0000 (15:01 -0300)]
16470: Fixes test failures caused by a change on ActiveModel::Dirty.

This was a tough one to diagnose. The Dirty module introduced the usage of an
attribute mutation tracker, being disabled here for functional tests to start
working again.
This commit is based on: https://github.com/Dynamoid/dynamoid/pull/256

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16470: Removes unused cruft.
Lucas Di Pentima [Thu, 13 Aug 2020 17:42:27 +0000 (14:42 -0300)]
16470: Removes unused cruft.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16470: Cleans up config files.
Lucas Di Pentima [Mon, 10 Aug 2020 14:57:45 +0000 (11:57 -0300)]
16470: Cleans up config files.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16470: Removes deprecated 'secret_token' config key.
Lucas Di Pentima [Thu, 6 Aug 2020 17:33:52 +0000 (14:33 -0300)]
16470: Removes deprecated 'secret_token' config key.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16470: Updates & additions by running 'rails app:update'
Lucas Di Pentima [Thu, 6 Aug 2020 17:33:36 +0000 (14:33 -0300)]
16470: Updates & additions by running 'rails app:update'

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16470: Removes exception deprecated on rails 3.2
Lucas Di Pentima [Wed, 5 Aug 2020 19:57:26 +0000 (16:57 -0300)]
16470: Removes exception deprecated on rails 3.2

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16470: Upgrades to rails 5.2.
Lucas Di Pentima [Wed, 5 Aug 2020 19:53:13 +0000 (16:53 -0300)]
16470: Upgrades to rails 5.2.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16470: Fixes deprecation warning.
Lucas Di Pentima [Wed, 5 Aug 2020 19:43:54 +0000 (16:43 -0300)]
16470: Fixes deprecation warning.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16470: Applies changes from 'rails app:update'.
Lucas Di Pentima [Wed, 5 Aug 2020 18:39:47 +0000 (15:39 -0300)]
16470: Applies changes from 'rails app:update'.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16470: Pins the sprocket gem to avoid upgrading to 4.0, that causes issues.
Lucas Di Pentima [Wed, 5 Aug 2020 17:43:50 +0000 (14:43 -0300)]
16470: Pins the sprocket gem to avoid upgrading to 4.0, that causes issues.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16470: Upgrades rails to 5.1.7 on workbench.
Lucas Di Pentima [Wed, 5 Aug 2020 16:06:34 +0000 (13:06 -0300)]
16470: Upgrades rails to 5.1.7 on workbench.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16470: Fixes the last deprecation warnings.
Lucas Di Pentima [Fri, 24 Jul 2020 20:12:27 +0000 (17:12 -0300)]
16470: Fixes the last deprecation warnings.

It turned out that .lock!() is an ActiveRecord method, and I was confusing it
with Container::lock and ContainerRequest::lock.
Both lock! and with_lock methods need the record to be persisted or reloaded
explicitly.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16314: Remove SSO from arvbox.
Tom Clegg [Mon, 24 Aug 2020 14:06:50 +0000 (10:06 -0400)]
16314: Remove SSO from arvbox.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoFix more ineffassign warnings.
Ward Vandewege [Sun, 23 Aug 2020 19:06:44 +0000 (15:06 -0400)]
Fix more ineffassign warnings.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years agoFix more ineffassign warnings.
Ward Vandewege [Sat, 22 Aug 2020 15:37:27 +0000 (11:37 -0400)]
Fix more ineffassign warnings.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years agoMerge branch '16723-kill-vs-requeue'
Tom Clegg [Sat, 22 Aug 2020 01:54:54 +0000 (21:54 -0400)]
Merge branch '16723-kill-vs-requeue'

fixes #16723

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16678: Adds rake task to manage long lived tokens.
Lucas Di Pentima [Sat, 22 Aug 2020 01:44:49 +0000 (22:44 -0300)]
16678: Adds rake task to manage long lived tokens.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16678: Fixes mistake on previous merge.
Lucas Di Pentima [Fri, 21 Aug 2020 21:51:51 +0000 (18:51 -0300)]
16678: Fixes mistake on previous merge.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years agoMerge branch 'master' into 16678-login-tokens-lifetime-config
Lucas Di Pentima [Fri, 21 Aug 2020 21:09:09 +0000 (18:09 -0300)]
Merge branch 'master' into 16678-login-tokens-lifetime-config

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years agoFix config key case.
Tom Clegg [Fri, 21 Aug 2020 20:40:34 +0000 (16:40 -0400)]
Fix config key case.

