arvados.git
13 months agoMerge branch '20953-installer-tls-cert-monitoring'. Closes #20953
Lucas Di Pentima [Thu, 26 Oct 2023 13:35:22 +0000 (10:35 -0300)]
Merge branch '20953-installer-tls-cert-monitoring'. Closes #20953

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months ago20953: Adjust Let's Encrypt based cert thresholds. 20953-installer-tls-cert-monitoring
Lucas Di Pentima [Thu, 26 Oct 2023 13:31:45 +0000 (10:31 -0300)]
20953: Adjust Let's Encrypt based cert thresholds.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months ago20953: Don't make prominent the SSL cert expiration normal status.
Lucas Di Pentima [Thu, 26 Oct 2023 13:30:21 +0000 (10:30 -0300)]
20953: Don't make prominent the SSL cert expiration normal status.

In order to not be distracting, the "green status" on the main Dashboard
is now colored with a transparent background.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months ago20953: Adds TLS certificate expiration red/yellow/green light on main dashboard
Lucas Di Pentima [Wed, 25 Oct 2023 20:17:25 +0000 (17:17 -0300)]
20953: Adds TLS certificate expiration red/yellow/green light on main dashboard

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months ago20953: Fixes indentation on dashboard JSON file.
Lucas Di Pentima [Wed, 25 Oct 2023 20:15:59 +0000 (17:15 -0300)]
20953: Fixes indentation on dashboard JSON file.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months ago20953: Sets sensible coloring thresholds on cert expire dates.
Lucas Di Pentima [Wed, 25 Oct 2023 20:07:31 +0000 (17:07 -0300)]
20953: Sets sensible coloring thresholds on cert expire dates.

If using Let's Encrypt certificates, the max lifetime is 3 months, so it'll
show green if the expiration is >2 months out, yellow if it's >1.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months ago20953: Properly pass auth data to HTTPS endpoints that need it.
Lucas Di Pentima [Wed, 25 Oct 2023 19:24:01 +0000 (16:24 -0300)]
20953: Properly pass auth data to HTTPS endpoints that need it.

This makes all HTTP responses green (200) on the grafana dashboard.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months ago20953: Adds blackbox-exporter HTTP probes and SSL Monitor grafana dashboard.
Lucas Di Pentima [Tue, 24 Oct 2023 23:29:11 +0000 (20:29 -0300)]
20953: Adds blackbox-exporter HTTP probes and SSL Monitor grafana dashboard.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months agoMerge branch '20984-instance-capacity'
Tom Clegg [Tue, 24 Oct 2023 19:32:49 +0000 (15:32 -0400)]
Merge branch '20984-instance-capacity'

fixes #20984

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months agoFix `go install` error on source tree permission.
Tom Clegg [Tue, 24 Oct 2023 18:50:02 +0000 (14:50 -0400)]
Fix `go install` error on source tree permission.

refs #20846

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months agoMerge branch '20300-rails7'
Tom Clegg [Mon, 23 Oct 2023 15:57:02 +0000 (11:57 -0400)]
Merge branch '20300-rails7'

refs #20300

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Merge branch 'main' into 20300-rails7 20300-rails7
Tom Clegg [Mon, 23 Oct 2023 14:38:15 +0000 (10:38 -0400)]
20300: Merge branch 'main' into 20300-rails7

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20885: Update argument docstrings after pdoc migration
Brett Smith [Fri, 20 Oct 2023 15:57:45 +0000 (11:57 -0400)]
20885: Update argument docstrings after pdoc migration

Update arvados.api_resources to use our new function argument format.

