arvados.git
8 years agoMerge branch 'master' into 6518-crunch2-dispatch-slurm
Peter Amstutz [Wed, 16 Mar 2016 00:02:30 +0000 (20:02 -0400)]
Merge branch 'master' into 6518-crunch2-dispatch-slurm

8 years ago6518: Merge in tests. Code cleanup around variable naming and comments.
Peter Amstutz [Wed, 16 Mar 2016 00:01:19 +0000 (20:01 -0400)]
6518: Merge in tests.  Code cleanup around variable naming and comments.

8 years agoMerge branch '8491-import-build-tools' refs #8491
Tom Clegg [Tue, 15 Mar 2016 20:09:20 +0000 (16:09 -0400)]
Merge branch '8491-import-build-tools' refs #8491

8 years ago8491: Add default target "make help"
Tom Clegg [Tue, 15 Mar 2016 20:09:03 +0000 (16:09 -0400)]
8491: Add default target "make help"

8 years agoProxy objects held in node manager dict of booting nodes should be regular proxy...
Peter Amstutz [Tue, 15 Mar 2016 13:34:36 +0000 (09:34 -0400)]
Proxy objects held in node manager dict of booting nodes should be regular proxy(), not
tell_proxy(). fixes #8691

8 years ago8203/8690: crunch-job uses `srun --nodes=1`.
Brett Smith [Tue, 15 Mar 2016 01:05:17 +0000 (21:05 -0400)]
8203/8690: crunch-job uses `srun --nodes=1`.

Using `srun --nodelist=[one node]` is not sufficient to ensure that
the command runs on a single node; only that it will at least be
allocated the requested node.  This is documented in the srun man
page, and we've observed additional node allocations in these calls.
When srun allocates additional nodes to the work, this can break later
parsing code in crunch-job.

Prefer --nodes, which sets a hard maximum on the number of nodes used.
We're already using this to run individual tasks (-N1), so it's a
known strategy.  Tested live before pushing.  Refs #8203, #8690.

8 years agoFix ineffective test case
Tom Clegg [Mon, 14 Mar 2016 19:54:32 +0000 (15:54 -0400)]
Fix ineffective test case

No issue #

8 years agoMerge branch '8079-lookup-token-uuid' closes #8079
Tom Clegg [Mon, 14 Mar 2016 19:06:02 +0000 (15:06 -0400)]
Merge branch '8079-lookup-token-uuid' closes #8079

8 years ago8079: Allow where(api_token: foo) and disallow where(api_token: ["contains", "f"])
Tom Clegg [Mon, 14 Mar 2016 19:04:12 +0000 (15:04 -0400)]
8079: Allow where(api_token: foo) and disallow where(api_token: ["contains", "f"])

8 years ago8079: Tidy up and document current_api_client_is_trusted.
Tom Clegg [Sat, 12 Mar 2016 22:32:17 +0000 (17:32 -0500)]
8079: Tidy up and document current_api_client_is_trusted.

8 years ago8079: Prevent users from changing their own token UUIDs.
Tom Clegg [Sun, 6 Mar 2016 19:50:22 +0000 (14:50 -0500)]
8079: Prevent users from changing their own token UUIDs.

8 years ago8079: Prevent users from looking up other users' tokens by UUID.
Tom Clegg [Fri, 4 Mar 2016 22:30:53 +0000 (17:30 -0500)]
8079: Prevent users from looking up other users' tokens by UUID.

Previous code was allowing any user logging in through a "trusted
client" (typically Workbench) to retrieve the secret token for any
ApiClientAuthorization whose UUID is known.  This won't be acceptable
when Container records start including those UUIDs.

Also added permission for any user to update (e.g., change expiration)
and delete their current token, even if the token wasn't assigned
through a "trusted client".

8 years agoReally fix cwl-runner tests this time. refs #8673
Peter Amstutz [Mon, 14 Mar 2016 17:19:56 +0000 (13:19 -0400)]
Really fix cwl-runner tests this time. refs #8673

8 years agoFix cwl-runner tests. refs #8673
Peter Amstutz [Mon, 14 Mar 2016 16:21:31 +0000 (12:21 -0400)]
Fix cwl-runner tests. refs #8673

8 years agoMerge branch '8673-cwl-runner-project-uuid' closes #8673
Peter Amstutz [Mon, 14 Mar 2016 14:20:11 +0000 (10:20 -0400)]
Merge branch '8673-cwl-runner-project-uuid' closes #8673

8 years agoFix proxy/tell_proxy usage in _begin_node_shutdown, refs #8678
Peter Amstutz [Fri, 11 Mar 2016 20:33:30 +0000 (15:33 -0500)]
Fix proxy/tell_proxy usage in _begin_node_shutdown, refs #8678

8 years ago8673: Fix --project-uuid for arv-keepdocker upload.
Peter Amstutz [Fri, 11 Mar 2016 19:37:13 +0000 (14:37 -0500)]
8673: Fix --project-uuid for arv-keepdocker upload.