refs #16314

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '16314-testuserdb'
Tom Clegg [Fri, 21 Aug 2020 20:39:34 +0000 (16:39 -0400)]
Merge branch '16314-testuserdb'

refs #16314

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16723: Fix stubPool KillContainer(): return false if not running.
Tom Clegg [Fri, 21 Aug 2020 20:11:46 +0000 (16:11 -0400)]
16723: Fix stubPool KillContainer(): return false if not running.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '16565-no-more-latest-docker-jobs-image'
Ward Vandewege [Fri, 21 Aug 2020 19:35:45 +0000 (15:35 -0400)]
Merge branch '16565-no-more-latest-docker-jobs-image'

closes #16565

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years ago16565: Merge branch 'master' into 16565-no-more-latest-docker-jobs-image
Ward Vandewege [Fri, 21 Aug 2020 19:35:00 +0000 (15:35 -0400)]
16565: Merge branch 'master' into 16565-no-more-latest-docker-jobs-image

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years ago16723: fix test to reflect new stub instance name.
Ward Vandewege [Fri, 21 Aug 2020 19:29:45 +0000 (15:29 -0400)]
16723: fix test to reflect new stub instance name.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years ago16723: Don't lock a requeued container while old crunch-runs exist.
Tom Clegg [Fri, 21 Aug 2020 15:30:04 +0000 (11:30 -0400)]
16723: Don't lock a requeued container while old crunch-runs exist.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16723: Fail test if a crunch-run stub is killed before finishing.
Tom Clegg [Fri, 21 Aug 2020 15:24:50 +0000 (11:24 -0400)]
16723: Fail test if a crunch-run stub is killed before finishing.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16678: Don't trust API clients from trusted URLs when TokenLifetime is set.
Lucas Di Pentima [Fri, 21 Aug 2020 14:59:01 +0000 (11:59 -0300)]
16678: Don't trust API clients from trusted URLs when TokenLifetime is set.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16723: Hold uuidLock in kill() to avoid racing with unlock+start.
Tom Clegg [Fri, 21 Aug 2020 14:42:49 +0000 (10:42 -0400)]
16723: Hold uuidLock in kill() to avoid racing with unlock+start.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16723: Fix double-container-running bug in test stub.
Tom Clegg [Fri, 21 Aug 2020 14:38:25 +0000 (10:38 -0400)]
16723: Fix double-container-running bug in test stub.

Two parts:

1. Update state to Complete before crunch-run exits, not after.

2. Don't call the "crashed while running" hook from the test stub
unless changing state to Running actually succeeded.

Also, call the "crashed while running" hook from the test stub if
changing state from Running to Complete fails.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16723: Use more readable instance IDs in tests.
Tom Clegg [Fri, 21 Aug 2020 13:24:02 +0000 (09:24 -0400)]
16723: Use more readable instance IDs in tests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoFix whitespace in run-tests.sh
Ward Vandewege [Fri, 21 Aug 2020 13:36:45 +0000 (09:36 -0400)]
Fix whitespace in run-tests.sh

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years ago16723: Reject invalid updates in API stub.
Tom Clegg [Fri, 21 Aug 2020 02:21:14 +0000 (22:21 -0400)]
16723: Reject invalid updates in API stub.

When dispatcher notices crunch-run has exited and the last known state
is Locked, it requeues the container. If crunch-run changed the
container state to Running before exiting (and dispatcher hasn't
noticed yet), dispatcher relies on RailsAPI/controller to reject the
requeue attempt.

Without this, the scheduler's state=Queued call was being accepted
even after losing a race to the stub's state=Running call,
occasionally causing a container to run twice and fail the randomized
simulation test.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16723: Fix wrong operation shown in debug log.
Tom Clegg [Fri, 21 Aug 2020 01:34:40 +0000 (21:34 -0400)]
16723: Fix wrong operation shown in debug log.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16535: Add S3 DeleteObject API.
Tom Clegg [Thu, 20 Aug 2020 20:24:19 +0000 (16:24 -0400)]
16535: Add S3 DeleteObject API.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '16625-add-azure-managed-image-support'
Ward Vandewege [Thu, 20 Aug 2020 19:39:26 +0000 (15:39 -0400)]
Merge branch '16625-add-azure-managed-image-support'

refs #16625

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years ago16625: fix tests.
Ward Vandewege [Thu, 20 Aug 2020 19:38:38 +0000 (15:38 -0400)]
16625: fix tests.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years agoMake sure examples work, lots of wordsmithing and reorganizing for clarity.
Peter Amstutz [Thu, 20 Aug 2020 17:46:58 +0000 (13:46 -0400)]
Make sure examples work, lots of wordsmithing and reorganizing for clarity.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16625: a-d-c: add support for disk images in an Azure Shared Image
Ward Vandewege [Thu, 20 Aug 2020 17:36:22 +0000 (13:36 -0400)]
16625: a-d-c: add support for disk images in an Azure Shared Image
       Gallery. Also make sure to clean up nics in every scenario where
       Create errors out.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years ago16314: Clean up long bool expressions.
Tom Clegg [Thu, 20 Aug 2020 14:32:41 +0000 (10:32 -0400)]
16314: Clean up long bool expressions.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '16625-add-azure-managed-image-support'
Ward Vandewege [Thu, 20 Aug 2020 14:29:36 +0000 (10:29 -0400)]
Merge branch '16625-add-azure-managed-image-support'