Refs #20885.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

13 months agoMerge branch '21086-cert-source'
Tom Clegg [Fri, 20 Oct 2023 15:26:35 +0000 (11:26 -0400)]
Merge branch '21086-cert-source'

fixes #21086

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months agoMerge branch '20825-cwl-separate-runner' refs #20825
Peter Amstutz [Thu, 19 Oct 2023 18:44:52 +0000 (14:44 -0400)]
Merge branch '20825-cwl-separate-runner' refs #20825

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20825: Raise WorkflowException instead of plain Exception 20825-cwl-separate-runner
Peter Amstutz [Thu, 19 Oct 2023 18:43:28 +0000 (14:43 -0400)]
20825: Raise WorkflowException instead of plain Exception

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months agoMerge branch '20969-installer-nginx-reload-fix'. Closes #20969
Lucas Di Pentima [Thu, 19 Oct 2023 18:41:30 +0000 (15:41 -0300)]
Merge branch '20969-installer-nginx-reload-fix'. Closes #20969

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months agoMerge branch '21030-update-perm-cte' refs #21030
Peter Amstutz [Thu, 19 Oct 2023 18:26:44 +0000 (14:26 -0400)]
Merge branch '21030-update-perm-cte' refs #21030

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago21086: Load custom root CAs more consistently via SSL_CERT_FILE. 21086-cert-source
Tom Clegg [Thu, 19 Oct 2023 17:01:21 +0000 (13:01 -0400)]
21086: Load custom root CAs more consistently via SSL_CERT_FILE.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months agoMerge branch '21055-sysctl-in-docker'
Tom Clegg [Tue, 17 Oct 2023 22:53:08 +0000 (18:53 -0400)]
Merge branch '21055-sysctl-in-docker'

closes #21055

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months agoMerge branch '19140-service-acct-creation-doc'. Closes #19140
Lucas Di Pentima [Tue, 17 Oct 2023 19:03:54 +0000 (16:03 -0300)]
Merge branch '19140-service-acct-creation-doc'. Closes #19140

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months ago19140: Links to scoped token doc page, mentions expires_at field. 19140-service-acct-creation-doc
Lucas Di Pentima [Tue, 17 Oct 2023 19:03:00 +0000 (16:03 -0300)]
19140: Links to scoped token doc page, mentions expires_at field.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months ago21055: Add debian 12 codename to fix docker install. 21055-sysctl-in-docker
Tom Clegg [Tue, 17 Oct 2023 18:54:57 +0000 (14:54 -0400)]
21055: Add debian 12 codename to fix docker install.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago21055: Fix unreported error due to shadowed err variable.
Tom Clegg [Tue, 17 Oct 2023 18:54:32 +0000 (14:54 -0400)]
21055: Fix unreported error due to shadowed err variable.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago21055: Fix sysctl usage to accommodate running in docker container.
Tom Clegg [Tue, 17 Oct 2023 18:20:34 +0000 (14:20 -0400)]
21055: Fix sysctl usage to accommodate running in docker container.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months agoMerge branch '21055-arvados-server-install-fix'. Closes #21055
Lucas Di Pentima [Tue, 17 Oct 2023 15:49:43 +0000 (12:49 -0300)]
Merge branch '21055-arvados-server-install-fix'. Closes #21055

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months ago20984: Wake up scheduler whenever AtCapacity condition expires. 20984-instance-capacity
Tom Clegg [Tue, 17 Oct 2023 14:02:19 +0000 (10:02 -0400)]
20984: Wake up scheduler whenever AtCapacity condition expires.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20984: Update comment.
Tom Clegg [Mon, 16 Oct 2023 19:32:24 +0000 (15:32 -0400)]
20984: Update comment.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20984: Handle "instance type not available" condition better.
Tom Clegg [Mon, 16 Oct 2023 19:04:36 +0000 (15:04 -0400)]
20984: Handle "instance type not available" condition better.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Delete superfluous config override.
Tom Clegg [Mon, 16 Oct 2023 15:55:16 +0000 (11:55 -0400)]
20300: Delete superfluous config override.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Revive logout/redirect test.
Tom Clegg [Mon, 16 Oct 2023 15:51:08 +0000 (11:51 -0400)]
20300: Revive logout/redirect test.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20969: Fixes single host case. 20969-installer-nginx-reload-fix
Lucas Di Pentima [Fri, 13 Oct 2023 20:16:42 +0000 (17:16 -0300)]
20969: Fixes single host case.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months ago20969: Reloads nginx when custom TLS cert and key files change.
Lucas Di Pentima [Thu, 12 Oct 2023 21:14:39 +0000 (18:14 -0300)]
20969: Reloads nginx when custom TLS cert and key files change.