8 years ago8491: Merge branch 'master' into 8491-import-build-tools
Tom Clegg [Fri, 11 Mar 2016 19:16:48 +0000 (14:16 -0500)]
8491: Merge branch 'master' into 8491-import-build-tools

8 years ago8491: 8222: Prohibit activesupport 4.2.6 so our gem can be installed with ruby <2.2.2
Tom Clegg [Wed, 9 Mar 2016 21:01:22 +0000 (16:01 -0500)]
8491: 8222: Prohibit activesupport 4.2.6 so our gem can be installed with ruby <2.2.2

8 years ago8491: Remove git-commit.version before running api server tests
Tom Clegg [Wed, 9 Mar 2016 18:36:49 +0000 (13:36 -0500)]
8491: Remove git-commit.version before running api server tests

8 years ago8491: --retry applies to do_install too
Tom Clegg [Wed, 9 Mar 2016 18:36:16 +0000 (13:36 -0500)]
8491: --retry applies to do_install too

8 years ago8491: move files from arvados-dev into their new places
Tom Clegg [Tue, 8 Mar 2016 21:37:42 +0000 (16:37 -0500)]
8491: move files from arvados-dev into their new places

8 years agoAdd 'build/' from commit '555b039609a3c8700c27767c255fdfe00eb42063'
Tom Clegg [Fri, 11 Mar 2016 18:40:36 +0000 (13:40 -0500)]
Add 'build/' from commit '555b039609a3c8700c27767c255fdfe00eb42063'

git-subtree-dir: build
git-subtree-mainline: d1de3281f023bfdbb62a172dec058caf2496224f
git-subtree-split: 555b039609a3c8700c27767c255fdfe00eb42063

8 years agoMerge branch '8345-llfuse-unpin' refs #8345
Tom Clegg [Fri, 11 Mar 2016 18:35:13 +0000 (13:35 -0500)]
Merge branch '8345-llfuse-unpin' refs #8345

8 years ago8345: Need "yum install -y" to reliably install rpm packages.
Tom Clegg [Fri, 11 Mar 2016 17:28:53 +0000 (12:28 -0500)]
8345: Need "yum install -y" to reliably install rpm packages.

8 years ago8345: 8491: Downgrade to llfuse 0.41 until #8345 gets sorted out (but keep the fuse...
Tom Clegg [Fri, 11 Mar 2016 07:15:10 +0000 (02:15 -0500)]
8345: 8491: Downgrade to llfuse 0.41 until #8345 gets sorted out (but keep the fuse backports).

8 years ago8673: Report pipeline instance uuid. Reuse jobs by default. Bump cwltool
Peter Amstutz [Fri, 11 Mar 2016 18:31:50 +0000 (13:31 -0500)]
8673: Report pipeline instance uuid.  Reuse jobs by default.  Bump cwltool
version dependency.

8 years agocloses #8558
radhika [Fri, 11 Mar 2016 14:46:47 +0000 (09:46 -0500)]
closes #8558
Merge branch '8558-cwl-propagate-resource-req'

8 years agoMerge branch 'master' into 8558-cwl-propagate-resource-req
radhika [Fri, 11 Mar 2016 14:45:17 +0000 (09:45 -0500)]
Merge branch 'master' into 8558-cwl-propagate-resource-req

Conflicts:
sdk/cwl/arvados_cwl/__init__.py

8 years ago8673: Typo fix for --project-uuid. Refactor main loop locking to address
Peter Amstutz [Fri, 11 Mar 2016 13:00:52 +0000 (08:00 -0500)]
8673: Typo fix for --project-uuid.  Refactor main loop locking to address
possible race condition causing workflow to end prematurely.

8 years ago6518: create sbatch and strigger commands using func declarations so that they can...
radhika [Fri, 11 Mar 2016 03:24:06 +0000 (22:24 -0500)]
6518: create sbatch and strigger commands using func declarations so that they can be overridden in tests.

