Tom Clegg [Thu, 5 Mar 2020 21:46:42 +0000 (16:46 -0500)]
Merge branch '16219-insufficient-scratch'
fixes #16219
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 5 Mar 2020 21:42:39 +0000 (16:42 -0500)]
16219: Test populated container fields.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Thu, 5 Mar 2020 21:27:33 +0000 (16:27 -0500)]
Pin version of launchy gem while we still support Ruby 2.3
refs #16215
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Thu, 5 Mar 2020 19:44:22 +0000 (14:44 -0500)]
16219: Load all fields needed to compute node size.
Without ContainerImage and Mounts, the scratch size requirement can't
be computed correctly.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 4 Mar 2020 22:15:10 +0000 (17:15 -0500)]
Fix type of ContainerRequestState consts.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Wed, 4 Mar 2020 20:17:49 +0000 (15:17 -0500)]
Fix error reporting bug in User.redirect_to
Also improve error logging when User.register fails.
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 3 Mar 2020 21:17:38 +0000 (16:17 -0500)]
Remove Gemfile.lock from login-sync
no issue #
To be consistent with sdk/ruby sdk/cli behavior.
There's a circular dependency where the version number of the gem is
embedded in Gemfile.lock, but the version number is derived from the
git commit timestamp, so when it updates Gemfile.lock it creates a new
version, which requires a updating Gemfile.lock, and so on.
However, unlike the Ruby on Rails deb/rpm packages, when we create
gems (dev or production) it does not include Gemfile.lock, so there's
no benefit to having it checked in.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 3 Mar 2020 20:34:05 +0000 (15:34 -0500)]
Ruby gems respect ARVADOS_BUILDING_VERSION
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 2 Mar 2020 19:05:06 +0000 (14:05 -0500)]
Merge branch '16169-cwl-hints' refs #16169
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 28 Feb 2020 17:07:35 +0000 (12:07 -0500)]
16169: Monkey patch load_tool.resolve_and_validate_document to fix bug
There is a bug in upstream cwltool where the version updater needs to
replace the document fragments in the loader index with the updated
ones, but actually it only does it for the root document. Normally we
just fix the bug in upstream but that's challenging because current
cwltool dropped support for Python 2.7 and we're still supporting py2
in Arvados 2.0 (although py2 support will most likely be dropped in
Arvados 2.1). Making a bugfix fork comes with its own
complications (it would need to be added to PyPi) so monkey patching
is the least disruptive fix (and is relatively safe because our
cwltool dependency is pinned to a specific version). This
should be removed as soon as a bugfix goes into upstream cwltool and
we upgrade to it.
Lucas Di Pentima [Wed, 26 Feb 2020 23:58:59 +0000 (20:58 -0300)]
16169: Adds test exposing the requirement propagation bug.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Tom Clegg [Mon, 2 Mar 2020 17:45:28 +0000 (12:45 -0500)]
Use new version tag to avoid tag whose checksum changed.
refs #12308
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Lucas Di Pentima [Fri, 28 Feb 2020 21:24:37 +0000 (18:24 -0300)]
Merge branch '14990-support-email-exported-config'
Refs #14990
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Fri, 28 Feb 2020 18:40:32 +0000 (15:40 -0300)]
14990: Adds exported config section on the API documentation.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Fri, 28 Feb 2020 18:28:22 +0000 (15:28 -0300)]
14990: Exports Mail.SupportEmailAddress config so that WB2 can use it.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Peter Amstutz [Thu, 27 Feb 2020 20:48:37 +0000 (15:48 -0500)]
Merge branch '16202-shell-suffix' refs #16202
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 27 Feb 2020 20:46:47 +0000 (15:46 -0500)]
Merge branch '16177-trust-all-content'
refs #16177
refs #16151
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 27 Feb 2020 18:56:49 +0000 (13:56 -0500)]
Nodemanager and crunchstat-summary sync with pysdk version
refs #16151
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 27 Feb 2020 18:38:37 +0000 (13:38 -0500)]
16177: Don't run pip --quiet to get more information about what it is doing
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 27 Feb 2020 17:21:34 +0000 (12:21 -0500)]
16177: Fix tests, test server config now has TrustAllContent: false
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 27 Feb 2020 15:17:51 +0000 (10:17 -0500)]
Merge branch '16177-trust-all-content' refs #16177
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 26 Feb 2020 21:12:22 +0000 (16:12 -0500)]
16202: Add Workbench.SSHHelpHostSuffix
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 26 Feb 2020 20:31:58 +0000 (15:31 -0500)]
16177: Use correct config item Collections.TrustAllContent
Also added fallback error handler, if view or download link doesn't
work, render error text (otherwise you get a very confusing Rails
crash page).
