Peter Amstutz [Thu, 18 Apr 2019 19:28:50 +0000 (15:28 -0400)]
Merge branch '13996-new-api-config' refs #13996
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Thu, 18 Apr 2019 18:41:29 +0000 (14:41 -0400)]
Merge branch '15002-cancel-completed-container'
refs #15002
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Fri, 12 Apr 2019 13:55:33 +0000 (09:55 -0400)]
15002: Adds admin feature for cancelling completed containers
- Adds documentation and fixed dispatchcloud container test
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Lucas Di Pentima [Wed, 17 Apr 2019 21:31:40 +0000 (18:31 -0300)]
Merge branch '15109-logs-table-admin-docs'
Closes #15109
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Wed, 17 Apr 2019 21:28:56 +0000 (17:28 -0400)]
Merge branch '15002-container-permissions'
refs #15002
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 17 Apr 2019 21:23:08 +0000 (17:23 -0400)]
15002: Test invalid state changes, too.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 17 Apr 2019 20:30:11 +0000 (17:30 -0300)]
15109: Adds missing doc file.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 17 Apr 2019 20:29:08 +0000 (17:29 -0300)]
15109: Adds admin doc section on how to manage the api server's log table.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Wed, 17 Apr 2019 19:45:47 +0000 (15:45 -0400)]
15002: Fix container update permissions.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 17 Apr 2019 19:43:37 +0000 (15:43 -0400)]
Fix "failed" status leaking to subsequent attempt.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 17 Apr 2019 19:42:03 +0000 (15:42 -0400)]
Fix "failed" status leaking to subsequent attempt.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 12 Apr 2019 20:06:20 +0000 (16:06 -0400)]
Update arvbox documentation for devenv config, no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 12 Apr 2019 18:43:50 +0000 (14:43 -0400)]
Add gradle to arvbox, refs #14670
Also adds a new "devenv" config that starts a minimal container
environment with no services and $HOME bind mounted into the
container.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 12 Apr 2019 14:28:50 +0000 (10:28 -0400)]
13996: Improve docs a bit
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 11 Apr 2019 20:47:07 +0000 (16:47 -0400)]
13996: Enable ERB for application.yml and database.yml
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Thu, 11 Apr 2019 19:33:03 +0000 (15:33 -0400)]
Mention the credential expiry date option in the instructions to create Azure
credentials for Node Manager.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Thu, 11 Apr 2019 18:36:15 +0000 (14:36 -0400)]
13996: Documentation for config migration
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 11 Apr 2019 15:42:58 +0000 (11:42 -0400)]
13996: Tweak rake tasks
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 11 Apr 2019 14:34:14 +0000 (10:34 -0400)]
13996: Update rest of code for cleaner config access
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 11 Apr 2019 14:00:26 +0000 (10:00 -0400)]
13996: Don't override name of test db if one was provided in database.yml
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 10 Apr 2019 21:44:29 +0000 (17:44 -0400)]
13996: Update tests for cleaner config access
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 10 Apr 2019 21:07:08 +0000 (17:07 -0400)]
13996: Copy config into OrderedOptions for nicer access
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 10 Apr 2019 18:06:41 +0000 (14:06 -0400)]
13996: Move configuration load earlier, before database setup
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 9 Apr 2019 17:43:00 +0000 (13:43 -0400)]
13996: Fix legacy_jobs_api check
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 9 Apr 2019 16:14:19 +0000 (12:14 -0400)]
13996: Re-add symlink config.default.yml
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 9 Apr 2019 14:25:45 +0000 (10:25 -0400)]
13996: Fix tests.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Fri, 5 Apr 2019 17:09:00 +0000 (13:09 -0400)]
15042: handle config.default.yml in our packaging.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Fri, 5 Apr 2019 17:07:00 +0000 (13:07 -0400)]
13996: rename config.defaults.yml to config.default.yml, to remain consistent
with our existing default files.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Wed, 3 Apr 2019 20:41:58 +0000 (16:41 -0400)]
13996: Can now use database info from config.yml
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 2 Apr 2019 15:28:23 +0000 (11:28 -0400)]
13996: Refactor, create ConfigLoader class
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 26 Mar 2019 21:52:35 +0000 (17:52 -0400)]
13996: Adjust config:dump to dump active config
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 26 Mar 2019 21:34:30 +0000 (17:34 -0400)]
13996: Update comments
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 26 Mar 2019 21:10:00 +0000 (17:10 -0400)]
13996: Add rake config:diff
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 26 Mar 2019 20:31:06 +0000 (16:31 -0400)]
13996: Fix discovery document remoteHosts
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 26 Mar 2019 18:38:59 +0000 (14:38 -0400)]
13996: Explicitly get string representation of URLs
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 26 Mar 2019 18:07:53 +0000 (14:07 -0400)]
13996: Don't force check for GitInternalDir, breaks tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 26 Mar 2019 17:43:39 +0000 (13:43 -0400)]
13996: Unit tests pass
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 25 Mar 2019 20:39:23 +0000 (16:39 -0400)]
13996: Fixing test WIP
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 25 Mar 2019 15:28:33 +0000 (11:28 -0400)]
13996: Migrate tests to new config
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 22 Mar 2019 21:34:12 +0000 (17:34 -0400)]
13996: More config migrations, refactor some code into config_loader.rb
ActiveSupport::Duration is serialized properly when dumping config.