8 years agoFix node manager to send ActorProxy instead of TellActorProxy to
Peter Amstutz [Thu, 10 Mar 2016 20:54:27 +0000 (15:54 -0500)]
Fix node manager to send ActorProxy instead of TellActorProxy to
ComputeNodeStateChangeBase subscribers.  refs #8543

8 years agoGet the go binary from a http url instead of https, so that our
Ward Vandewege [Thu, 10 Mar 2016 19:06:38 +0000 (14:06 -0500)]
Get the go binary from a http url instead of https, so that our
transparent proxy can cache it.

No issue #

8 years agoBuild package for arvados-cwl-runner.
Ward Vandewege [Thu, 10 Mar 2016 19:05:21 +0000 (14:05 -0500)]
Build package for arvados-cwl-runner.

refs #8671

8 years ago8558: when cores not found in resources, use default.
radhika [Thu, 10 Mar 2016 17:44:22 +0000 (12:44 -0500)]
8558: when cores not found in resources, use default.

8 years ago8673: Adding --project-uuid so resources are created in the specified project.
Peter Amstutz [Thu, 10 Mar 2016 16:57:57 +0000 (11:57 -0500)]
8673: Adding --project-uuid so resources are created in the specified project.

8 years agorefs #8558
radhika [Thu, 10 Mar 2016 16:39:40 +0000 (11:39 -0500)]
refs #8558
Merge branch '8558-add-cwl-jenkins'

8 years ago8558: compacted code
radhika [Thu, 10 Mar 2016 16:36:12 +0000 (11:36 -0500)]
8558: compacted code

8 years ago8636: Fix ArvPathMapper.reversemap to return a tuple as expected by caller.
Peter Amstutz [Wed, 9 Mar 2016 20:32:52 +0000 (15:32 -0500)]
8636: Fix ArvPathMapper.reversemap to return a tuple as expected by caller.
Improve job reuse by setting minimum_script_version.  refs #8636

8 years ago8558: update field names and ensure the tests pass
radhika [Wed, 9 Mar 2016 19:39:58 +0000 (14:39 -0500)]
8558: update field names and ensure the tests pass

8 years ago8558: add cwl to jenkins
radhika [Wed, 9 Mar 2016 19:39:30 +0000 (14:39 -0500)]
8558: add cwl to jenkins

8 years agoRemove duplicate environment variable.
Tom Clegg [Wed, 9 Mar 2016 18:58:29 +0000 (13:58 -0500)]
Remove duplicate environment variable.

Fixes tests failing after perl security fix.

"Previously on a duplicate, %ENV would have the last entry for the name
from environ[], but a typical getenv() would return the first entry."

refs:
* http://perl5.git.perl.org/perl.git/commitdiff/ae37b791a73a9e78dedb89fb2429d2628cf58076
* https://security-tracker.debian.org/tracker/CVE-2016-2381

No issue #

8 years agocloses #8508
radhika [Wed, 9 Mar 2016 16:43:18 +0000 (11:43 -0500)]
closes #8508
Merge branch 'wtsi-hgi-8508-datamanager-test-badpaths'

8 years ago8508: go fmt
radhika [Wed, 9 Mar 2016 16:41:57 +0000 (11:41 -0500)]
8508: go fmt

8 years agoMerge branch '8543-nodemanager-fewer-futures' closes #8543
Peter Amstutz [Tue, 8 Mar 2016 20:08:14 +0000 (15:08 -0500)]
Merge branch '8543-nodemanager-fewer-futures' closes #8543

8 years ago8543: Implement TellActorProxy which uses Actor.tell() instead of Actor.ask().
Peter Amstutz [Thu, 3 Mar 2016 18:54:30 +0000 (13:54 -0500)]
8543: Implement TellActorProxy which uses Actor.tell() instead of Actor.ask().
Implement BaseNodeMangerActor and TellableActorRef to provide tell_proxy().
Convert proxies in Node Manager that don't return Futures to use
TellActorProxy.

8 years agoMerge branch '8439-gitolite-nonff-perms-wip'
Brett Smith [Tue, 8 Mar 2016 15:27:02 +0000 (10:27 -0500)]
Merge branch '8439-gitolite-nonff-perms-wip'

Closes #8439, #8525.

8 years ago8439: API server suggests RW+ Gitolite permissions for writers.
Brett Smith [Tue, 23 Feb 2016 16:59:25 +0000 (11:59 -0500)]
8439: API server suggests RW+ Gitolite permissions for writers.