refs #16625

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years ago16625: Merge branch 'master' into 16625-add-azure-managed-image-support
Ward Vandewege [Thu, 20 Aug 2020 14:28:09 +0000 (10:28 -0400)]
16625: Merge branch 'master' into 16625-add-azure-managed-image-support

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years ago16314: Export Login.Test.Enable config.
Tom Clegg [Thu, 20 Aug 2020 14:26:29 +0000 (10:26 -0400)]
16314: Export Login.Test.Enable config.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16625: implement some more review feedback.
Ward Vandewege [Wed, 19 Aug 2020 21:43:47 +0000 (17:43 -0400)]
16625: implement some more review feedback.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years ago15964: Update and reorganize keep & CWL user guide docs
Peter Amstutz [Wed, 19 Aug 2020 21:29:19 +0000 (17:29 -0400)]
15964: Update and reorganize keep & CWL user guide docs

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15964: Fix link
Peter Amstutz [Wed, 19 Aug 2020 19:34:31 +0000 (15:34 -0400)]
15964: Fix link

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoPins oj gem on arvados-cli to avoid asking for ruby >= 2.4.
Lucas Di Pentima [Wed, 19 Aug 2020 19:23:36 +0000 (16:23 -0300)]
Pins oj gem on arvados-cli to avoid asking for ruby >= 2.4.
No issue #

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years agoMerge branch '15887-python-3-cookbook-fixes'
Ward Vandewege [Wed, 19 Aug 2020 18:33:28 +0000 (14:33 -0400)]
Merge branch '15887-python-3-cookbook-fixes'

closes #15887

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years ago15964: Change uuids to jutro, which is federated with pirca
Peter Amstutz [Wed, 19 Aug 2020 18:29:14 +0000 (14:29 -0400)]
15964: Change uuids to jutro, which is federated with pirca

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15887: fix Python cookbook snippets for Python 3
Ward Vandewege [Wed, 19 Aug 2020 16:58:58 +0000 (12:58 -0400)]
15887: fix Python cookbook snippets for Python 3

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years agoMerge branch '16698-debug-ports-arvbox' into master
Nico Cesar [Wed, 19 Aug 2020 15:58:31 +0000 (11:58 -0400)]
Merge branch '16698-debug-ports-arvbox' into master

closes #16698

Arvados-DCO-1.1-Signed-off-by: Nico Cesar <nico@curii.com>

4 years ago16565: stop pushing the 'latest' tag for our arvados/jobs docker image
Ward Vandewege [Wed, 19 Aug 2020 13:54:41 +0000 (09:54 -0400)]
16565: stop pushing the 'latest' tag for our arvados/jobs docker image

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years agoActively remove initializers/omniauth.rb in our rails package for the
Ward Vandewege [Wed, 19 Aug 2020 13:16:07 +0000 (09:16 -0400)]
Actively remove initializers/omniauth.rb in our rails package for the
API server. It has been a dangling symlink for a long time, and Rails
5.2 is no longer forgiving of that.

refs #16470

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years agoStop installing initializers/omniauth.rb in our rails package for the
Ward Vandewege [Wed, 19 Aug 2020 01:54:20 +0000 (21:54 -0400)]
Stop installing initializers/omniauth.rb in our rails package for the
API server. It has been a dangling symlink for a long time, and Rails
5.2 is no longer forgiving of that.

refs #16470

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years agoMerge branch '16535-s3'
Tom Clegg [Tue, 18 Aug 2020 20:47:15 +0000 (16:47 -0400)]
Merge branch '16535-s3'

refs #16535

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16314: Support "Test" authentication type.
Tom Clegg [Tue, 18 Aug 2020 20:37:58 +0000 (16:37 -0400)]
16314: Support "Test" authentication type.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoStop building the python pam package, that code was removed.
Ward Vandewege [Tue, 18 Aug 2020 20:08:21 +0000 (16:08 -0400)]
Stop building the python pam package, that code was removed.

refs #16580

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years ago16535: Update go.sum.
Tom Clegg [Tue, 18 Aug 2020 20:03:28 +0000 (16:03 -0400)]
16535: Update go.sum.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16535: Merge branch 'master'
Tom Clegg [Tue, 18 Aug 2020 20:02:56 +0000 (16:02 -0400)]
16535: Merge branch 'master'