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 26 Feb 2020 19:16:14 +0000 (14:16 -0500)]
arvbox now installs python tools with python3
Also adjust 'geo' config for local/public mode.
refs #12409
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Ward Vandewege [Wed, 26 Feb 2020 18:49:28 +0000 (13:49 -0500)]
Fix web shell.
refs #16203
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>
Tom Clegg [Wed, 26 Feb 2020 15:31:10 +0000 (10:31 -0500)]
Merge branch '16172-remote-token-validation'
fixes #16172
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 25 Feb 2020 18:26:30 +0000 (13:26 -0500)]
Fix wrong token expected at keepproxy health check endpoint.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 25 Feb 2020 17:14:32 +0000 (12:14 -0500)]
15954: Propagate remote param.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 24 Feb 2020 20:35:59 +0000 (15:35 -0500)]
Merge branch '16101-logout'
fixes #16101
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 20 Feb 2020 20:43:50 +0000 (15:43 -0500)]
16101: Redirect logout to Workbench if return_to param missing.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Lucas Di Pentima [Wed, 19 Feb 2020 21:41:39 +0000 (18:41 -0300)]
Merge branch '15781-multi-value-property-search'
Refs #15781
Lucas Di Pentima [Wed, 19 Feb 2020 18:06:25 +0000 (15:06 -0300)]
15781: Adds test proving that 'contains' does case-sensitive matching.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Ward Vandewege [Tue, 18 Feb 2020 20:29:53 +0000 (15:29 -0500)]
Merge branch '16157-adc-metrics'
closes #16157
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>
Ward Vandewege [Fri, 14 Feb 2020 19:54:23 +0000 (14:54 -0500)]
arvados-dispatch-cloud: metrics improvement
Expose instance_type in the instances_total Prometheus metric.
refs #16157
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>
Peter Amstutz [Tue, 18 Feb 2020 15:11:17 +0000 (10:11 -0500)]
Bump arvbox Go version, set wb2 version
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Mon, 17 Feb 2020 18:55:27 +0000 (13:55 -0500)]
16101: Handle logout without sso-provider.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 17 Feb 2020 16:36:58 +0000 (11:36 -0500)]
Merge branch '16100-mime-types'
fixes #16100
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Sat, 15 Feb 2020 21:47:34 +0000 (16:47 -0500)]
16100: Move test to integration suite to avoid logging errors.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Ward Vandewege [Fri, 14 Feb 2020 22:45:39 +0000 (17:45 -0500)]
Update maintainer for our Docker build and test images.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>
Tom Clegg [Fri, 14 Feb 2020 20:13:15 +0000 (15:13 -0500)]
Merge branch '12308-cgofuse'
refs #12308
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Fri, 14 Feb 2020 20:12:40 +0000 (15:12 -0500)]
Merge branch '16039-fuse-forward-slash-sub'
fixes #16039
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Fri, 14 Feb 2020 18:48:41 +0000 (13:48 -0500)]
Merge branch '16080-github' refs #16080
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Fri, 14 Feb 2020 18:42:48 +0000 (13:42 -0500)]
12308: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Fri, 14 Feb 2020 18:40:01 +0000 (13:40 -0500)]
16100: Add package dependency for /etc/mime.types.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Fri, 14 Feb 2020 18:39:38 +0000 (13:39 -0500)]