Non-empty string checks to use !.empty?
Because some configuration parameters could previously be either false
or a string, which are now just an empty string, but empty strings in
Ruby are truthy.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 22 Mar 2019 14:42:51 +0000 (10:42 -0400)]
13996: Parsing durations wip
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 21 Mar 2019 20:39:32 +0000 (16:39 -0400)]
13996: Migrate majority of defaults to config.defaults.yml
API server knows types of config parameters (needed for type coercion,
also useful for type checking.)
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 21 Mar 2019 16:38:09 +0000 (12:38 -0400)]
13996: More config updates
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 20 Mar 2019 21:33:51 +0000 (17:33 -0400)]
13996: Updating API server to use new config object WIP
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 19 Mar 2019 21:50:18 +0000 (17:50 -0400)]
13996: Migrating defaults to new config structure
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 19 Mar 2019 20:40:19 +0000 (16:40 -0400)]
13996: Config migration WIP
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Mon, 8 Apr 2019 14:14:15 +0000 (11:14 -0300)]
Merge branch '14873-api-rails5-upgrade'
Closes #14873
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 8 Apr 2019 14:05:11 +0000 (11:05 -0300)]
14873: Fixes performance test.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Sat, 6 Apr 2019 15:24:53 +0000 (12:24 -0300)]
14873: Updates dependency on our themes_for_rails fork.
The newer version eliminates cwa couple of deprecation warnings.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Sat, 6 Apr 2019 14:29:08 +0000 (11:29 -0300)]
14873: Upgrades missing config settings.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 5 Apr 2019 13:16:37 +0000 (10:16 -0300)]
14873: Fixes typo on schema file.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 5 Apr 2019 12:59:26 +0000 (09:59 -0300)]
14873: Adjusts latest API Server changes to be rails5 worthy.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Fri, 5 Apr 2019 12:26:15 +0000 (09:26 -0300)]
Merge branch 'master' into 14873-api-rails5-upgrade
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 4 Apr 2019 22:25:11 +0000 (19:25 -0300)]
14873: Fixes permission benchmark test
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 4 Apr 2019 21:24:50 +0000 (18:24 -0300)]
14873: Changes perftest with benchmark because of unidentified errors.
Didn't want to dilate the migraton any longer because of this. If it's
critical we could investigate further.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Thu, 4 Apr 2019 20:44:19 +0000 (16:44 -0400)]
check-exist uses default python (oops) refs #15040
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 4 Apr 2019 19:11:55 +0000 (16:11 -0300)]
14873: Migrated functional tests to be integration tests.
Making more than 1 request on functional tests produces issues hard
to debug. Instead, those kind of tests should be done as integration tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Thu, 4 Apr 2019 15:13:04 +0000 (11:13 -0400)]
Run check-exist.py in Docker container refs #15040
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Thu, 4 Apr 2019 14:54:49 +0000 (10:54 -0400)]
Merge branch '14484-collection-record-update'
refs #14484
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Thu, 4 Apr 2019 14:41:27 +0000 (10:41 -0400)]
Pin networkx because 2.2 is the last version to support Python 2.7 and 3.4
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 4 Apr 2019 13:50:44 +0000 (10:50 -0300)]
14873: Modifies failing tests for debugging purposes.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Thu, 4 Apr 2019 13:44:07 +0000 (09:44 -0400)]
Fix stale cached container state after successful Cancel.
Avoids needless retries between a successful Cancel and the next sync.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 3 Apr 2019 21:11:25 +0000 (17:11 -0400)]
Merge branch '14796-dispatchcloud-install-docs'
refs #14796
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Wed, 3 Apr 2019 20:42:25 +0000 (16:42 -0400)]
Merge remote-tracking branch 'origin/master' into 14484-collection-record-update
refs #14484
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Wed, 3 Apr 2019 20:24:35 +0000 (16:24 -0400)]
14796: Tweak example boot probe command.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 3 Apr 2019 20:23:17 +0000 (16:23 -0400)]
14796: Add Amazon EC2 configuration example.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Wed, 3 Apr 2019 20:20:26 +0000 (16:20 -0400)]
14484: Adds test for updating a collection with file stats and manifest changes
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Wed, 3 Apr 2019 20:01:26 +0000 (16:01 -0400)]
14484: Improves test coverage and attribute setting performance
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Wed, 3 Apr 2019 15:39:47 +0000 (11:39 -0400)]
14796: Add arvados-dispatch-cloud (experimental) to install docs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 3 Apr 2019 00:45:30 +0000 (21:45 -0300)]
14873: Adds JSONB columns to discovery doc.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 2 Apr 2019 23:26:17 +0000 (20:26 -0300)]
14873: Removes byebug debug call on test.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 2 Apr 2019 22:13:25 +0000 (19:13 -0300)]
14873: Fixes JSON custom types.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 2 Apr 2019 21:36:08 +0000 (18:36 -0300)]
14873: Custom JSON attributes that default to [] or {} when nil.