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16535: Use package consts for http methods.
Tom Clegg [Tue, 18 Aug 2020 19:34:28 +0000 (15:34 -0400)]
16535: Use package consts for http methods.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16678: Sets token expiration at login time. Disabled by default.
Lucas Di Pentima [Tue, 18 Aug 2020 19:23:38 +0000 (16:23 -0300)]
16678: Sets token expiration at login time. Disabled by default.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16535: Return 400 instead of 500 when unable to mkdir.
Tom Clegg [Tue, 18 Aug 2020 18:40:40 +0000 (14:40 -0400)]
16535: Return 400 instead of 500 when unable to mkdir.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16535: Return "invalid arg" error when attempting mkdir in project.
Tom Clegg [Tue, 18 Aug 2020 18:35:12 +0000 (14:35 -0400)]
16535: Return "invalid arg" error when attempting mkdir in project.

Previously "not found" was returned, which was misleading.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '16580-remove-python2-packages'
Ward Vandewege [Tue, 18 Aug 2020 18:23:42 +0000 (14:23 -0400)]
Merge branch '16580-remove-python2-packages'

closes #16580

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years ago16580: Merge branch 'master' into 16580-remove-python2-packages
Ward Vandewege [Tue, 18 Aug 2020 18:22:52 +0000 (14:22 -0400)]
16580: Merge branch 'master' into 16580-remove-python2-packages

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years ago15964: Batch change qr1hi->zzzzz
Peter Amstutz [Tue, 18 Aug 2020 18:12:43 +0000 (14:12 -0400)]
15964: Batch change qr1hi->zzzzz

Change some uuids to point to new collections on pirca

Delete several unlinked, obsolete crunch1 documentation pages.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16625: implement review feedback.
Ward Vandewege [Tue, 18 Aug 2020 17:18:23 +0000 (13:18 -0400)]
16625: implement review feedback.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years ago16678: Adds Login.TokenLifetime config knob.
Lucas Di Pentima [Tue, 18 Aug 2020 15:05:55 +0000 (12:05 -0300)]
16678: Adds Login.TokenLifetime config knob.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago15964: Add a line about storing Dockerfiles in source control
Peter Amstutz [Mon, 29 Jun 2020 17:58:16 +0000 (13:58 -0400)]
15964: Add a line about storing Dockerfiles in source control

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15964: Rewrite docker tutorial to reflect current best practices
Peter Amstutz [Mon, 29 Jun 2020 17:56:11 +0000 (13:56 -0400)]
15964: Rewrite docker tutorial to reflect current best practices

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15964: Removing mentions of qr1hi from docs. Cleaning up user guide.
Peter Amstutz [Fri, 26 Jun 2020 21:41:48 +0000 (17:41 -0400)]
15964: Removing mentions of qr1hi from docs.  Cleaning up user guide.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15964: Delete long out of date (and unused) 'getting started' section
Peter Amstutz [Fri, 3 Jan 2020 15:10:47 +0000 (10:10 -0500)]
15964: Delete long out of date (and unused) 'getting started' section

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoMerge branch '16470-api-rails-52'
Lucas Di Pentima [Mon, 17 Aug 2020 19:48:31 +0000 (16:48 -0300)]
Merge branch '16470-api-rails-52'
Refs #16470

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years agoAdd link from upgrade notes to general release notes.
Peter Amstutz [Mon, 17 Aug 2020 18:51:04 +0000 (14:51 -0400)]
Add link from upgrade notes to general release notes.

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16470: Avoids crashing when running db:create in development mode.
Lucas Di Pentima [Mon, 17 Aug 2020 17:38:06 +0000 (14:38 -0300)]
16470: Avoids crashing when running db:create in development mode.

The 'preload_all_models' initializer is now run even when db:create is
called, so it avoids the database to be created on arvbox, for example,
because it attempts to access the database before being created.

This initializer was added 7 years ago and it now seems to not be needed
anymore, so I think it's the cleaner way to resolve this issue.

See: https://github.com/rails/rails/issues/32870

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years agoMerge branch '16631-add-test'
Ward Vandewege [Mon, 17 Aug 2020 15:32:12 +0000 (11:32 -0400)]
Merge branch '16631-add-test'

closes #16631

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years ago16631: Merge branch 'master' into 16631-add-test
Ward Vandewege [Mon, 17 Aug 2020 15:30:06 +0000 (11:30 -0400)]
16631: Merge branch 'master' into 16631-add-test

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

4 years agoMerge branch '16663-running-ctrs-unknown-workers'
Tom Clegg [Mon, 17 Aug 2020 15:00:08 +0000 (11:00 -0400)]
Merge branch '16663-running-ctrs-unknown-workers'

fixes #16663

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>