The way it's implemented may appear overly complicated, but we do the extra
check to avoid restarting nginx with a crt file that doesn't correspond to
the key file. This will happen otherwise, as 'cmd.run' will get executed on
any of the files listed inside 'onchanges'.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months ago21030: Restore SET LOCAL enable_mergejoin to false 21030-update-perm-cte
Peter Amstutz [Fri, 13 Oct 2023 16:06:00 +0000 (12:06 -0400)]
21030: Restore SET LOCAL enable_mergejoin to false

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago21030: Add index_materialized_permissions_target_is_not_user
Peter Amstutz [Fri, 13 Oct 2023 15:24:18 +0000 (11:24 -0400)]
21030: Add index_materialized_permissions_target_is_not_user

See comment on 20231013000000_compute_permission_index.rb

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months agoMerge branch '19821-collection-docstrings'
Brett Smith [Thu, 12 Oct 2023 18:52:55 +0000 (14:52 -0400)]
Merge branch '19821-collection-docstrings'

Closes #19821.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

13 months ago19821: Fix module typo
Brett Smith [Thu, 12 Oct 2023 18:52:31 +0000 (14:52 -0400)]
19821: Fix module typo

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

13 months ago19821: Convert CollectionWriter.open docstring to Markdown 19821-collection-docstrings
Brett Smith [Thu, 12 Oct 2023 18:06:19 +0000 (14:06 -0400)]
19821: Convert CollectionWriter.open docstring to Markdown

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

13 months ago19821: Fully qualify docstring types
Brett Smith [Thu, 12 Oct 2023 18:00:49 +0000 (14:00 -0400)]
19821: Fully qualify docstring types

This gets pdoc to hyperlink the type.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

13 months agoMerge branch '20933-arv-copy-cwl' refs #20933
Peter Amstutz [Thu, 12 Oct 2023 14:00:13 +0000 (10:00 -0400)]
Merge branch '20933-arv-copy-cwl'  refs #20933

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20933: Only pin zipp on Python 3.7
Peter Amstutz [Thu, 12 Oct 2023 13:59:31 +0000 (09:59 -0400)]
20933: Only pin zipp on Python 3.7

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20933: Code cleanups 20933-arv-copy-cwl
Peter Amstutz [Wed, 11 Oct 2023 20:57:59 +0000 (16:57 -0400)]
20933: Code cleanups

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20933: Use [0-9] instead of \d in regex
Peter Amstutz [Wed, 11 Oct 2023 20:32:50 +0000 (16:32 -0400)]
20933: Use [0-9] instead of \d in regex

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20933: Update arv-copy doc to mention it requires arvados-cwl-runner.
Peter Amstutz [Thu, 5 Oct 2023 20:21:39 +0000 (16:21 -0400)]
20933: Update arv-copy doc to mention it requires arvados-cwl-runner.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20933: Handle errors when calling arvados-cwl-runner
Peter Amstutz [Thu, 5 Oct 2023 19:52:10 +0000 (15:52 -0400)]
20933: Handle errors when calling arvados-cwl-runner

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20933: Add --print-keep-deps test
Peter Amstutz [Thu, 5 Oct 2023 13:39:51 +0000 (09:39 -0400)]
20933: Add --print-keep-deps test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20933: Fix tests
Peter Amstutz [Wed, 4 Oct 2023 21:50:05 +0000 (17:50 -0400)]
20933: Fix tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20933: Copies collections reported by a-c-r
Peter Amstutz [Thu, 7 Sep 2023 20:43:45 +0000 (16:43 -0400)]
20933: Copies collections reported by a-c-r