Previously we used the 'serialize' call to declare a JSONB column as a Hash
or Array and this had the side effect to default to an empty hash or array
when assigning nil (whether was reading from the database or passed as a param).
JSONB columns shouldn't be now declared as serialized because Rails would serialize
their contents twice, but not declaring them makes us lose their side effect.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 2 Apr 2019 21:30:11 +0000 (18:30 -0300)]
14873: Fixes nested params behavior on controller tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 2 Apr 2019 18:37:07 +0000 (15:37 -0300)]
14873: Updates test for fix deprecation warning.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 2 Apr 2019 18:18:17 +0000 (14:18 -0400)]
Give up if test services don't come up.
refs #15044
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 2 Apr 2019 18:11:55 +0000 (14:11 -0400)]
Remove dependency on jq.
refs #15044
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 2 Apr 2019 17:28:10 +0000 (13:28 -0400)]
Merge branch '15044-test-fixes'
closes #15044
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 2 Apr 2019 17:24:45 +0000 (13:24 -0400)]
15044: Sanity-check test services when bringing them up.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Tue, 2 Apr 2019 16:23:44 +0000 (13:23 -0300)]
14873: Reverts previous fixture changes.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Eric Biagiotti [Tue, 2 Apr 2019 15:49:29 +0000 (11:49 -0400)]
14484: Update collection model to overwrite file stats if a change is attempted
Also updates tests and documentation
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Tue, 2 Apr 2019 14:20:45 +0000 (10:20 -0400)]
15044: Require newer mocha.
Without this, old dev environments will not necessarily support the
non-deprecated usage (require 'mocha/minitest').
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 1 Apr 2019 18:58:40 +0000 (14:58 -0400)]
Merge branch 'arvbox-cert-docs' no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Mon, 1 Apr 2019 18:49:42 +0000 (14:49 -0400)]
14844: Adds collections controller tests and updates collection model tests
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Mon, 1 Apr 2019 16:28:12 +0000 (12:28 -0400)]
Update arvbox docs to describe how to install root cert
Remove slurm from arvbox
Arvbox cluster ids now always start with 'x' to be consistent with
cluster identifier guidelines for "experimental/local-only/private clusters"
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Mon, 1 Apr 2019 15:37:33 +0000 (11:37 -0400)]
14484: Moves the file count and total size callback to after_validation
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Mon, 1 Apr 2019 15:16:58 +0000 (11:16 -0400)]
Merge branch '14758-keepproxy-panic'
fixes #14758
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 1 Apr 2019 14:40:43 +0000 (10:40 -0400)]
14758: Fix panic on error reading request body.
The deferred inline func panics if status != 200 && err == nil.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 1 Apr 2019 15:08:53 +0000 (11:08 -0400)]
Merge branch '15050-limit-cdl-containers' closes #15050
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Sun, 31 Mar 2019 19:25:11 +0000 (15:25 -0400)]
Add another nil check to Azure driver.
refs #15007
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 29 Mar 2019 20:27:04 +0000 (16:27 -0400)]
15050: After waking up, check if the container was cancelled
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 29 Mar 2019 19:22:44 +0000 (15:22 -0400)]
15044: Fix sensitivity to group existence on the testing host.
Also fix some ruby warnings.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Fri, 29 Mar 2019 19:08:36 +0000 (15:08 -0400)]
14484: Moves test for grouping pdhs to its own file
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Fri, 29 Mar 2019 18:46:30 +0000 (14:46 -0400)]
14484: Moves pdh grouping into a lib module
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Peter Amstutz [Fri, 29 Mar 2019 18:28:01 +0000 (14:28 -0400)]
15050: Need to make sure to raise the semaphore when we're done
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 29 Mar 2019 18:06:22 +0000 (14:06 -0400)]
15050: Limit number of containers that crunch-dispatch-local runs at a time
So I can do some testing with submitting a huge number of containers
and not melt my machine.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Fri, 29 Mar 2019 17:54:28 +0000 (13:54 -0400)]
14484: Adds tests for Collection model and makes file attributes readonly
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Fri, 29 Mar 2019 17:36:51 +0000 (13:36 -0400)]
15044: Don't kill run-tests's keepproxy server in sdk/python tests.
This was causing an apps/workbench test
(CollectionUploadTest#test_Upload_non-empty_files) to fail when
running after sdk/python tests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 29 Mar 2019 15:44:51 +0000 (11:44 -0400)]
Fix assigning APIHost in NewClientFromConfig refs #15045
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 28 Mar 2019 20:21:26 +0000 (16:21 -0400)]
15044: Specify test database collation.
apps/workbench/test/controllers/projects_controller_test.rb:546 fails
with other collations.
Remove obsolete websocket comment.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
projects / arvados.git / log