16100: Log a warning if /etc/mime.types is missing.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Fri, 14 Feb 2020 18:25:30 +0000 (13:25 -0500)]
16100: Test content-type detection.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Fri, 14 Feb 2020 15:36:44 +0000 (10:36 -0500)]
16080: Try more compact formatting
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 14 Feb 2020 15:19:00 +0000 (10:19 -0500)]
16080: Align descriptive text with new website
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Fri, 14 Feb 2020 00:22:45 +0000 (19:22 -0500)]
Merge branch '16152-keep-balance-http-crash'
fixes #16152
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Thu, 13 Feb 2020 22:51:11 +0000 (17:51 -0500)]
16080: Fix commonwl.org link
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 13 Feb 2020 22:49:39 +0000 (17:49 -0500)]
16080: README links code of conduct.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 13 Feb 2020 22:44:11 +0000 (17:44 -0500)]
16080: Tweak readme some more
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 13 Feb 2020 22:32:04 +0000 (17:32 -0500)]
16080: More tweaks on CONTRIBUTING and README
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 13 Feb 2020 22:10:21 +0000 (17:10 -0500)]
16080: Add dax
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 13 Feb 2020 22:05:19 +0000 (17:05 -0500)]
16080: Writeup of CONTRIBUTING.md
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Thu, 13 Feb 2020 20:58:09 +0000 (15:58 -0500)]
16152: Fix nil http handler and ignored config args.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 13 Feb 2020 07:29:22 +0000 (02:29 -0500)]
16100: Fix bogus timing stats for empty responses.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 13 Feb 2020 02:50:07 +0000 (21:50 -0500)]
16039: Touch python clients so they run tests with the latest SDK.
Otherwise, "pip install" (during "install services/nodemanager", for
example) downgrades the SDK from the current version to the latest
version published on pip, and all test suites run with that version,
instead of the version we think we're testing.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 13 Feb 2020 02:47:44 +0000 (21:47 -0500)]
16039: Install missing python dep.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Wed, 12 Feb 2020 21:35:52 +0000 (16:35 -0500)]
16080: WIP adding code of conduct, improve community docs
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Lucas Di Pentima [Wed, 12 Feb 2020 18:59:11 +0000 (15:59 -0300)]
15781: Bump API revision number to signal new feature.
The feature would be the 'contains' filter operator. Workbench2 should
not try to use it on older Arvados clusters.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Tom Clegg [Wed, 12 Feb 2020 18:49:50 +0000 (13:49 -0500)]
16039: Use current python sdk in py3 tests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 12 Feb 2020 17:03:20 +0000 (12:03 -0500)]
12308: Fix typo.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 12 Feb 2020 17:02:39 +0000 (12:02 -0500)]
12308: Clarify chmod behavior.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 12 Feb 2020 16:39:18 +0000 (11:39 -0500)]
12308: Use RWMutex for filehandle map.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 12 Feb 2020 15:48:05 +0000 (10:48 -0500)]
16039: Fix & add test for sanitized/unsanitized name conflict.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 12 Feb 2020 15:37:48 +0000 (10:37 -0500)]
16039: Accommodate API servers with no config export.