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20933: Use acrContainerImage where available
Peter Amstutz [Thu, 7 Sep 2023 20:30:14 +0000 (16:30 -0400)]
20933: Use acrContainerImage where available

also refs #20592

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20933: Adding --print-keep-deps to assist arv-copy
Peter Amstutz [Thu, 7 Sep 2023 18:37:05 +0000 (14:37 -0400)]
20933: Adding --print-keep-deps to assist arv-copy

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago19821: Bugfix type declarations for compatibility with Python<3.9
Brett Smith [Wed, 11 Oct 2023 16:40:55 +0000 (12:40 -0400)]
19821: Bugfix type declarations for compatibility with Python<3.9

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

13 months ago19821: Improve consistency of Properties type
Brett Smith [Wed, 11 Oct 2023 16:40:18 +0000 (12:40 -0400)]
19821: Improve consistency of Properties type

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

13 months ago19821: Document the arvados.collection module
Brett Smith [Tue, 10 Oct 2023 20:24:12 +0000 (16:24 -0400)]
19821: Document the arvados.collection module

* Add docstrings and type signatures to all public methods.

* Mark all deprecated classes and methods. Move them to the bottom of
  the module for better organization of web documentation.

* Mark all internal classes and methods.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

13 months agoClose span
Peter Amstutz [Wed, 11 Oct 2023 14:25:41 +0000 (10:25 -0400)]
Close span

refs #20937

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months agoRemove duplicated ~$
Peter Amstutz [Wed, 11 Oct 2023 14:16:44 +0000 (10:16 -0400)]
Remove duplicated ~$

refs #20937

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months agoMerge branch '20937-arv-copy-http' refs #20937
Peter Amstutz [Wed, 11 Oct 2023 13:20:29 +0000 (09:20 -0400)]
Merge branch '20937-arv-copy-http' refs #20937

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20937: Simplify use of logger.error
Peter Amstutz [Wed, 11 Oct 2023 13:19:24 +0000 (09:19 -0400)]
20937: Simplify use of logger.error

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20937: Improve error handling 20937-arv-copy-http
Peter Amstutz [Tue, 10 Oct 2023 17:49:15 +0000 (13:49 -0400)]
20937: Improve error handling

Also clean up docs a bit

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months agoMerge branch '20949-wb-redirects-improvements'. Closes #20949
Lucas Di Pentima [Tue, 10 Oct 2023 15:29:34 +0000 (12:29 -0300)]
Merge branch '20949-wb-redirects-improvements'. Closes #20949

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months ago21055: Replaces %w with %v for error logging. 21055-arvados-server-install-fix
Lucas Di Pentima [Tue, 10 Oct 2023 15:17:02 +0000 (12:17 -0300)]
21055: Replaces %w with %v for error logging.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months ago21055: Don't exit when failing to set inotify.max_user_watches.
Lucas Di Pentima [Tue, 10 Oct 2023 14:45:29 +0000 (11:45 -0300)]
21055: Don't exit when failing to set inotify.max_user_watches.

Docker containers mount procfs as read-only and inherit this setting from
their host: https://github.com/coder/code-server/issues/628

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months ago19140: Adds admin documentation about service account management.
Lucas Di Pentima [Mon, 9 Oct 2023 14:42:44 +0000 (11:42 -0300)]
19140: Adds admin documentation about service account management.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months ago19140: Adds TOC to User Management Admin doc page.
Lucas Di Pentima [Fri, 6 Oct 2023 20:57:22 +0000 (17:57 -0300)]
19140: Adds TOC to User Management Admin doc page.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months ago20949: Adds query string based redirections from wb1's actions controller. 20949-wb-redirects-improvements
Lucas Di Pentima [Fri, 6 Oct 2023 17:23:20 +0000 (14:23 -0300)]
20949: Adds query string based redirections from wb1's actions controller.