This lets users with write permission do non-fast-forward pushes.

8 years ago8558: Add test case for running ArvadosCommandTool
Peter Amstutz [Tue, 8 Mar 2016 15:10:32 +0000 (10:10 -0500)]
8558: Add test case for running ArvadosCommandTool

8 years ago8345: Uninstall old llfuse from reused virtualenv, if necessary.
Tom Clegg [Mon, 7 Mar 2016 19:28:10 +0000 (14:28 -0500)]
8345: Uninstall old llfuse from reused virtualenv, if necessary.

8 years ago8345: Merge branch 'master' into 8345-llfuse-unpin
Tom Clegg [Mon, 7 Mar 2016 05:47:10 +0000 (00:47 -0500)]
8345: Merge branch 'master' into 8345-llfuse-unpin

8 years ago8345: Fix up log messages to show which distro/package is being built/tested.
Tom Clegg [Mon, 7 Mar 2016 05:46:08 +0000 (00:46 -0500)]
8345: Fix up log messages to show which distro/package is being built/tested.

8 years ago8345: Build contextlib2 backport, needed by python-llfuse on debian7.
Tom Clegg [Mon, 7 Mar 2016 05:44:46 +0000 (00:44 -0500)]
8345: Build contextlib2 backport, needed by python-llfuse on debian7.

8 years agoFix crunch-run tests to pass reliably. refs #8015
Peter Amstutz [Fri, 4 Mar 2016 19:10:59 +0000 (14:10 -0500)]
Fix crunch-run tests to pass reliably. refs #8015

8 years ago8558: include min_scratch_mb_per_node in the keys propagated
radhika [Fri, 4 Mar 2016 18:39:03 +0000 (13:39 -0500)]
8558: include min_scratch_mb_per_node in the keys propagated

8 years agoMerge branch 'master' into 8558-cwl-propagate-resource-req
radhika [Fri, 4 Mar 2016 17:07:37 +0000 (12:07 -0500)]
Merge branch 'master' into 8558-cwl-propagate-resource-req

8 years agoCWL test select config, refs #8558
Peter Amstutz [Fri, 4 Mar 2016 16:23:02 +0000 (11:23 -0500)]
CWL test select config, refs #8558

8 years agoBugfix for CWL conformance test script, refs #8558
Peter Amstutz [Fri, 4 Mar 2016 16:19:14 +0000 (11:19 -0500)]
Bugfix for CWL conformance test script, refs #8558

8 years agoSelf test script for running CWL conformance tests on arvados-cwl-runner
Peter Amstutz [Fri, 4 Mar 2016 16:02:44 +0000 (11:02 -0500)]
Self test script for running CWL conformance tests on arvados-cwl-runner
against Arvados arvbox instance. refs #8558

8 years agoRename arvbox command 'reboot' to 'rebuild' no issue #
Peter Amstutz [Fri, 4 Mar 2016 15:42:01 +0000 (10:42 -0500)]
Rename arvbox command 'reboot' to 'rebuild' no issue #

8 years agoarvbox "ready" script correctly waits for all sdk packages to be ready. no issue #
Peter Amstutz [Fri, 4 Mar 2016 15:17:44 +0000 (10:17 -0500)]
arvbox "ready" script correctly waits for all sdk packages to be ready. no issue #

8 years agoAdd arvados-cwl-runner to arvbox sdk install script. no issue #
Peter Amstutz [Fri, 4 Mar 2016 15:11:40 +0000 (10:11 -0500)]
Add arvados-cwl-runner to arvbox sdk install script. no issue #

8 years agoArvbox improvements: add "pipe", "cat", "ls". Report both container IP address
Peter Amstutz [Fri, 4 Mar 2016 15:01:06 +0000 (10:01 -0500)]
Arvbox improvements: add "pipe", "cat", "ls".  Report both container IP address
and published arvbox host.  Update install page with new commands.  no issue #

8 years ago8558: add min_cores_per_node and min_ram_mb_per_node to runtime_constraints from...
radhika [Fri, 4 Mar 2016 13:08:38 +0000 (08:08 -0500)]
8558: add min_cores_per_node and min_ram_mb_per_node to runtime_constraints from builder resources

8 years agocloses #8497
radhika [Thu, 3 Mar 2016 22:07:06 +0000 (17:07 -0500)]
closes #8497
Merge branch 'wtsi-hgi-8497-datamanager-batchsize-1000'