Add more checks in test cases.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Wed, 12 Feb 2020 03:37:44 +0000 (22:37 -0500)]
Merge branch '16144-nil-checks' refs #16144
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Lucas Di Pentima [Tue, 11 Feb 2020 23:14:42 +0000 (20:14 -0300)]
16144: Adds more checks and simplifies nested conditionals.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 11 Feb 2020 22:22:24 +0000 (19:22 -0300)]
16144: Fixes the bug.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 11 Feb 2020 22:21:09 +0000 (19:21 -0300)]
16144: Adds tests exposing the bug.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 11 Feb 2020 17:57:54 +0000 (14:57 -0300)]
Merge branch '16141-gosdk-missing-fields'
Closes #16141
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 11 Feb 2020 17:10:48 +0000 (14:10 -0300)]
16141: Fixes User type, adjusts fixture to make the test pass.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 11 Feb 2020 16:41:41 +0000 (13:41 -0300)]
16141: Updates the test to use a different, more complete collection fixture.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 11 Feb 2020 16:41:17 +0000 (13:41 -0300)]
16141: Fixes GoSDK's Collection type.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Tom Clegg [Tue, 11 Feb 2020 15:58:28 +0000 (10:58 -0500)]
16039: Obey ForwardSlashNameSubstitution config in arv-mount.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Lucas Di Pentima [Mon, 10 Feb 2020 22:29:35 +0000 (19:29 -0300)]
15718: Makes documentation clearer.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 10 Feb 2020 19:22:07 +0000 (16:22 -0300)]
16141: Fixes test to use the 1st keep_service's uuid the test server returns.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 10 Feb 2020 18:40:47 +0000 (15:40 -0300)]
16141: Adds better message on test in failing situations.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Tom Clegg [Mon, 10 Feb 2020 18:03:15 +0000 (13:03 -0500)]
Merge branch '15835-metrics-docs'
closes #15835
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Mon, 10 Feb 2020 17:54:49 +0000 (12:54 -0500)]
Pin virtualenv<20
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Lucas Di Pentima [Mon, 10 Feb 2020 17:41:44 +0000 (14:41 -0300)]
16141: Fixes GoSDK's User type.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 10 Feb 2020 17:41:10 +0000 (14:41 -0300)]
16141: Expands test for other object types.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Peter Amstutz [Mon, 10 Feb 2020 16:11:26 +0000 (11:11 -0500)]
Set upper version of setuptools for Python 2 in Centos7 container
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 10 Feb 2020 16:09:36 +0000 (11:09 -0500)]
Set upper version of setuptools for Python 2 support
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Lucas Di Pentima [Mon, 10 Feb 2020 15:41:12 +0000 (12:41 -0300)]
16141: Fixes Collection type on Go SDK. Adjusts test.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Peter Amstutz [Mon, 10 Feb 2020 15:14:05 +0000 (10:14 -0500)]
Merge branch '16139-cwl-secondaryfiles-fix'
fixes #16139
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 10 Feb 2020 15:13:07 +0000 (10:13 -0500)]
Annotate notify uses localStorage instead of sessionStorage
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Sun, 9 Feb 2020 23:07:15 +0000 (18:07 -0500)]
16139: Add test
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Lucas Di Pentima [Fri, 7 Feb 2020 23:40:51 +0000 (20:40 -0300)]
16141: Adds missing collection fields to GoSDK.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Fri, 7 Feb 2020 23:40:17 +0000 (20:40 -0300)]
16141: Exposes the bug.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Peter Amstutz [Fri, 7 Feb 2020 20:59:10 +0000 (15:59 -0500)]
16139: Fix secondaryFile errors when running --submit --no-wait
When submitting, we want to preserve the original CWL version of the
document.
However, when it creates a RunnerContainer (a cwltool.Process) it
examines the input interface and expects it to be in the 1.1 data
model. But if we preserve/reload the original document, it is still
in the 1.0 data model. This causes
The code was deliberately overriding the CWL version in metadata to
make this work. This results in the problem reported on this ticket.
The fix is to maintain both the updated and preserved documents, and
use them appropriately where they are expected.
refs #16139
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Fri, 7 Feb 2020 21:07:06 +0000 (16:07 -0500)]
15835: Update metrics docs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Fri, 7 Feb 2020 16:36:53 +0000 (11:36 -0500)]
Add note that some services require a minimal config.yml to start.
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 6 Feb 2020 22:36:12 +0000 (17:36 -0500)]
Improve readability of upgrade notes
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Thu, 6 Feb 2020 19:59:07 +0000 (14:59 -0500)]
Merge branch '16133-federation-loop'
fixes #16133
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 6 Feb 2020 19:16:55 +0000 (14:16 -0500)]
16133: Don't take multiple federation hops.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Thu, 6 Feb 2020 17:25:54 +0000 (12:25 -0500)]
Merge branch '16136-original-owner' closes #16136
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 6 Feb 2020 16:42:59 +0000 (11:42 -0500)]
16136: Prioritize 'Function' over 'Value' and ignore null
Because arvados-server config-dump will emit "Value: null" even if the
original config file didn't provide it.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Thu, 6 Feb 2020 16:14:37 +0000 (11:14 -0500)]
12308: Fix wrong error check.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
projects / arvados.git / log