Matches '/actions?uuid=X' URLs and redirects to an appropriate WB2 URL.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months ago20825: Fix zipp dependency, add missing file
Peter Amstutz [Fri, 6 Oct 2023 15:25:35 +0000 (11:25 -0400)]
20825: Fix zipp dependency, add missing file

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20937: Update documentation
Peter Amstutz [Fri, 6 Oct 2023 14:42:11 +0000 (10:42 -0400)]
20937: Update documentation

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20300: Fix unused var.
Tom Clegg [Fri, 6 Oct 2023 14:13:39 +0000 (10:13 -0400)]
20300: Fix unused var.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20937: Return same tuple consistently from http_to_keep
Peter Amstutz [Fri, 6 Oct 2023 14:01:40 +0000 (10:01 -0400)]
20937: Return same tuple consistently from http_to_keep

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20825: Allow arvwf: in 'run'
Peter Amstutz [Tue, 12 Sep 2023 13:32:30 +0000 (09:32 -0400)]
20825: Allow arvwf: in 'run'

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20825: Make SeparateRunner reusable
Peter Amstutz [Tue, 12 Sep 2023 01:49:55 +0000 (21:49 -0400)]
20825: Make SeparateRunner reusable

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20825: Remove print statement
Peter Amstutz [Tue, 12 Sep 2023 01:44:48 +0000 (21:44 -0400)]
20825: Remove print statement

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20825: Add runnerProcessName
Peter Amstutz [Tue, 12 Sep 2023 01:38:13 +0000 (21:38 -0400)]
20825: Add runnerProcessName

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20825: Fix edge case producing incorrect error
Peter Amstutz [Tue, 12 Sep 2023 01:25:31 +0000 (21:25 -0400)]
20825: Fix edge case producing incorrect error

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20825: Fix git_info
Peter Amstutz [Tue, 12 Sep 2023 01:09:14 +0000 (21:09 -0400)]
20825: Fix git_info

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20825: Fixing invocation
Peter Amstutz [Tue, 12 Sep 2023 00:58:18 +0000 (20:58 -0400)]
20825: Fixing invocation

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20825: arv:SeparateRunner first try
Peter Amstutz [Tue, 12 Sep 2023 00:42:55 +0000 (20:42 -0400)]
20825: arv:SeparateRunner first try

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20937: fix deadlock with duplicated blocks
Peter Amstutz [Mon, 11 Sep 2023 20:45:44 +0000 (16:45 -0400)]
20937: fix deadlock with duplicated blocks

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20937: Set limit on 'put' queue
Peter Amstutz [Mon, 11 Sep 2023 20:10:08 +0000 (16:10 -0400)]
20937: Set limit on 'put' queue

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20937: Fix in -> is typo
Peter Amstutz [Mon, 11 Sep 2023 19:57:53 +0000 (15:57 -0400)]
20937: Fix in -> is typo

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20937: Handle None result
Peter Amstutz [Mon, 11 Sep 2023 19:56:18 +0000 (15:56 -0400)]
20937: Handle None result

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20937: Fix pathmapper use of http_to_keep
Peter Amstutz [Mon, 11 Sep 2023 17:02:42 +0000 (13:02 -0400)]
20937: Fix pathmapper use of http_to_keep

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20937: Add error handling to threaded collection copy
Peter Amstutz [Mon, 11 Sep 2023 14:02:26 +0000 (10:02 -0400)]
20937: Add error handling to threaded collection copy

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20937: Better handling of repeated blocks
Peter Amstutz [Fri, 8 Sep 2023 02:46:44 +0000 (22:46 -0400)]
20937: Better handling of repeated blocks

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20937: Fix progress writer
Peter Amstutz [Fri, 8 Sep 2023 02:33:51 +0000 (22:33 -0400)]
20937: Fix progress writer