8 years agoMerge branch '8497-datamanager-batchsize-1000' of https://github.com/wtsi-hgi/arvados...
radhika [Thu, 3 Mar 2016 22:03:05 +0000 (17:03 -0500)]
Merge branch '8497-datamanager-batchsize-1000' of https://github.com/wtsi-hgi/arvados into wtsi-hgi-8497-datamanager-batchsize-1000

8 years agomakes -collection-batch-size an option as requested by @rchippada
Joshua Randall [Thu, 3 Mar 2016 21:33:14 +0000 (21:33 +0000)]
makes -collection-batch-size an option as requested by @rchippada

8 years agoMerge branch '8620-better-README' closes #8620
Peter Amstutz [Thu, 3 Mar 2016 20:28:34 +0000 (15:28 -0500)]
Merge branch '8620-better-README' closes #8620

8 years agoMerge branch '8488-cwl-crunchrunner-collection' closes #8488
Peter Amstutz [Thu, 3 Mar 2016 18:54:51 +0000 (13:54 -0500)]
Merge branch '8488-cwl-crunchrunner-collection' closes #8488

8 years ago8345: Add build-essential to ubuntu1204 package-building image
Tom Clegg [Thu, 3 Mar 2016 18:02:41 +0000 (13:02 -0500)]
8345: Add build-essential to ubuntu1204 package-building image

8 years ago8620: Add note about arvbox publicdemo mode and link to Hacking page.
Peter Amstutz [Thu, 3 Mar 2016 17:21:37 +0000 (12:21 -0500)]
8620: Add note about arvbox publicdemo mode and link to Hacking page.

8 years ago8620: Remove unnecessary "Arvados" header.
Peter Amstutz [Thu, 3 Mar 2016 16:38:04 +0000 (11:38 -0500)]
8620: Remove unnecessary "Arvados" header.

8 years ago8620: Link to Hacking Arvados page under Development.
Peter Amstutz [Thu, 3 Mar 2016 16:37:30 +0000 (11:37 -0500)]
8620: Link to Hacking Arvados page under Development.

8 years ago8620: Crunch is a cluster and HPC workflow engine.
Peter Amstutz [Thu, 3 Mar 2016 15:48:51 +0000 (10:48 -0500)]
8620: Crunch is a cluster and HPC workflow engine.

8 years ago8620: Add link to cloud.curoverse.com, and mention using arvbox for development
Peter Amstutz [Thu, 3 Mar 2016 15:46:51 +0000 (10:46 -0500)]
8620: Add link to cloud.curoverse.com, and mention using arvbox for development
testing.

8 years agoMerge branch '8508-datamanager-test-badpaths' of https://github.com/wtsi-hgi/arvados...
radhika [Thu, 3 Mar 2016 15:38:11 +0000 (10:38 -0500)]
Merge branch '8508-datamanager-test-badpaths' of https://github.com/wtsi-hgi/arvados into wtsi-hgi-8508-datamanager-test-badpaths

8 years ago8620: Better onramp in README.md so people visiting Github page for Arvados get
Peter Amstutz [Thu, 3 Mar 2016 15:24:03 +0000 (10:24 -0500)]
8620: Better onramp in README.md so people visiting Github page for Arvados get
a sense of what it's about and can try out arvbox.

8 years agoAdd git clone to arvbox quickstart doc. refs #8230
Peter Amstutz [Thu, 3 Mar 2016 14:58:24 +0000 (09:58 -0500)]
Add git clone to arvbox quickstart doc.  refs #8230

8 years ago8488: Fix reverse mapping for references to input files from keep.
Peter Amstutz [Thu, 3 Mar 2016 01:11:04 +0000 (20:11 -0500)]
8488: Fix reverse mapping for references to input files from keep.

8 years ago8345: Build and install new fuse libs before building llfuse.
Tom Clegg [Thu, 3 Mar 2016 01:05:26 +0000 (20:05 -0500)]
8345: Build and install new fuse libs before building llfuse.

8 years agoMerge branch '7263-batch-task-lookup' closes #7263
Tom Clegg [Wed, 2 Mar 2016 21:40:05 +0000 (16:40 -0500)]
Merge branch '7263-batch-task-lookup' closes #7263

8 years ago7263: Let arvados library do the json encoding.
Tom Clegg [Wed, 2 Mar 2016 21:35:47 +0000 (16:35 -0500)]
7263: Let arvados library do the json encoding.

8 years ago7263: Check new tasks after a task completes, even if others failed in the same reapc...
Tom Clegg [Wed, 2 Mar 2016 21:25:55 +0000 (16:25 -0500)]
7263: Check new tasks after a task completes, even if others failed in the same reapchildren().

8 years ago7263: Updates reapchildren to perform API query for new tasks in batches
Joshua Randall [Mon, 29 Feb 2016 23:10:47 +0000 (23:10 +0000)]
7263: Updates reapchildren to perform API query for new tasks in batches

Conflicts:
sdk/cli/bin/crunch-job

8 years agocloses #7399
radhika [Wed, 2 Mar 2016 18:22:06 +0000 (13:22 -0500)]
closes #7399
Merge branch '7399-log-throttling'

8 years ago7399: do not handle crunchstat stderr partial line segments in this story.
radhika [Wed, 2 Mar 2016 18:19:24 +0000 (13:19 -0500)]
7399: do not handle crunchstat stderr partial line segments in this story.

8 years ago7399: use regexp to look for partial line segments.
radhika [Wed, 2 Mar 2016 17:55:21 +0000 (12:55 -0500)]
7399: use regexp to look for partial line segments.

8 years agoMerge branch '8099-babysit-all-srun' closes #8099
Tom Clegg [Wed, 2 Mar 2016 17:16:27 +0000 (12:16 -0500)]
Merge branch '8099-babysit-all-srun' closes #8099

8 years agoMerge branch 'master' into 8099-babysit-all-srun
Tom Clegg [Wed, 2 Mar 2016 17:16:19 +0000 (12:16 -0500)]
Merge branch 'master' into 8099-babysit-all-srun

Conflicts:
sdk/cli/bin/crunch-job

8 years ago8099: Remove duplicated line
Tom Clegg [Wed, 2 Mar 2016 17:14:08 +0000 (12:14 -0500)]
8099: Remove duplicated line

8 years agoMerge branch '8343-cgroup-root' closes #8343
Tom Clegg [Wed, 2 Mar 2016 16:08:19 +0000 (11:08 -0500)]
Merge branch '8343-cgroup-root' closes #8343

8 years ago8343: Allow overriding -cgroup-root=/sys/fs/cgroup via crunch-dispatch run script.
Tom Clegg [Wed, 2 Mar 2016 16:05:19 +0000 (11:05 -0500)]
8343: Allow overriding -cgroup-root=/sys/fs/cgroup via crunch-dispatch run script.

8 years ago8488: Match line beginnings
Peter Amstutz [Wed, 2 Mar 2016 15:54:53 +0000 (10:54 -0500)]
8488: Match line beginnings

8 years agoBuild arvbox instead of the old docker images.
Ward Vandewege [Wed, 2 Mar 2016 15:35:55 +0000 (10:35 -0500)]
Build arvbox instead of the old docker images.

refs #8231

8 years ago8345: Use a separate vendor/cache for each OS target. See dev.arvados.org/issues...
Tom Clegg [Wed, 2 Mar 2016 15:34:58 +0000 (10:34 -0500)]
8345: Use a separate vendor/cache for each OS target. See dev.arvados.org/issues/8345#note-11

8 years agoRemove arvbox from arvados-dev (now in arvados/tools) refs #8231
Peter Amstutz [Wed, 2 Mar 2016 15:24:08 +0000 (10:24 -0500)]
Remove arvbox from arvados-dev (now in arvados/tools) refs #8231

8 years agoMerge branch '8231-publish-arvbox' closes #8231
Peter Amstutz [Wed, 2 Mar 2016 15:20:56 +0000 (10:20 -0500)]
Merge branch '8231-publish-arvbox' closes #8231

8 years ago8231: Convert arvbox documentation to textile. Update root Arvados README to
Peter Amstutz [Wed, 2 Mar 2016 15:10:03 +0000 (10:10 -0500)]
8231: Convert arvbox documentation to textile.  Update root Arvados README to
mention Arvbox.

8 years ago8231: Fix nginx logging issue
Peter Amstutz [Wed, 2 Mar 2016 14:38:56 +0000 (09:38 -0500)]
8231: Fix nginx logging issue

8 years ago8488: Set docker_outdir to get correct outdir in command line. Bump cwltool
Peter Amstutz [Wed, 2 Mar 2016 13:46:41 +0000 (08:46 -0500)]
8488: Set docker_outdir to get correct outdir in command line.  Bump cwltool
dependency to get better workflow iteration.