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20937: Parallel collection copy
Peter Amstutz [Thu, 5 Oct 2023 19:14:31 +0000 (15:14 -0400)]
20937: Parallel collection copy

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago20937: Add http import capability to arv-copy
Peter Amstutz [Fri, 8 Sep 2023 01:52:14 +0000 (21:52 -0400)]
20937: Add http import capability to arv-copy

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months agoMerge branch 'main' from workbench2.git
Tom Clegg [Thu, 5 Oct 2023 15:46:31 +0000 (11:46 -0400)]
Merge branch 'main' from workbench2.git

refs #18874

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months agoMerge branch '21002-restore-banner-adjust-width'
Lisa Knox [Thu, 5 Oct 2023 14:45:32 +0000 (10:45 -0400)]
Merge branch '21002-restore-banner-adjust-width'

closes #21002

Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

13 months ago20300: Fix crash on empty Content-Type header.
Tom Clegg [Thu, 5 Oct 2023 13:48:29 +0000 (09:48 -0400)]
20300: Fix crash on empty Content-Type header.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Update test.
Tom Clegg [Wed, 4 Oct 2023 15:45:09 +0000 (11:45 -0400)]
20300: Update test.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months ago20300: Fix controller-to-railsapi callback usage.
Tom Clegg [Wed, 4 Oct 2023 15:07:20 +0000 (11:07 -0400)]
20300: Fix controller-to-railsapi callback usage.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months agoMerge branch '21033-wb2-dependency-upgrades'. Closes #21033
Lucas Di Pentima [Tue, 3 Oct 2023 20:52:35 +0000 (17:52 -0300)]
Merge branch '21033-wb2-dependency-upgrades'. Closes #21033

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months ago21033: Applies dependency upgrades.
Lucas Di Pentima [Tue, 3 Oct 2023 18:59:23 +0000 (15:59 -0300)]
21033: Applies dependency upgrades.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

13 months agoMerge branch '20990-name-btree' refs #20990
Peter Amstutz [Tue, 3 Oct 2023 13:54:30 +0000 (09:54 -0400)]
Merge branch '20990-name-btree' refs #20990

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago21030: Use a CTE instead of temporary table for trash and frozen
Peter Amstutz [Mon, 2 Oct 2023 21:09:05 +0000 (17:09 -0400)]
21030: Use a CTE instead of temporary table for trash and frozen

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago21030: Use a CTE instead of temporary table for update_permissions
Peter Amstutz [Mon, 2 Oct 2023 20:37:53 +0000 (16:37 -0400)]
21030: Use a CTE instead of temporary table for update_permissions

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

13 months ago21028: Build Ruby from source on rocky8
Brett Smith [Fri, 29 Sep 2023 22:48:41 +0000 (18:48 -0400)]
21028: Build Ruby from source on rocky8

Same rationale as fe8da34676be7c6fbb1042fcfcabee19bfa424d0.

Refs #21028.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

13 months ago20300: Add back /logout stub.
Tom Clegg [Fri, 29 Sep 2023 21:06:26 +0000 (17:06 -0400)]
20300: Add back /logout stub.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 months agoNote that groups/contents API can accept a user UUID
Brett Smith [Fri, 29 Sep 2023 19:35:21 +0000 (15:35 -0400)]
Note that groups/contents API can accept a user UUID

This is very helpful for generalizing project walk code and I don't
think it's documented anywhere.

No issue #.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

13 months ago21028: Build Ruby from source on rocky8
Brett Smith [Fri, 29 Sep 2023 19:23:56 +0000 (15:23 -0400)]
21028: Build Ruby from source on rocky8

Without this, RVM downloads a binary Ruby with a bunch of configuration
options turned on. This can lead to problems building extensions when
Ruby thinks a certain feature is supported but our Docker image doesn't
have the headers to support it. Right now we're seeing that in the zlib
gem: it has extra code to turn on when Ruby supports Valgrind, but we
don't have the Valgrind headers necessary to build that code.

Closes #21028.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>